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The map label for this gene is cpeC [H]

Identifier: 37520832

GI number: 37520832

Start: 1340133

End: 1340990

Strand: Direct

Name: cpeC [H]

Synonym: gvip181

Alternate gene names: 37520832

Gene position: 1340133-1340990 (Clockwise)

Preceding gene: 37520831

Following gene: 37520833

Centisome position: 28.76

GC content: 59.67

Gene sequence:

>858_bases
ATGGCCATCGGTCCGGCATCAGAGCTCGGTATCAGCCTGTTTGAAGACACAGATCCAGTTGAGTTGAAACCTGGGCGCTC
CGTTGAAGAAGTGGAAACGGTGATTCGGGCGGTTTATCGACAGGTTTTGGGCAACGCGTATGTGATGGAGAGTGAGCGGC
TGGTCGTTCCCGAGTCGCAGCTGAAGCTCGGGGAGATTAGCGTGCGCGAATTTGTACGCGAAGTCGCCAAGTCCGAATTT
TACCGCAAGCGTTTCTTCGACGCTGTTCCTCGCTACCGCGCCATCGAGCTGAACTTCAAGCACCTGTTGGGCCGCGCTCC
CAACAGTTATGCCGAGATGGCCGAGCACAGCAAGATCCTCGATGCCGGTGGCCACGACGCCGAGATCGATTCGTATCTTG
ATTGCGACGAATACCAGGACGCCTACGGCGAATTGACGGTGCCTTTTTATCGGGGCTACCGCAGCCAGCCGGGCCAGACG
ATGGTCGAATTCACCCACATGTTCAAGTTGCTGCGCGGCGCTGCCACCAGCGATAAAGCGAGCCTGCCGGATCTGGCCAC
TCCGCGGCTCAATCGCCTGATCATCCAGGGAACGGCGGTGCCGGTGCTCACCATCAACACGCTGCCCACCTCCGAGAAGA
CCCAGTACAACGTGCTGACCGGCAACTCGGAGTGGGCGAGCAAGGTCCTGCGCATCACGGTGGGCCAGGCCCCCGTCCCC
ACCGACGGCCTCGACACCTACGATCCGAGCGACAGCAGCTACTCGGTCGTCGTACCGCTCAACCGCATGCTCACCGAGAT
GCAGAACATCAAGCGCAAGGGCGGGCGCATTTTGAATATCACCTCCATCGTCGCCTAA

Upstream 100 bases:

>100_bases
CTGTAAACACGGTTCTGTCACAAATGTCACAAATCTTGACGATTCAAGATGCAACTTTGAACAATAATACGTAGGCGAAT
GTCTAGCGAGGAGGCAGTGC

Downstream 100 bases:

>100_bases
GGGCCGATAGCAGGAGAGCGCACTGCGACGGCTGTGATTTACCGACCGGAGTCCAACAGCGCAGCCGTCCTGTCCGTCGA
GCGTCCCAAAAGGAGAACCG

Product: phycoerythrin-associated linker protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 285; Mature: 284

Protein sequence:

>285_residues
MAIGPASELGISLFEDTDPVELKPGRSVEEVETVIRAVYRQVLGNAYVMESERLVVPESQLKLGEISVREFVREVAKSEF
YRKRFFDAVPRYRAIELNFKHLLGRAPNSYAEMAEHSKILDAGGHDAEIDSYLDCDEYQDAYGELTVPFYRGYRSQPGQT
MVEFTHMFKLLRGAATSDKASLPDLATPRLNRLIIQGTAVPVLTINTLPTSEKTQYNVLTGNSEWASKVLRITVGQAPVP
TDGLDTYDPSDSSYSVVVPLNRMLTEMQNIKRKGGRILNITSIVA

Sequences:

>Translated_285_residues
MAIGPASELGISLFEDTDPVELKPGRSVEEVETVIRAVYRQVLGNAYVMESERLVVPESQLKLGEISVREFVREVAKSEF
YRKRFFDAVPRYRAIELNFKHLLGRAPNSYAEMAEHSKILDAGGHDAEIDSYLDCDEYQDAYGELTVPFYRGYRSQPGQT
MVEFTHMFKLLRGAATSDKASLPDLATPRLNRLIIQGTAVPVLTINTLPTSEKTQYNVLTGNSEWASKVLRITVGQAPVP
TDGLDTYDPSDSSYSVVVPLNRMLTEMQNIKRKGGRILNITSIVA
>Mature_284_residues
AIGPASELGISLFEDTDPVELKPGRSVEEVETVIRAVYRQVLGNAYVMESERLVVPESQLKLGEISVREFVREVAKSEFY
RKRFFDAVPRYRAIELNFKHLLGRAPNSYAEMAEHSKILDAGGHDAEIDSYLDCDEYQDAYGELTVPFYRGYRSQPGQTM
VEFTHMFKLLRGAATSDKASLPDLATPRLNRLIIQGTAVPVLTINTLPTSEKTQYNVLTGNSEWASKVLRITVGQAPVPT
DGLDTYDPSDSSYSVVVPLNRMLTEMQNIKRKGGRILNITSIVA

Specific function: Rod linker protein, associated with phycoerythrocyanin. Linker polypeptides determine the state of aggregation and the location of the disk-shaped phycobiliprotein units within the phycobilisome and modulate their spectroscopic properties in order to medi

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein; Cytoplasmic side. Note=Associated with phycoerythrin [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PBS-linker domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001297
- InterPro:   IPR016470
- InterPro:   IPR008213
- ProDom:   PD000852 [H]

Pfam domain/function: PF01383 CpcD; PF00427 PBS_linker_poly [H]

EC number: NA

Molecular weight: Translated: 31826; Mature: 31694

Theoretical pI: Translated: 5.24; Mature: 5.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIGPASELGISLFEDTDPVELKPGRSVEEVETVIRAVYRQVLGNAYVMESERLVVPESQ
CCCCCCHHHCEEEECCCCCCEECCCCCHHHHHHHHHHHHHHHHCCEEEECCCCEECCHHH
LKLGEISVREFVREVAKSEFYRKRFFDAVPRYRAIELNFKHLLGRAPNSYAEMAEHSKIL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHCCCCCHHHHHHHHHHHH
DAGGHDAEIDSYLDCDEYQDAYGELTVPFYRGYRSQPGQTMVEFTHMFKLLRGAATSDKA
CCCCCCCCCCCCCCCHHHHHHHCCEECHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCC
SLPDLATPRLNRLIIQGTAVPVLTINTLPTSEKTQYNVLTGNSEWASKVLRITVGQAPVP
CCCCCCCCCCCEEEEECCCEEEEEEECCCCCCCCEEEEEECCHHHHHHHHHEEECCCCCC
TDGLDTYDPSDSSYSVVVPLNRMLTEMQNIKRKGGRILNITSIVA
CCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHCCEEEEEHHHCC
>Mature Secondary Structure 
AIGPASELGISLFEDTDPVELKPGRSVEEVETVIRAVYRQVLGNAYVMESERLVVPESQ
CCCCCHHHCEEEECCCCCCEECCCCCHHHHHHHHHHHHHHHHCCEEEECCCCEECCHHH
LKLGEISVREFVREVAKSEFYRKRFFDAVPRYRAIELNFKHLLGRAPNSYAEMAEHSKIL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHCCCCCHHHHHHHHHHHH
DAGGHDAEIDSYLDCDEYQDAYGELTVPFYRGYRSQPGQTMVEFTHMFKLLRGAATSDKA
CCCCCCCCCCCCCCCHHHHHHHCCEECHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCC
SLPDLATPRLNRLIIQGTAVPVLTINTLPTSEKTQYNVLTGNSEWASKVLRITVGQAPVP
CCCCCCCCCCCEEEEECCCEEEEEEECCCCCCCCEEEEEECCHHHHHHHHHEEECCCCCC
TDGLDTYDPSDSSYSVVVPLNRMLTEMQNIKRKGGRILNITSIVA
CCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHCCEEEEEHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1694529 [H]