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The map label for this gene is ccs1

Identifier: 37521590

GI number: 37521590

Start: 2171796

End: 2173220

Strand: Direct

Name: ccs1

Synonym: gvip272

Alternate gene names: 37521590

Gene position: 2171796-2173220 (Clockwise)

Preceding gene: 37521586

Following gene: 37521591

Centisome position: 46.61

GC content: 63.3

Gene sequence:

>1425_bases
ATGGGGAGCGACGGATTACAATGGGTTTCGAGATCCCTGGAGCATCGCCCTATGACATCCCTCTGGCGGGATATCCGGCA
TGAGGTGGCCGCCTGGCTCGGTTCGTTGAAACTGGCCATCGGGCTTTTTCTGGCCATCGCCGCCGCGAGCATCGCCGGCA
CGGTCATCCCCCAGGGCGAATCGACCGATTTTTATCGACAGAACTATCCCGACTCCGGTGCGGTGGTCTGGGGGTTTGTC
ACCTGGCGCTTTATCATCAGTCTCGGGCTCGACGAAGTCTACCGCAGCTGGTGGTTCGTGGCCCTGTTGCTGCTATTGGC
CACGAGCCTGACTATCTGTACCTTCCGCCGCCAGATCCCGATGCTCAAGGCGGCGCAAAACTGGAAGTTTTATACCGAAC
CGCGCCAGCTCAGCAAATATGCCCTGCGCACGGCCATTCCCGCCCGGGGCACGGGGCCGCTGGCCGAGCAACTACGCGCC
GGCCGCTACAAGGTCTATCAGCGCGACGACTTGATTTACGCCACCAAGGGCACCATCGGTCGGGTGGGACCTATCGTCGT
GCACGTGAGCCTGCTGCTCATCATGGCGGGGGCGATGATCGGCGCCTTCGGCGGTTACCAGACCCAGCGGATGACCCTCG
CGGGCGACAGTTTCGACATCCAACAAGTCGAGCAGTCGCGCCTGTCGCTGGCGCGCCCGCCCGACTGGACAGTGCGCGTC
AACAAGTTCTGGATCGACTACCGCCCGGACGGCTCGGTGGACCAGTTTCACTCGGATCTCTCGGTGGTGAGCCCCGCAGG
CAAGGAACTGGAGCGCAAAACCATCTCCGTCAACGACCCGCTGATTTACGACGGGGTGACGATGTACCAGGCAAGTTGGG
CGGTCGGTGCTTTTAAGCTGCGCCTCAACGACAGCCCTGTGCTCACCATCCCGATGCAGCCTATCGAAGCCCCAAATGGC
CAGGAAGCCTGGGGTCAGGCAATCCCCTTCGACAAAGACGGCCGGGTGGCTCTGCAGATGGTCACCCGCGGTCTGCAGGG
CAGCCTAATGCTGTTGCCCTTCAACCCGCGCACCGGTGAAACCGTCCGCGAGGCGGCCACCCCCGCCCGGGTCGGCAAAC
CGGTGAGCGTACTCGGCCAGCGGCTGGTGATTGAAGAACTGGTGGGCCAGACCGGCATCCAGATCAAGGCCGATCCCGGC
ATCCCGGTGGTCTACGCCGGGTTCGCTTTGTTGATGGTAGGGTTGGCCATGAGCTATCTCAGCCACTCCCAGGTATGGGC
CATCTACCGCGACGGCCAATTGCACGTCGCCGGGCGCACCAACCGGGCGCAGATCGGTTTTGAGCGTGAACTGGTCCGCA
TGGTGGCCGCCGTCCAGACCCCCCGTCCCCGCACTTCCGACGCCCTATCCGCCGCACAGGAGTAA

Upstream 100 bases:

>100_bases
AATGTTCAAAGCAGTCTGTTGAGCCATGGGTCGAAACCTCGCCGTACCTCAATCTTAGCGCCGCGCAGTGTTTGTCCCGT
TGATCCCCCGGCTGGGAGGC

Downstream 100 bases:

>100_bases
CGGTCCCATGAACGCGAGCCAGCTCGTCGCCATTCAGGTGCTTCTCGACAACGCCGCCTTTGCCGCTTTGATGGTGGCCA
CCGCTCTCTACTGGCTGGCC

Product: c-type cytochrome biogenesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 474; Mature: 473

Protein sequence:

>474_residues
MGSDGLQWVSRSLEHRPMTSLWRDIRHEVAAWLGSLKLAIGLFLAIAAASIAGTVIPQGESTDFYRQNYPDSGAVVWGFV
TWRFIISLGLDEVYRSWWFVALLLLLATSLTICTFRRQIPMLKAAQNWKFYTEPRQLSKYALRTAIPARGTGPLAEQLRA
GRYKVYQRDDLIYATKGTIGRVGPIVVHVSLLLIMAGAMIGAFGGYQTQRMTLAGDSFDIQQVEQSRLSLARPPDWTVRV
NKFWIDYRPDGSVDQFHSDLSVVSPAGKELERKTISVNDPLIYDGVTMYQASWAVGAFKLRLNDSPVLTIPMQPIEAPNG
QEAWGQAIPFDKDGRVALQMVTRGLQGSLMLLPFNPRTGETVREAATPARVGKPVSVLGQRLVIEELVGQTGIQIKADPG
IPVVYAGFALLMVGLAMSYLSHSQVWAIYRDGQLHVAGRTNRAQIGFERELVRMVAAVQTPRPRTSDALSAAQE

Sequences:

>Translated_474_residues
MGSDGLQWVSRSLEHRPMTSLWRDIRHEVAAWLGSLKLAIGLFLAIAAASIAGTVIPQGESTDFYRQNYPDSGAVVWGFV
TWRFIISLGLDEVYRSWWFVALLLLLATSLTICTFRRQIPMLKAAQNWKFYTEPRQLSKYALRTAIPARGTGPLAEQLRA
GRYKVYQRDDLIYATKGTIGRVGPIVVHVSLLLIMAGAMIGAFGGYQTQRMTLAGDSFDIQQVEQSRLSLARPPDWTVRV
NKFWIDYRPDGSVDQFHSDLSVVSPAGKELERKTISVNDPLIYDGVTMYQASWAVGAFKLRLNDSPVLTIPMQPIEAPNG
QEAWGQAIPFDKDGRVALQMVTRGLQGSLMLLPFNPRTGETVREAATPARVGKPVSVLGQRLVIEELVGQTGIQIKADPG
IPVVYAGFALLMVGLAMSYLSHSQVWAIYRDGQLHVAGRTNRAQIGFERELVRMVAAVQTPRPRTSDALSAAQE
>Mature_473_residues
GSDGLQWVSRSLEHRPMTSLWRDIRHEVAAWLGSLKLAIGLFLAIAAASIAGTVIPQGESTDFYRQNYPDSGAVVWGFVT
WRFIISLGLDEVYRSWWFVALLLLLATSLTICTFRRQIPMLKAAQNWKFYTEPRQLSKYALRTAIPARGTGPLAEQLRAG
RYKVYQRDDLIYATKGTIGRVGPIVVHVSLLLIMAGAMIGAFGGYQTQRMTLAGDSFDIQQVEQSRLSLARPPDWTVRVN
KFWIDYRPDGSVDQFHSDLSVVSPAGKELERKTISVNDPLIYDGVTMYQASWAVGAFKLRLNDSPVLTIPMQPIEAPNGQ
EAWGQAIPFDKDGRVALQMVTRGLQGSLMLLPFNPRTGETVREAATPARVGKPVSVLGQRLVIEELVGQTGIQIKADPGI
PVVYAGFALLMVGLAMSYLSHSQVWAIYRDGQLHVAGRTNRAQIGFERELVRMVAAVQTPRPRTSDALSAAQE

Specific function: Required during biogenesis of c-type cytochromes (cytochrome c6 and cytochrome f) at the step of heme attachment

COG id: COG1333

COG function: function code O; ResB protein required for cytochrome c biosynthesis

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ccs1/ccsB family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CCS1_GLOVI (Q7NJ11)

Other databases:

- EMBL:   BA000045
- RefSeq:   NP_924967.1
- GeneID:   2600423
- GenomeReviews:   BA000045_GR
- NMPDR:   fig|251221.1.peg.2021
- HOGENOM:   HBG635079
- OMA:   VKCECGH
- ProtClustDB:   CLSK893068
- BioCyc:   GVIO251221:GLR2021-MONOMER
- HAMAP:   MF_01392
- InterPro:   IPR007816

Pfam domain/function: PF05140 ResB

EC number: NA

Molecular weight: Translated: 52487; Mature: 52356

Theoretical pI: Translated: 9.88; Mature: 9.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x14902190)-; HASH(0x146ea8dc)-; HASH(0x13364248)-;

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGSDGLQWVSRSLEHRPMTSLWRDIRHEVAAWLGSLKLAIGLFLAIAAASIAGTVIPQGE
CCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
STDFYRQNYPDSGAVVWGFVTWRFIISLGLDEVYRSWWFVALLLLLATSLTICTFRRQIP
CCCHHHHCCCCCCCEEHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
MLKAAQNWKFYTEPRQLSKYALRTAIPARGTGPLAEQLRAGRYKVYQRDDLIYATKGTIG
HHHHHCCCCEECCHHHHHHHHHHHCCCCCCCCHHHHHHHCCCEEEEECCCEEEECCCCCC
RVGPIVVHVSLLLIMAGAMIGAFGGYQTQRMTLAGDSFDIQQVEQSRLSLARPPDWTVRV
CHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
NKFWIDYRPDGSVDQFHSDLSVVSPAGKELERKTISVNDPLIYDGVTMYQASWAVGAFKL
EEEEEEECCCCCHHHHHCCHHHCCCCCHHHHHCEEECCCCEEECCEEEEECCEEEEEEEE
RLNDSPVLTIPMQPIEAPNGQEAWGQAIPFDKDGRVALQMVTRGLQGSLMLLPFNPRTGE
EECCCCEEEEECCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHCCCCCCEEEEECCCCCCH
TVREAATPARVGKPVSVLGQRLVIEELVGQTGIQIKADPGIPVVYAGFALLMVGLAMSYL
HHHHHCCHHHCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHH
SHSQVWAIYRDGQLHVAGRTNRAQIGFERELVRMVAAVQTPRPRTSDALSAAQE
CCCCEEEEEECCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHCCH
>Mature Secondary Structure 
GSDGLQWVSRSLEHRPMTSLWRDIRHEVAAWLGSLKLAIGLFLAIAAASIAGTVIPQGE
CCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
STDFYRQNYPDSGAVVWGFVTWRFIISLGLDEVYRSWWFVALLLLLATSLTICTFRRQIP
CCCHHHHCCCCCCCEEHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
MLKAAQNWKFYTEPRQLSKYALRTAIPARGTGPLAEQLRAGRYKVYQRDDLIYATKGTIG
HHHHHCCCCEECCHHHHHHHHHHHCCCCCCCCHHHHHHHCCCEEEEECCCEEEECCCCCC
RVGPIVVHVSLLLIMAGAMIGAFGGYQTQRMTLAGDSFDIQQVEQSRLSLARPPDWTVRV
CHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
NKFWIDYRPDGSVDQFHSDLSVVSPAGKELERKTISVNDPLIYDGVTMYQASWAVGAFKL
EEEEEEECCCCCHHHHHCCHHHCCCCCHHHHHCEEECCCCEEECCEEEEECCEEEEEEEE
RLNDSPVLTIPMQPIEAPNGQEAWGQAIPFDKDGRVALQMVTRGLQGSLMLLPFNPRTGE
EECCCCEEEEECCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHCCCCCCEEEEECCCCCCH
TVREAATPARVGKPVSVLGQRLVIEELVGQTGIQIKADPGIPVVYAGFALLMVGLAMSYL
HHHHHCCHHHCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHH
SHSQVWAIYRDGQLHVAGRTNRAQIGFERELVRMVAAVQTPRPRTSDALSAAQE
CCCCEEEEEECCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 14621292