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The map label for this gene is ndhC

Identifier: 37520317

GI number: 37520317

Start: 799054

End: 799416

Strand: Direct

Name: ndhC

Synonym: gvip080

Alternate gene names: 37520317

Gene position: 799054-799416 (Clockwise)

Preceding gene: 37520316

Following gene: 37520318

Centisome position: 17.15

GC content: 58.95

Gene sequence:

>363_bases
GTGTTTGTTCTTTCCGGTTACGACGCCCTGCTCATCTTTTTGTTGTTGAGCGCCCTGGTCCCGGTACTGGCCCTCACCAT
CTCCTATCTCATCCGTCCCAAAGGTTCCGGCGCCTTCCGCACCACCACCTACGAATCGGGGGTCGATCCGCGCGGCGACA
GCTGGATCCAGTTCAACATCCGCTATTACATGTTCGCCCTGGTTTTCGTCGTCTTCGACGTGGAGACGGTGTTTCTCTAT
CCCTGGGCCGTGGCGTTCAACCAGCTGGGACTGCTCGCGTTTATCGAAGCGCTGATCTTTATCGCCATTCTGGTGGTCGC
CCTGGTCTACGCCTGGCGCAAGGGCGCCCTCGAGTGGACCTGA

Upstream 100 bases:

>100_bases
AACCCACGCGCTCGCAAGCCTGTCAAGGCGAGGTCCGCTCGGGCCTCGGCCGTACAGCTGCGTTACACTGAAGGACACAA
CCGTTACTTCACAAAACGCA

Downstream 100 bases:

>100_bases
TTCGACCCGACTGTATATTCTGCATCCACCCACCCCGCACGGGCGCAAGCCCCAAGACGCCATGGACATCAAGAACCTGC
TCAACCCGATCGAGCGCCCC

Product: NADH dehydrogenase subunit A

Products: NAD+; ubiquinol

Alternate protein names: NAD(P)H dehydrogenase subunit 3; NADH-plastoquinone oxidoreductase subunit 3; NDH-1 subunit 3; NDH-C

Number of amino acids: Translated: 120; Mature: 120

Protein sequence:

>120_residues
MFVLSGYDALLIFLLLSALVPVLALTISYLIRPKGSGAFRTTTYESGVDPRGDSWIQFNIRYYMFALVFVVFDVETVFLY
PWAVAFNQLGLLAFIEALIFIAILVVALVYAWRKGALEWT

Sequences:

>Translated_120_residues
MFVLSGYDALLIFLLLSALVPVLALTISYLIRPKGSGAFRTTTYESGVDPRGDSWIQFNIRYYMFALVFVVFDVETVFLY
PWAVAFNQLGLLAFIEALIFIAILVVALVYAWRKGALEWT
>Mature_120_residues
MFVLSGYDALLIFLLLSALVPVLALTISYLIRPKGSGAFRTTTYESGVDPRGDSWIQFNIRYYMFALVFVVFDVETVFLY
PWAVAFNQLGLLAFIEALIFIAILVVALVYAWRKGALEWT

Specific function: NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone

COG id: COG0838

COG function: function code C; NADH:ubiquinone oxidoreductase subunit 3 (chain A)

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the complex I subunit 3 family

Homologues:

Organism=Escherichia coli, GI1788625, Length=118, Percent_Identity=33.0508474576271, Blast_Score=78, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NU3C_GLOVI (Q7NML7)

Other databases:

- EMBL:   BA000045
- RefSeq:   NP_923694.1
- GeneID:   2599367
- GenomeReviews:   BA000045_GR
- NMPDR:   fig|251221.1.peg.748
- HOGENOM:   HBG605540
- OMA:   GERELTY
- ProtClustDB:   PRK06602
- BioCyc:   GVIO251221:GLR0748-MONOMER
- GO:   GO:0006810
- HAMAP:   MF_01394
- InterPro:   IPR023043
- InterPro:   IPR000440
- PANTHER:   PTHR11058

Pfam domain/function: PF00507 Oxidored_q4

EC number: 1.6.5.3

Molecular weight: Translated: 13583; Mature: 13583

Theoretical pI: Translated: 4.88; Mature: 4.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x12128f78)-; HASH(0x108eb4dc)-; HASH(0x103cee10)-;

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFVLSGYDALLIFLLLSALVPVLALTISYLIRPKGSGAFRTTTYESGVDPRGDSWIQFNI
CEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCEEEEHH
RYYMFALVFVVFDVETVFLYPWAVAFNQLGLLAFIEALIFIAILVVALVYAWRKGALEWT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
>Mature Secondary Structure
MFVLSGYDALLIFLLLSALVPVLALTISYLIRPKGSGAFRTTTYESGVDPRGDSWIQFNI
CEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCEEEEHH
RYYMFALVFVVFDVETVFLYPWAVAFNQLGLLAFIEALIFIAILVVALVYAWRKGALEWT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NADH; H+; ubiquinone

Specific reaction: NADH + H+ + ubiquinone = NAD+ + ubiquinol

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 14621292