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The map label for this gene is ccsA

Identifier: 37521591

GI number: 37521591

Start: 2173228

End: 2174244

Strand: Direct

Name: ccsA

Synonym: gvip273

Alternate gene names: 37521591

Gene position: 2173228-2174244 (Clockwise)

Preceding gene: 37521590

Following gene: 37521592

Centisome position: 46.65

GC content: 63.62

Gene sequence:

>1017_bases
ATGAACGCGAGCCAGCTCGTCGCCATTCAGGTGCTTCTCGACAACGCCGCCTTTGCCGCTTTGATGGTGGCCACCGCTCT
CTACTGGCTGGCCGCCGCCTTTCGCCGGGTGCCGCTGTTGCACGAACTGGGCACCGGCGCCTCGGCGGTGGCGCTTTTGA
GCGTCACGGGCCTGCTCACCGCCCGCTGGATCGAGACGGACCACTTTCCGGTGAGCAACCTTTACGAATCGCTGTTTTTC
TTGTGCTGGTGCGTGCTCGCCGTCCACATCGCCGCCGAAGCCTTCGCCCGCCAGCGGCTGGTGGGCGTGTTCACCCTGCC
GGTGGCGCTCGGCATGGTTGCGTTTTCTTCATTGACGCTCTCACCCGCGATGAAGGCCGGCGGACCGCTGGTGCCCGCCC
TCAAATCCAACTGGCTGATGATGCACGTGAGCGTGATGATCCTGAGCTACGGCGCGCTGATGGTCGGTTCGCTGGTGTCC
ATTGCCTTTTTGATCGTCACCTGGAAGCAAAAAGACCCCGAATTGCGGGGCAGCTCCGTGGGCACCGGCGGGTTTCAGAA
AGCCGAATACACCGACTCCGAGAGCACACCGCCCGCGGGTTCGATGCTTTCGAGCCTGGGTGTGGGTGGAAGTGAGACCA
CTGTCACTCTCACTTCCGCCACCGCCACCGCCGGTACTGCCCTGCGCCGCTCGAATCTGGCCGAGACCCTCGACAATCTG
AGTTACCGCCTGATCGGCCTGGGCTTTCCGCTGATCACCGTGGGCATCATCGCCGGGGCCGTCTGGGCCAACGAAGCCTG
GGGTTCCTACTGGAGCTGGGATCCCAAGGAAACCTGGTCGCTGATTACCTGGTTCATCTTTGCGGCCTACCTGCACGCGC
GCATCACCCGGGGCTGGCAGGGCCGTCGCCCGGCTACGCTCGCGGCGGTGGGTTTCGTTTCGGTATGGATCACTTATCTT
GGGGTCAACTTCCTGGCCCAGGGCCTGCACAGCTACGGCTGGCTGTCTGGAAACTGA

Upstream 100 bases:

>100_bases
ATCGGTTTTGAGCGTGAACTGGTCCGCATGGTGGCCGCCGTCCAGACCCCCCGTCCCCGCACTTCCGACGCCCTATCCGC
CGCACAGGAGTAACGGTCCC

Downstream 100 bases:

>100_bases
AGCGCGTCACGAGTGCGGGGAGCCTGACGTGGTGGAGCATCCAAATTCGACCGAGCCATCCCGGCCATCCGTTGCCCACG
GTTTCTGGCGCTGGTTCTCC

Product: c-type cytochrome biogenesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 338; Mature: 338

Protein sequence:

>338_residues
MNASQLVAIQVLLDNAAFAALMVATALYWLAAAFRRVPLLHELGTGASAVALLSVTGLLTARWIETDHFPVSNLYESLFF
LCWCVLAVHIAAEAFARQRLVGVFTLPVALGMVAFSSLTLSPAMKAGGPLVPALKSNWLMMHVSVMILSYGALMVGSLVS
IAFLIVTWKQKDPELRGSSVGTGGFQKAEYTDSESTPPAGSMLSSLGVGGSETTVTLTSATATAGTALRRSNLAETLDNL
SYRLIGLGFPLITVGIIAGAVWANEAWGSYWSWDPKETWSLITWFIFAAYLHARITRGWQGRRPATLAAVGFVSVWITYL
GVNFLAQGLHSYGWLSGN

Sequences:

>Translated_338_residues
MNASQLVAIQVLLDNAAFAALMVATALYWLAAAFRRVPLLHELGTGASAVALLSVTGLLTARWIETDHFPVSNLYESLFF
LCWCVLAVHIAAEAFARQRLVGVFTLPVALGMVAFSSLTLSPAMKAGGPLVPALKSNWLMMHVSVMILSYGALMVGSLVS
IAFLIVTWKQKDPELRGSSVGTGGFQKAEYTDSESTPPAGSMLSSLGVGGSETTVTLTSATATAGTALRRSNLAETLDNL
SYRLIGLGFPLITVGIIAGAVWANEAWGSYWSWDPKETWSLITWFIFAAYLHARITRGWQGRRPATLAAVGFVSVWITYL
GVNFLAQGLHSYGWLSGN
>Mature_338_residues
MNASQLVAIQVLLDNAAFAALMVATALYWLAAAFRRVPLLHELGTGASAVALLSVTGLLTARWIETDHFPVSNLYESLFF
LCWCVLAVHIAAEAFARQRLVGVFTLPVALGMVAFSSLTLSPAMKAGGPLVPALKSNWLMMHVSVMILSYGALMVGSLVS
IAFLIVTWKQKDPELRGSSVGTGGFQKAEYTDSESTPPAGSMLSSLGVGGSETTVTLTSATATAGTALRRSNLAETLDNL
SYRLIGLGFPLITVGIIAGAVWANEAWGSYWSWDPKETWSLITWFIFAAYLHARITRGWQGRRPATLAAVGFVSVWITYL
GVNFLAQGLHSYGWLSGN

Specific function: Required during biogenesis of c-type cytochromes (cytochrome c6 and cytochrome f) at the step of heme attachment

COG id: COG0755

COG function: function code O; ABC-type transport system involved in cytochrome c biogenesis, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ccmF/cycK/ccl1/nrfE/ccsA family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CCSA_GLOVI (Q7NJ10)

Other databases:

- EMBL:   BA000045
- RefSeq:   NP_924968.1
- GeneID:   2600424
- GenomeReviews:   BA000045_GR
- NMPDR:   fig|251221.1.peg.2022
- HOGENOM:   HBG733666
- OMA:   WALICWL
- ProtClustDB:   CLSK892624
- BioCyc:   GVIO251221:GLR2022-MONOMER
- HAMAP:   MF_01391
- InterPro:   IPR002541
- InterPro:   IPR017562
- TIGRFAMs:   TIGR03144

Pfam domain/function: PF01578 Cytochrom_C_asm

EC number: NA

Molecular weight: Translated: 36239; Mature: 36239

Theoretical pI: Translated: 8.65; Mature: 8.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x14708178)-; HASH(0x13ca0e88)-; HASH(0x1322e9a8)-; HASH(0x148d85d8)-; HASH(0x138d8e08)-; HASH(0x14e4987c)-; HASH(0x129a1774)-; HASH(0x14e4cd54)-;

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNASQLVAIQVLLDNAAFAALMVATALYWLAAAFRRVPLLHELGTGASAVALLSVTGLLT
CCCHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHH
ARWIETDHFPVSNLYESLFFLCWCVLAVHIAAEAFARQRLVGVFTLPVALGMVAFSSLTL
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
SPAMKAGGPLVPALKSNWLMMHVSVMILSYGALMVGSLVSIAFLIVTWKQKDPELRGSSV
CHHHHCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
GTGGFQKAEYTDSESTPPAGSMLSSLGVGGSETTVTLTSATATAGTALRRSNLAETLDNL
CCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHC
SYRLIGLGFPLITVGIIAGAVWANEAWGSYWSWDPKETWSLITWFIFAAYLHARITRGWQ
HHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
GRRPATLAAVGFVSVWITYLGVNFLAQGLHSYGWLSGN
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
>Mature Secondary Structure
MNASQLVAIQVLLDNAAFAALMVATALYWLAAAFRRVPLLHELGTGASAVALLSVTGLLT
CCCHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHH
ARWIETDHFPVSNLYESLFFLCWCVLAVHIAAEAFARQRLVGVFTLPVALGMVAFSSLTL
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
SPAMKAGGPLVPALKSNWLMMHVSVMILSYGALMVGSLVSIAFLIVTWKQKDPELRGSSV
CHHHHCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
GTGGFQKAEYTDSESTPPAGSMLSSLGVGGSETTVTLTSATATAGTALRRSNLAETLDNL
CCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHC
SYRLIGLGFPLITVGIIAGAVWANEAWGSYWSWDPKETWSLITWFIFAAYLHARITRGWQ
HHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
GRRPATLAAVGFVSVWITYLGVNFLAQGLHSYGWLSGN
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 14621292