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The map label for this gene is cpeD [H]

Identifier: 37520833

GI number: 37520833

Start: 1341094

End: 1341861

Strand: Direct

Name: cpeD [H]

Synonym: gvip182

Alternate gene names: 37520833

Gene position: 1341094-1341861 (Clockwise)

Preceding gene: 37520832

Following gene: 37520834

Centisome position: 28.78

GC content: 60.94

Gene sequence:

>768_bases
ATGAGTACAGTGATGACCGGGGCAGTGGGTGCGGGCGATCTGGGCCTGTACCTTTCTTCGAACAGCGCCCCCGACGAAGT
GGAGATCGTCATCCGGGCAGTTTACAAGCAGGTGCTCGGCAACCCGCACCTGATGGAGAGCGAACGGCTGGTACGCGACG
AATCGAAGCTCAAAAACAGCGAAATCTCGGTGCGCGAATTCGTGCGCACGGTGGCCAAATCCGAGCTGTACCGCTCACGC
TTCTTTGAGACCTGCGGCCCCTACCGATTTATCGAACTGAACTTCAAACACCTGTTGGGCCGCGCCCCGCTCGATCAAAC
CGAGATCTCGGTGCACGTGCGCCTGTGCGTCGAGCAGGGCTACGACGCGGAAATTGATTCGTACCTCGATTCTGACGAGT
ACCAGGACGCTTTTGGCGAGGATACCGTGCCGTTCCCGCGCGGATCGCTCAGCCAGGTAGGCCAGAAGCAAGTGGGCTTC
AACCGCATGTCCTTCCTGCTGCGCGGCCCGGCCGAAGCCGACAAGGGCGTCAAAGAGGCGCAATTGCTCTACTCGGTCGC
CACCAACAGCTCGACCCGCGTGCAGCCGCCTTTGCGCCCCGGCAACACAGCCAAATCGTTCCGCATCGTCGTCTCGGGCG
CCAAATACACCGGTCGCCTGCGCAGAAGCACCGTCGAATATCTGGTCCCCGCCAACCACATGACAGCCCAGATCCAGCGG
ATCAACCGGACGAGCGGCACCATCGTCAGCATCACCGAAGTTGTCTAG

Upstream 100 bases:

>100_bases
CCGATAGCAGGAGAGCGCACTGCGACGGCTGTGATTTACCGACCGGAGTCCAACAGCGCAGCCGTCCTGTCCGTCGAGCG
TCCCAAAAGGAGAACCGACC

Downstream 100 bases:

>100_bases
CATCTAATACCTGTCTCGCTTTTGGGTGCGATTGCGGCGGGCGCGTCTTTCGCGCCCCCTTTTGAAGACGTCAACTTTGG
ATATAGGAGAACCGCCATGT

Product: phycoerythrin-associated linker protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 255; Mature: 254

Protein sequence:

>255_residues
MSTVMTGAVGAGDLGLYLSSNSAPDEVEIVIRAVYKQVLGNPHLMESERLVRDESKLKNSEISVREFVRTVAKSELYRSR
FFETCGPYRFIELNFKHLLGRAPLDQTEISVHVRLCVEQGYDAEIDSYLDSDEYQDAFGEDTVPFPRGSLSQVGQKQVGF
NRMSFLLRGPAEADKGVKEAQLLYSVATNSSTRVQPPLRPGNTAKSFRIVVSGAKYTGRLRRSTVEYLVPANHMTAQIQR
INRTSGTIVSITEVV

Sequences:

>Translated_255_residues
MSTVMTGAVGAGDLGLYLSSNSAPDEVEIVIRAVYKQVLGNPHLMESERLVRDESKLKNSEISVREFVRTVAKSELYRSR
FFETCGPYRFIELNFKHLLGRAPLDQTEISVHVRLCVEQGYDAEIDSYLDSDEYQDAFGEDTVPFPRGSLSQVGQKQVGF
NRMSFLLRGPAEADKGVKEAQLLYSVATNSSTRVQPPLRPGNTAKSFRIVVSGAKYTGRLRRSTVEYLVPANHMTAQIQR
INRTSGTIVSITEVV
>Mature_254_residues
STVMTGAVGAGDLGLYLSSNSAPDEVEIVIRAVYKQVLGNPHLMESERLVRDESKLKNSEISVREFVRTVAKSELYRSRF
FETCGPYRFIELNFKHLLGRAPLDQTEISVHVRLCVEQGYDAEIDSYLDSDEYQDAFGEDTVPFPRGSLSQVGQKQVGFN
RMSFLLRGPAEADKGVKEAQLLYSVATNSSTRVQPPLRPGNTAKSFRIVVSGAKYTGRLRRSTVEYLVPANHMTAQIQRI
NRTSGTIVSITEVV

Specific function: Rod linker protein, associated with phycoerythrin. Linker polypeptides determine the state of aggregation and the location of the disk-shaped phycobiliprotein units within the phycobilisome and modulate their spectroscopic properties in order to mediate a

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein; Cytoplasmic side. Note=Associated with phycoerythrin [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PBS-linker domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001297
- InterPro:   IPR016470
- InterPro:   IPR008213
- ProDom:   PD000852 [H]

Pfam domain/function: PF01383 CpcD; PF00427 PBS_linker_poly [H]

EC number: NA

Molecular weight: Translated: 28401; Mature: 28269

Theoretical pI: Translated: 8.19; Mature: 8.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTVMTGAVGAGDLGLYLSSNSAPDEVEIVIRAVYKQVLGNPHLMESERLVRDESKLKNS
CCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCC
EISVREFVRTVAKSELYRSRFFETCGPYRFIELNFKHLLGRAPLDQTEISVHVRLCVEQG
CCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHHCCCCCCCCCEEEEEEEEECCC
YDAEIDSYLDSDEYQDAFGEDTVPFPRGSLSQVGQKQVGFNRMSFLLRGPAEADKGVKEA
CCCCHHHHCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHCHHHHHHHHCCCCHHHCCHHHH
QLLYSVATNSSTRVQPPLRPGNTAKSFRIVVSGAKYTGRLRRSTVEYLVPANHMTAQIQR
HHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHCCCHHHHHHHHH
INRTSGTIVSITEVV
HHCCCCCEEEEEECC
>Mature Secondary Structure 
STVMTGAVGAGDLGLYLSSNSAPDEVEIVIRAVYKQVLGNPHLMESERLVRDESKLKNS
CCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCC
EISVREFVRTVAKSELYRSRFFETCGPYRFIELNFKHLLGRAPLDQTEISVHVRLCVEQG
CCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHHCCCCCCCCCEEEEEEEEECCC
YDAEIDSYLDSDEYQDAFGEDTVPFPRGSLSQVGQKQVGFNRMSFLLRGPAEADKGVKEA
CCCCHHHHCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHCHHHHHHHHCCCCHHHCCHHHH
QLLYSVATNSSTRVQPPLRPGNTAKSFRIVVSGAKYTGRLRRSTVEYLVPANHMTAQIQR
HHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHCCCHHHHHHHHH
INRTSGTIVSITEVV
HHCCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1694529 [H]