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The map label for this gene is rfbA [H]

Identifier: 37522904

GI number: 37522904

Start: 3541200

End: 3542006

Strand: Reverse

Name: rfbA [H]

Synonym: gll3335

Alternate gene names: 37522904

Gene position: 3542006-3541200 (Counterclockwise)

Preceding gene: 37522906

Following gene: 37522903

Centisome position: 76.02

GC content: 57.87

Gene sequence:

>807_bases
ATGCTGCGCGCGATTCAGCCCGAAAAAGTCTATCCCTCGATTCAGCGCTACCTGGAGTTGCTGTTCATGCTCACCTGGCG
CAACCTCAAGGTGCGCTACCGTGGCTCCGCACTGGGCATTTACTGGTCGCTGCTCAATCCGCTGATCATGACCGGGGTCT
ACACGGCCATATTCGGCACCACGTTCGCTTCTTACTACAACGATTCGCTGCTGAGCTATCTGCTCGCCGCCTTCACGGGC
CTGGTGGTAATCAACTTCTTCAACATCACCACCCTCCAGGCCCTGCCGAGCGTGGTCGCAAGCGGCGCGATGCTCAACAA
AATCCGTATTCCCTTCAGCGTTCTCCCCCTTTCGCTGGTGGGTGCCAATATTTTTCAGTACGTGGTGGGTGTGCTGCCGC
TTTTGGTGGTGATGACCTTGTTCATCACCGGGCAGCCCGCCCACGTGCCGTTGCTGCTTTTGCCTTCGCTGGCCCTGGCG
CTGGTGGCGACCGGCATCAGCCTGATGGTGAGCGCCCTCTATGTCTTTTTTCGCGATTTGCCCTATATCTATGAATTGGT
CACTTTTGCGCTGTTTTTGAGCAGCCCGGTGTTCTATCCGGCGGCCATCGTTCCGGATTCTGTCAAGCCTTTTCTTGCAA
TCAACCCGCTCACGCCGATCATCGAAAGCCTGCGCCAATTGATCTTAGGCGGCACCGCCATCGACTGGGGTCTACTGGGT
TTCGCCCTGCTGTCGGGTGGGGTGGTCTGCGGCCTCGGTTGGGCGCTGTTCCACGCCTGGTCCGATCGCTACATGGACTT
GTTGTAG

Upstream 100 bases:

>100_bases
ATTTTAGGGCGGCGGTGCGGCCGGTTTGGCATCCGGCGGACCGTTGCATCCACCCGCCGGTGGTGCATAGTAAAGGATGT
GCCCAATCCCCCAATGTGCC

Downstream 100 bases:

>100_bases
CCTGGTCAACTGCGCTAGTCTGCCTAAAGGTTCATCCGCAACATCCCATTGGAAGCCATTCGACTCAGCAACGTTTCTCT
CTGGCGGCGCACCCAGGAAG

Product: ABC transporter permease protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 268; Mature: 268

Protein sequence:

>268_residues
MLRAIQPEKVYPSIQRYLELLFMLTWRNLKVRYRGSALGIYWSLLNPLIMTGVYTAIFGTTFASYYNDSLLSYLLAAFTG
LVVINFFNITTLQALPSVVASGAMLNKIRIPFSVLPLSLVGANIFQYVVGVLPLLVVMTLFITGQPAHVPLLLLPSLALA
LVATGISLMVSALYVFFRDLPYIYELVTFALFLSSPVFYPAAIVPDSVKPFLAINPLTPIIESLRQLILGGTAIDWGLLG
FALLSGGVVCGLGWALFHAWSDRYMDLL

Sequences:

>Translated_268_residues
MLRAIQPEKVYPSIQRYLELLFMLTWRNLKVRYRGSALGIYWSLLNPLIMTGVYTAIFGTTFASYYNDSLLSYLLAAFTG
LVVINFFNITTLQALPSVVASGAMLNKIRIPFSVLPLSLVGANIFQYVVGVLPLLVVMTLFITGQPAHVPLLLLPSLALA
LVATGISLMVSALYVFFRDLPYIYELVTFALFLSSPVFYPAAIVPDSVKPFLAINPLTPIIESLRQLILGGTAIDWGLLG
FALLSGGVVCGLGWALFHAWSDRYMDLL
>Mature_268_residues
MLRAIQPEKVYPSIQRYLELLFMLTWRNLKVRYRGSALGIYWSLLNPLIMTGVYTAIFGTTFASYYNDSLLSYLLAAFTG
LVVINFFNITTLQALPSVVASGAMLNKIRIPFSVLPLSLVGANIFQYVVGVLPLLVVMTLFITGQPAHVPLLLLPSLALA
LVATGISLMVSALYVFFRDLPYIYELVTFALFLSSPVFYPAAIVPDSVKPFLAINPLTPIIESLRQLILGGTAIDWGLLG
FALLSGGVVCGLGWALFHAWSDRYMDLL

Specific function: May form an ATP-driven O-antigen export apparatus, in association with rfbB [H]

COG id: COG1682

COG function: function code GM; ABC-type polysaccharide/polyol phosphate export systems, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000412
- InterPro:   IPR013525 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 29522; Mature: 29522

Theoretical pI: Translated: 9.13; Mature: 9.13

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRAIQPEKVYPSIQRYLELLFMLTWRNLKVRYRGSALGIYWSLLNPLIMTGVYTAIFGT
CCCCCCCHHCCHHHHHHHHHHHHHHHHCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHH
TFASYYNDSLLSYLLAAFTGLVVINFFNITTLQALPSVVASGAMLNKIRIPFSVLPLSLV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCHHHHHHHHH
GANIFQYVVGVLPLLVVMTLFITGQPAHVPLLLLPSLALALVATGISLMVSALYVFFRDL
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PYIYELVTFALFLSSPVFYPAAIVPDSVKPFLAINPLTPIIESLRQLILGGTAIDWGLLG
HHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCEEECCHHHHHHHHHHHHHCCCHHHHHHHH
FALLSGGVVCGLGWALFHAWSDRYMDLL
HHHHHCCHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLRAIQPEKVYPSIQRYLELLFMLTWRNLKVRYRGSALGIYWSLLNPLIMTGVYTAIFGT
CCCCCCCHHCCHHHHHHHHHHHHHHHHCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHH
TFASYYNDSLLSYLLAAFTGLVVINFFNITTLQALPSVVASGAMLNKIRIPFSVLPLSLV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCHHHHHHHHH
GANIFQYVVGVLPLLVVMTLFITGQPAHVPLLLLPSLALALVATGISLMVSALYVFFRDL
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PYIYELVTFALFLSSPVFYPAAIVPDSVKPFLAINPLTPIIESLRQLILGGTAIDWGLLG
HHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCEEECCHHHHHHHHHHHHHCCCHHHHHHHH
FALLSGGVVCGLGWALFHAWSDRYMDLL
HHHHHCCHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7533882 [H]