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The map label for this gene is cpcC [H]

Identifier: 37520831

GI number: 37520831

Start: 1337476

End: 1339950

Strand: Direct

Name: cpcC [H]

Synonym: glr1262

Alternate gene names: 37520831

Gene position: 1337476-1339950 (Clockwise)

Preceding gene: 37520830

Following gene: 37520832

Centisome position: 28.71

GC content: 63.31

Gene sequence:

>2475_bases
ATGTCAACTGTCCTTGATGACCAATCCAAGGCCTACGCCCCCGGTTCCGCGAACGGACCGACCGCCGGGCTGGAACCCTT
CGTGCGCATGTCGCGGATGATCCGCTCCGGGGTGCCGGAGGATCGCGAGGAGCCCGACGAACTGTGGCTTTCGATGGTGC
GCGATATCTTCGGCCGCGGTTACATGGACCGGCTGAGCCAGACGCGCGCTATCGACTACAGTGCGTTTGTGCGCCCCGCC
GATCAGGCGACCGCCGACGGGGCCGCCCAGACCAAATTGGGGATCACCGCGATTGCCCCGGATCAAGGCGTCGAGTTGCG
CCCGAATTTTACCGAAGCCGATGTGATAACGGTAATCCGCGCCGCCTACAAACAGCTTTTCGGCAATACCTACATTCTCG
AGTCCGAGCGGGTCATCCAGGCAGAGTCGCTGTTGCGCAACGGCTCGATTAGCGTTCGCGAATTTATCCGGATCCTGGCC
AAGTCGGATCTGTACAAGGAGCGCTTCTTCCGCTGCACGTCAAACAACCGCTTCATCGAGCTGAACCTCAAGCATCTGTT
GGGCCGCGCTCCCTACAACCAGGGCGAAATCGCCGAGCACCTCGATCGCTACTGCCAGTCGGGCTATGACGCAGAAATCG
ATTCTTACATCGACTCCGACGAGTACCGGCGGGTGTTTGGCGAAAATACCGTGCCTTACTTCCGCGGCTTCAAGTACCAG
GTCGGTCAGTCCGCCGCCGCCTTCGAGCGCATGCGCGCCCTCTACAGCGGCGATGCCGGCAGCGACACCGACCGCAACCA
GAACGGCCAGCGCACCGAACTGACCTCCGGGCTCGCCGATCCGGCTCAGCCCGTGCGCGCGCGCACGGACTACGCCCTCA
CCCGCGTCGATATTCCGGGGGGTAACGGTGCGGCCGGTAGGCTCGCTGCTCTCGACGAGAGCCTGGGCAGTTGGCTCGAT
GCCGCCCGCGACCTGATTTCCCAGAACGACTACAGCCAGAAGGCGATCGAAGTCGAGCCGAAGCGGGTGGCACCCTACGC
GCAGTATCTGACCCCCGCCGTCGAAGCCACCCCTGACGCCGCCGCCCAGACGAAGCTCGGCATTACCGCCGTCGCTCCCG
ACCAGGCGGTCGAGTTGCGCCCCAACTTCGGCGAAGCCGAGGTGCAGGCAGTGATCCGCGCCGCCTACAAGCAGATCTTC
GGCAACACCTATATCCTCGAAGCGGACCGGGTGGTGATTGCAGAATCGCTGTTGCGCAACGGTTCGATTAGTGTCCGTGA
GTTCGTGCGATTGCTGGCCAAGTCGGATCTGTACAGGGACCGTTTCTTCCGCACCGCCTCCAACAACCGCTTCATCGAAC
TGAACTTCAAACATTTCCTGGGCCGCGCTCCCTACAGCCAGGCGGAAATCGGCGAACACTTCAACCGCTATCACAAGTCG
GGTTACGACGCGGAGATCGATTCTTACATCGACTCCGACGAGTACCGGCGGGTGTTTGGCGAAAATACCGTGCCTTACTT
CCGCGGCTTCAAGTACCAGGTCGGCCAAGCCGCCCGGGGCTTCGACCAGATGCAGCAGCTGTTTGCCGGGGATGCCGGCA
GCGACACCGACCGGGGTATCGGCGCCCAACCTGCCGCCAAGCTCACGTTTCCCCTCTCGCGGCCGCTCGGGGTGACCTCG
GCCTACTTCCCGTCCTCCCAGGGCGGGGCTGCCACCAGCGACGGATTGGAGATGTTCACCCGCATGGCCCGGGAGTTGAC
CGTCACCCCCGTCTCTGCCCGCAGGACGACGTCCCCCACCGCCCCCACCGCCCCGGCGATGCCGCTGGCGGGCTACTACA
GCCGTCCCGCCCCCCGGGCGACCGCCGACGGGGACGCCCAGACGAAGCTCGGCATCACGGCGGTGGCCCCCGCCCAGGCG
GTGGAGTTGCGCCCCAATTTCGGCGAGACCGAGTTGCAGGCAGTGATCCGCGCCACCTACAAGCAACTGTTCGGCAACAC
CTACATCCTCGAAGCCGATCGGGTGGTGCAGGCAGAATCGCTCTTGCGCAACGGTTCGATCAACGTGCGCGAATTTGTGC
GGTTACTGGCCAAGTCCGAACTGTACAAGGAGCGCTTCTTCCACTGCACCTCCAACAACCGCTTCATCGAACTCACCTTC
AAGCACCTGTTGGGCCGCGCCCCCTACAACCAGTCGGAGTTTGTCGAGCACCTCGACCGCTACCAGAAATCCGGCTACGA
CGCGGAGATCGATTCTTACATCGACAGTGATGAGTACCGGCGGGTGTTTGGCGAAAATACCGTGCCCTACTTCCGCGGCT
TCAAGTACCAGACCGGTCAGGCCGCCGGGGTCTTCGAGCGCACCCTCAAGCTCTACGGCGGCGATGCCGACAGCGATACC
AATCGCAATCGGCAGGGCCAGCTGCGCCAGGTAGACCCCCAGGAACTGCTGCGCTCAGGTCGCGGTATCGTATAG

Upstream 100 bases:

>100_bases
GGTTGGGACTGTTTTGGCTTTTAAAGCGCTGCTATCATTGACGGCGAGTCAGCGGCTCACAAATCTTGTCTGTCAATCGA
GAGAGTAGGGAGAACGCGCC

Downstream 100 bases:

>100_bases
TCAATTCCTCATTCTCTAGCGCTTGCTGCGCATCGCTCATCGGTGCGCAGCAAGCGCTGGGAATTTTTGATGGTAAACAA
ATCTGTAAACACGGTTCTGT

Product: putative phycobiliprotein linker

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 824; Mature: 823

Protein sequence:

>824_residues
MSTVLDDQSKAYAPGSANGPTAGLEPFVRMSRMIRSGVPEDREEPDELWLSMVRDIFGRGYMDRLSQTRAIDYSAFVRPA
DQATADGAAQTKLGITAIAPDQGVELRPNFTEADVITVIRAAYKQLFGNTYILESERVIQAESLLRNGSISVREFIRILA
KSDLYKERFFRCTSNNRFIELNLKHLLGRAPYNQGEIAEHLDRYCQSGYDAEIDSYIDSDEYRRVFGENTVPYFRGFKYQ
VGQSAAAFERMRALYSGDAGSDTDRNQNGQRTELTSGLADPAQPVRARTDYALTRVDIPGGNGAAGRLAALDESLGSWLD
AARDLISQNDYSQKAIEVEPKRVAPYAQYLTPAVEATPDAAAQTKLGITAVAPDQAVELRPNFGEAEVQAVIRAAYKQIF
GNTYILEADRVVIAESLLRNGSISVREFVRLLAKSDLYRDRFFRTASNNRFIELNFKHFLGRAPYSQAEIGEHFNRYHKS
GYDAEIDSYIDSDEYRRVFGENTVPYFRGFKYQVGQAARGFDQMQQLFAGDAGSDTDRGIGAQPAAKLTFPLSRPLGVTS
AYFPSSQGGAATSDGLEMFTRMARELTVTPVSARRTTSPTAPTAPAMPLAGYYSRPAPRATADGDAQTKLGITAVAPAQA
VELRPNFGETELQAVIRATYKQLFGNTYILEADRVVQAESLLRNGSINVREFVRLLAKSELYKERFFHCTSNNRFIELTF
KHLLGRAPYNQSEFVEHLDRYQKSGYDAEIDSYIDSDEYRRVFGENTVPYFRGFKYQTGQAAGVFERTLKLYGGDADSDT
NRNRQGQLRQVDPQELLRSGRGIV

Sequences:

>Translated_824_residues
MSTVLDDQSKAYAPGSANGPTAGLEPFVRMSRMIRSGVPEDREEPDELWLSMVRDIFGRGYMDRLSQTRAIDYSAFVRPA
DQATADGAAQTKLGITAIAPDQGVELRPNFTEADVITVIRAAYKQLFGNTYILESERVIQAESLLRNGSISVREFIRILA
KSDLYKERFFRCTSNNRFIELNLKHLLGRAPYNQGEIAEHLDRYCQSGYDAEIDSYIDSDEYRRVFGENTVPYFRGFKYQ
VGQSAAAFERMRALYSGDAGSDTDRNQNGQRTELTSGLADPAQPVRARTDYALTRVDIPGGNGAAGRLAALDESLGSWLD
AARDLISQNDYSQKAIEVEPKRVAPYAQYLTPAVEATPDAAAQTKLGITAVAPDQAVELRPNFGEAEVQAVIRAAYKQIF
GNTYILEADRVVIAESLLRNGSISVREFVRLLAKSDLYRDRFFRTASNNRFIELNFKHFLGRAPYSQAEIGEHFNRYHKS
GYDAEIDSYIDSDEYRRVFGENTVPYFRGFKYQVGQAARGFDQMQQLFAGDAGSDTDRGIGAQPAAKLTFPLSRPLGVTS
AYFPSSQGGAATSDGLEMFTRMARELTVTPVSARRTTSPTAPTAPAMPLAGYYSRPAPRATADGDAQTKLGITAVAPAQA
VELRPNFGETELQAVIRATYKQLFGNTYILEADRVVQAESLLRNGSINVREFVRLLAKSELYKERFFHCTSNNRFIELTF
KHLLGRAPYNQSEFVEHLDRYQKSGYDAEIDSYIDSDEYRRVFGENTVPYFRGFKYQTGQAAGVFERTLKLYGGDADSDT
NRNRQGQLRQVDPQELLRSGRGIV
>Mature_823_residues
STVLDDQSKAYAPGSANGPTAGLEPFVRMSRMIRSGVPEDREEPDELWLSMVRDIFGRGYMDRLSQTRAIDYSAFVRPAD
QATADGAAQTKLGITAIAPDQGVELRPNFTEADVITVIRAAYKQLFGNTYILESERVIQAESLLRNGSISVREFIRILAK
SDLYKERFFRCTSNNRFIELNLKHLLGRAPYNQGEIAEHLDRYCQSGYDAEIDSYIDSDEYRRVFGENTVPYFRGFKYQV
GQSAAAFERMRALYSGDAGSDTDRNQNGQRTELTSGLADPAQPVRARTDYALTRVDIPGGNGAAGRLAALDESLGSWLDA
ARDLISQNDYSQKAIEVEPKRVAPYAQYLTPAVEATPDAAAQTKLGITAVAPDQAVELRPNFGEAEVQAVIRAAYKQIFG
NTYILEADRVVIAESLLRNGSISVREFVRLLAKSDLYRDRFFRTASNNRFIELNFKHFLGRAPYSQAEIGEHFNRYHKSG
YDAEIDSYIDSDEYRRVFGENTVPYFRGFKYQVGQAARGFDQMQQLFAGDAGSDTDRGIGAQPAAKLTFPLSRPLGVTSA
YFPSSQGGAATSDGLEMFTRMARELTVTPVSARRTTSPTAPTAPAMPLAGYYSRPAPRATADGDAQTKLGITAVAPAQAV
ELRPNFGETELQAVIRATYKQLFGNTYILEADRVVQAESLLRNGSINVREFVRLLAKSELYKERFFHCTSNNRFIELTFK
HLLGRAPYNQSEFVEHLDRYQKSGYDAEIDSYIDSDEYRRVFGENTVPYFRGFKYQTGQAAGVFERTLKLYGGDADSDTN
RNRQGQLRQVDPQELLRSGRGIV

Specific function: Rod linker protein, associated with phycocyanin. Linker polypeptides determine the state of aggregation and the location of the disk-shaped phycobiliprotein units within the phycobilisome and modulate their spectroscopic properties in order to mediate a d

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein; Cytoplasmic side. Note=This protein occurs in the rod, it is associated with phycocyanin [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PBS-linker domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001297
- InterPro:   IPR016470
- InterPro:   IPR008213
- ProDom:   PD000852 [H]

Pfam domain/function: PF01383 CpcD; PF00427 PBS_linker_poly [H]

EC number: NA

Molecular weight: Translated: 92021; Mature: 91889

Theoretical pI: Translated: 6.03; Mature: 6.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTVLDDQSKAYAPGSANGPTAGLEPFVRMSRMIRSGVPEDREEPDELWLSMVRDIFGRG
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCC
YMDRLSQTRAIDYSAFVRPADQATADGAAQTKLGITAIAPDQGVELRPNFTEADVITVIR
HHHHHHHHHCCCHHHHCCCCHHHCCCCCCHHCCCEEEECCCCCCEECCCCCHHHHHHHHH
AAYKQLFGNTYILESERVIQAESLLRNGSISVREFIRILAKSDLYKERFFRCTSNNRFIE
HHHHHHHCCEEEECCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHEECCCCCEEE
LNLKHLLGRAPYNQGEIAEHLDRYCQSGYDAEIDSYIDSDEYRRVFGENTVPYFRGFKYQ
EEHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCHHHHCCCHHHHHHHCCCCCHHHCCCHHH
VGQSAAAFERMRALYSGDAGSDTDRNQNGQRTELTSGLADPAQPVRARTDYALTRVDIPG
HCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCHHHHHCCCEEEEEEECCC
GNGAAGRLAALDESLGSWLDAARDLISQNDYSQKAIEVEPKRVAPYAQYLTPAVEATPDA
CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCHHHCHHHHHHCCHHHCCCCH
AAQTKLGITAVAPDQAVELRPNFGEAEVQAVIRAAYKQIFGNTYILEADRVVIAESLLRN
HHHHCCCEEEECCCCCEEECCCCCHHHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHHC
GSISVREFVRLLAKSDLYRDRFFRTASNNRFIELNFKHFLGRAPYSQAEIGEHFNRYHKS
CCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHCCCCCCHHHHHHHHHHHHCC
GYDAEIDSYIDSDEYRRVFGENTVPYFRGFKYQVGQAARGFDQMQQLFAGDAGSDTDRGI
CCCCHHHHHCCCHHHHHHHCCCCCHHHCCCHHHHHHHHCCHHHHHHHHCCCCCCCCCCCC
GAQPAAKLTFPLSRPLGVTSAYFPSSQGGAATSDGLEMFTRMARELTVTPVSARRTTSPT
CCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHEECCCCCCCCCCCCC
APTAPAMPLAGYYSRPAPRATADGDAQTKLGITAVAPAQAVELRPNFGETELQAVIRATY
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHEEECCCCCHHHHHHHHHHHH
KQLFGNTYILEADRVVQAESLLRNGSINVREFVRLLAKSELYKERFFHCTSNNRFIELTF
HHHHCCEEEEECHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHEEECCCCCEEEEEH
KHLLGRAPYNQSEFVEHLDRYQKSGYDAEIDSYIDSDEYRRVFGENTVPYFRGFKYQTGQ
HHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHCCCHHHHHHHCCCCCHHHCCCCCCCCC
AAGVFERTLKLYGGDADSDTNRNRQGQLRQVDPQELLRSGRGIV
HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCC
>Mature Secondary Structure 
STVLDDQSKAYAPGSANGPTAGLEPFVRMSRMIRSGVPEDREEPDELWLSMVRDIFGRG
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCC
YMDRLSQTRAIDYSAFVRPADQATADGAAQTKLGITAIAPDQGVELRPNFTEADVITVIR
HHHHHHHHHCCCHHHHCCCCHHHCCCCCCHHCCCEEEECCCCCCEECCCCCHHHHHHHHH
AAYKQLFGNTYILESERVIQAESLLRNGSISVREFIRILAKSDLYKERFFRCTSNNRFIE
HHHHHHHCCEEEECCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHEECCCCCEEE
LNLKHLLGRAPYNQGEIAEHLDRYCQSGYDAEIDSYIDSDEYRRVFGENTVPYFRGFKYQ
EEHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCHHHHCCCHHHHHHHCCCCCHHHCCCHHH
VGQSAAAFERMRALYSGDAGSDTDRNQNGQRTELTSGLADPAQPVRARTDYALTRVDIPG
HCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCHHHHHCCCEEEEEEECCC
GNGAAGRLAALDESLGSWLDAARDLISQNDYSQKAIEVEPKRVAPYAQYLTPAVEATPDA
CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCHHHCHHHHHHCCHHHCCCCH
AAQTKLGITAVAPDQAVELRPNFGEAEVQAVIRAAYKQIFGNTYILEADRVVIAESLLRN
HHHHCCCEEEECCCCCEEECCCCCHHHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHHC
GSISVREFVRLLAKSDLYRDRFFRTASNNRFIELNFKHFLGRAPYSQAEIGEHFNRYHKS
CCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHCCCCCCHHHHHHHHHHHHCC
GYDAEIDSYIDSDEYRRVFGENTVPYFRGFKYQVGQAARGFDQMQQLFAGDAGSDTDRGI
CCCCHHHHHCCCHHHHHHHCCCCCHHHCCCHHHHHHHHCCHHHHHHHHCCCCCCCCCCCC
GAQPAAKLTFPLSRPLGVTSAYFPSSQGGAATSDGLEMFTRMARELTVTPVSARRTTSPT
CCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHEECCCCCCCCCCCCC
APTAPAMPLAGYYSRPAPRATADGDAQTKLGITAVAPAQAVELRPNFGETELQAVIRATY
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHEEECCCCCHHHHHHHHHHHH
KQLFGNTYILEADRVVQAESLLRNGSINVREFVRLLAKSELYKERFFHCTSNNRFIELTF
HHHHCCEEEEECHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHEEECCCCCEEEEEH
KHLLGRAPYNQSEFVEHLDRYQKSGYDAEIDSYIDSDEYRRVFGENTVPYFRGFKYQTGQ
HHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHCCCHHHHHHHCCCCCHHHCCCCCCCCC
AAGVFERTLKLYGGDADSDTNRNRQGQLRQVDPQELLRSGRGIV
HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 3109890; 11237320; 11759840; 1743523 [H]