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The map label for this gene is ycfQ [C]

Identifier: 37521582

GI number: 37521582

Start: 2162883

End: 2164175

Strand: Reverse

Name: ycfQ [C]

Synonym: gll2013

Alternate gene names: 37521582

Gene position: 2164175-2162883 (Counterclockwise)

Preceding gene: 37521587

Following gene: 37521581

Centisome position: 46.45

GC content: 68.14

Gene sequence:

>1293_bases
ATGCCCCATCCAGAGCCTCTTGCCGCCGAACCGACCCGCGAGCGGGCGCTGCCTCCCCACGCCGGGCGGGGTCGGGCCAA
GCGCGAGCAGATTTTGCGCGGGGCGCTCGCGGTCTTTGCCCGGCACGGGTTTGCCGGCGCCAGCATGGACCGGCTTGCCA
GCGGTGCGCGCGTTTCCAAACCCACCCTCTACAGCCATTTCCAGAGCAAGGAAGGATTGTTCGTGGCGCTCTTTGAGTGG
GCCTGTGCGGTCCATCTGCACTGGGAAGCGCCCGAGGCGGCCGTGGGCGCCGAGGGCGAGCTGCAGGAGCAGATGGAGCG
GTGGCTGGCGATGGCGCTGACGCCCGAGGCGGTGTTTTTGCTGCAGACGGCCCTGAGTGAGTCGGCCCGGTTTCCGCAGT
TGGGGGAGCTGTACGTGCGCACGGCCCTGGAGCCTCTCAAAAGCCGTTTGCTCCCCTGCCTGCAGACTGACCGCGATCCG
GAGGCGGCAGCGACACTGCTCTGCTGTGCGCTGTTTGCCTTTGTCGGATTTAGCGAGATCCTGCGGGGACAGTGGGTGGC
GCCGGTCCAGCGCGGCGAGTTTGTCGATGGGCTGGCAGATCTGGTCTCGGGCCGCGCCGGGGTCGGGGAGGCGGCGGGGA
TAGCAACCCTTCCGGTCGAGCCTGAGCCCGTTCCATCGGAGGACGCCGGGGCCGACGAGCGGCGCGAACAAACCTTGCGC
GCGGCGATGGCGGTGTTTGTGGAGCACGGCTACACCGGGACGAGCATGGATATGGTCGCTGCCCACACGGGGCTGTCCAA
GCCGACCCTTTACAGCCACTTTCAAGACAAAGAGGGGCTGTTCTCGGAACTGATTGCCCGGGTGACGATCCGCCGTTCGT
TTTTGCTGCTGCAGCCGGGGCTGTTCGACGCGCCGACGGCGGTGGTGTTCGCCAGGCAGGCCGAGGCCCTCCTCGCCAAA
ATCGACGACCCGGAGTACCACGCGGTGGTGCGCCTGGTGCTCAGGGAGGCGGTGCGTTTTCCGGAACTGGGCAGACTGTA
CACGCGGACGGTCATGCAACCCGGCTTTCGCCTTTTGGGCACGTTCCTGCAGCACTGCCGCCCGCGGCGGTTGCCCCCGG
CGACGCTGACGGTGCTCTACTGCACGCCGCTCATCGGGTTTGTGCTCCTGCACGCGCTGCTCGGGGGCAGCCGGTGGTTC
CCCGTGGAGCGCGAGCGCTACAGTGCCTGCCTGGTGCGTCTTTTGACCGGGAGCGCCCCACAGGCCGAGCGCGAAGCGGG
CGAAGGGGCGTGA

Upstream 100 bases:

>100_bases
TTAACTACACGGTTTAGTAAAATCATAGGCCAGCTTTCCCGATGTGGATGCGCGCGGTGTGAAAATTTTTGTTGAATAAG
CCTGTAGTAGGATCGAGCCC

Downstream 100 bases:

>100_bases
TAAGATGAGCGCCGGGATCGGTCTTTTATAGAAGCAACTATTGTGGTCTATTTTCGCAAGATTTTGATTGCCAACCGGGG
CGAAGTGGCGCTGCGCATCC

Product: TetR family transcriptional regulatory protein

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator TetR Family Protein; Transcriptional Regulator; TetR Family Transcriptional Regulatory Protein; Transcriptional Regulator TetR

Number of amino acids: Translated: 430; Mature: 429

Protein sequence:

>430_residues
MPHPEPLAAEPTRERALPPHAGRGRAKREQILRGALAVFARHGFAGASMDRLASGARVSKPTLYSHFQSKEGLFVALFEW
ACAVHLHWEAPEAAVGAEGELQEQMERWLAMALTPEAVFLLQTALSESARFPQLGELYVRTALEPLKSRLLPCLQTDRDP
EAAATLLCCALFAFVGFSEILRGQWVAPVQRGEFVDGLADLVSGRAGVGEAAGIATLPVEPEPVPSEDAGADERREQTLR
AAMAVFVEHGYTGTSMDMVAAHTGLSKPTLYSHFQDKEGLFSELIARVTIRRSFLLLQPGLFDAPTAVVFARQAEALLAK
IDDPEYHAVVRLVLREAVRFPELGRLYTRTVMQPGFRLLGTFLQHCRPRRLPPATLTVLYCTPLIGFVLLHALLGGSRWF
PVERERYSACLVRLLTGSAPQAEREAGEGA

Sequences:

>Translated_430_residues
MPHPEPLAAEPTRERALPPHAGRGRAKREQILRGALAVFARHGFAGASMDRLASGARVSKPTLYSHFQSKEGLFVALFEW
ACAVHLHWEAPEAAVGAEGELQEQMERWLAMALTPEAVFLLQTALSESARFPQLGELYVRTALEPLKSRLLPCLQTDRDP
EAAATLLCCALFAFVGFSEILRGQWVAPVQRGEFVDGLADLVSGRAGVGEAAGIATLPVEPEPVPSEDAGADERREQTLR
AAMAVFVEHGYTGTSMDMVAAHTGLSKPTLYSHFQDKEGLFSELIARVTIRRSFLLLQPGLFDAPTAVVFARQAEALLAK
IDDPEYHAVVRLVLREAVRFPELGRLYTRTVMQPGFRLLGTFLQHCRPRRLPPATLTVLYCTPLIGFVLLHALLGGSRWF
PVERERYSACLVRLLTGSAPQAEREAGEGA
>Mature_429_residues
PHPEPLAAEPTRERALPPHAGRGRAKREQILRGALAVFARHGFAGASMDRLASGARVSKPTLYSHFQSKEGLFVALFEWA
CAVHLHWEAPEAAVGAEGELQEQMERWLAMALTPEAVFLLQTALSESARFPQLGELYVRTALEPLKSRLLPCLQTDRDPE
AAATLLCCALFAFVGFSEILRGQWVAPVQRGEFVDGLADLVSGRAGVGEAAGIATLPVEPEPVPSEDAGADERREQTLRA
AMAVFVEHGYTGTSMDMVAAHTGLSKPTLYSHFQDKEGLFSELIARVTIRRSFLLLQPGLFDAPTAVVFARQAEALLAKI
DDPEYHAVVRLVLREAVRFPELGRLYTRTVMQPGFRLLGTFLQHCRPRRLPPATLTVLYCTPLIGFVLLHALLGGSRWFP
VERERYSACLVRLLTGSAPQAEREAGEGA

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 47149; Mature: 47018

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPHPEPLAAEPTRERALPPHAGRGRAKREQILRGALAVFARHGFAGASMDRLASGARVSK
CCCCCCCCCCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCC
PTLYSHFQSKEGLFVALFEWACAVHLHWEAPEAAVGAEGELQEQMERWLAMALTPEAVFL
CHHHHHHCCCCCCEEEEEHHHHEEEEEECCCCHHCCCCCHHHHHHHHHHHHHCCHHHHHH
LQTALSESARFPQLGELYVRTALEPLKSRLLPCLQTDRDPEAAATLLCCALFAFVGFSEI
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
LRGQWVAPVQRGEFVDGLADLVSGRAGVGEAAGIATLPVEPEPVPSEDAGADERREQTLR
HCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHH
AAMAVFVEHGYTGTSMDMVAAHTGLSKPTLYSHFQDKEGLFSELIARVTIRRSFLLLQPG
HHHHHHHHCCCCCCCHHHHHHHCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHEECCC
LFDAPTAVVFARQAEALLAKIDDPEYHAVVRLVLREAVRFPELGRLYTRTVMQPGFRLLG
CCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHH
TFLQHCRPRRLPPATLTVLYCTPLIGFVLLHALLGGSRWFPVERERYSACLVRLLTGSAP
HHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCC
QAEREAGEGA
CHHHHCCCCC
>Mature Secondary Structure 
PHPEPLAAEPTRERALPPHAGRGRAKREQILRGALAVFARHGFAGASMDRLASGARVSK
CCCCCCCCCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCC
PTLYSHFQSKEGLFVALFEWACAVHLHWEAPEAAVGAEGELQEQMERWLAMALTPEAVFL
CHHHHHHCCCCCCEEEEEHHHHEEEEEECCCCHHCCCCCHHHHHHHHHHHHHCCHHHHHH
LQTALSESARFPQLGELYVRTALEPLKSRLLPCLQTDRDPEAAATLLCCALFAFVGFSEI
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
LRGQWVAPVQRGEFVDGLADLVSGRAGVGEAAGIATLPVEPEPVPSEDAGADERREQTLR
HCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHH
AAMAVFVEHGYTGTSMDMVAAHTGLSKPTLYSHFQDKEGLFSELIARVTIRRSFLLLQPG
HHHHHHHHCCCCCCCHHHHHHHCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHEECCC
LFDAPTAVVFARQAEALLAKIDDPEYHAVVRLVLREAVRFPELGRLYTRTVMQPGFRLLG
CCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHH
TFLQHCRPRRLPPATLTVLYCTPLIGFVLLHALLGGSRWFPVERERYSACLVRLLTGSAP
HHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCC
QAEREAGEGA
CHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA