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The map label for this gene is sodB [H]

Identifier: 37520251

GI number: 37520251

Start: 729628

End: 730578

Strand: Reverse

Name: sodB [H]

Synonym: gvip069

Alternate gene names: 37520251

Gene position: 730578-729628 (Counterclockwise)

Preceding gene: 37520252

Following gene: 37520250

Centisome position: 15.68

GC content: 58.78

Gene sequence:

>951_bases
ATGGTTTTGGGTGTTTTGCTTACAGGTAAGGCGCGATATTCTCCGTTACTAAAGGCTGCCTGCAATTTTCCAGCCGGGCG
TGCCCCTTGCGGTTCACCTGAGGCAAAAACCGGTTCACTCTGCCAGGAGTTCGTCTCGATGAAATGCTCCGTATCCACGC
TGGTCGGCACCCTTTGCCTTACCGCTGCCGCGTTGTTGTCCACAGCTGCCGAAGCCCAGATCAACATCCCGACACCGACG
ATTACCCCGCCCACCGTCACTGTACCGTCGGTGCAACCGCCTTCGGTCACGATGCCGTCCGCCACCCAGGCGTCGACAAC
GGCGTCGGGCTATCCCTACAAACTTGCTCCCCTCCCCTACGACTACAGCGCTCTTGAGCCTTATATCGACGCAGAAACCA
TGAAGCTTCACCACGACAAGCACCACCAGGCTTACGTGGACAATCTCAACAAAGCGCTCGAGAAGTATCCGGATCTCCAA
AAAAAATCGCCCGAACAACTCCTGCGCGATCTTAAGCAAGTACCCGAGGACACCCGTGCCGCCGTGCGCGGCAATGGCGG
CGGCCACGTCAACCACACGATGTTCTGGGAGATCATGAAGCCCAAAGGGGGCGGCGAGCCCGCCGGTCCGATCGCCGCCG
CCATCCGCACCAACTTCGGCAGCTTCGACGCCTTCAAAACCCAGTTCAATGAAGCGGGCACCAAGCGCTTCGGCAGCGGT
TGGGTGTGGCTTGTGAGCAATCCCGGCGGCAAGCTTGAGATCGTGAGCACCGCCAATCAGGATTCGCCCATTGCCGACGG
CAAGTACCCGATCATGGGCAACGACGTCTGGGAGCACGCTTACTATCTCAAGTACCAGAACCGCCGGGCCGATTATCTGA
GCGCCTGGTGGAACACGCTCAACTGGGATGAGATCAATCGTCGTTTCCAGAAAGCCTCCACCGGGTTGTAG

Upstream 100 bases:

>100_bases
GACTGCCCTGCCGAAAGCGAGCAACTCGGCCTCGAATGGTAGAGCGGTTCTCGAAGGACTAGACCAAAAGCCCGATCGAT
TCGCCGGGGGGAGGCGCAAG

Downstream 100 bases:

>100_bases
GGCGGTTTTGCCGCCTGGCGGGGCGTTCGGTTAGCCTGGAGCGTAATCTTTACCGCGCTGGGGATCTGACCATGAACGCC
CTGTTCGGATTGTGTGCTGT

Product: superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 316; Mature: 316

Protein sequence:

>316_residues
MVLGVLLTGKARYSPLLKAACNFPAGRAPCGSPEAKTGSLCQEFVSMKCSVSTLVGTLCLTAAALLSTAAEAQINIPTPT
ITPPTVTVPSVQPPSVTMPSATQASTTASGYPYKLAPLPYDYSALEPYIDAETMKLHHDKHHQAYVDNLNKALEKYPDLQ
KKSPEQLLRDLKQVPEDTRAAVRGNGGGHVNHTMFWEIMKPKGGGEPAGPIAAAIRTNFGSFDAFKTQFNEAGTKRFGSG
WVWLVSNPGGKLEIVSTANQDSPIADGKYPIMGNDVWEHAYYLKYQNRRADYLSAWWNTLNWDEINRRFQKASTGL

Sequences:

>Translated_316_residues
MVLGVLLTGKARYSPLLKAACNFPAGRAPCGSPEAKTGSLCQEFVSMKCSVSTLVGTLCLTAAALLSTAAEAQINIPTPT
ITPPTVTVPSVQPPSVTMPSATQASTTASGYPYKLAPLPYDYSALEPYIDAETMKLHHDKHHQAYVDNLNKALEKYPDLQ
KKSPEQLLRDLKQVPEDTRAAVRGNGGGHVNHTMFWEIMKPKGGGEPAGPIAAAIRTNFGSFDAFKTQFNEAGTKRFGSG
WVWLVSNPGGKLEIVSTANQDSPIADGKYPIMGNDVWEHAYYLKYQNRRADYLSAWWNTLNWDEINRRFQKASTGL
>Mature_316_residues
MVLGVLLTGKARYSPLLKAACNFPAGRAPCGSPEAKTGSLCQEFVSMKCSVSTLVGTLCLTAAALLSTAAEAQINIPTPT
ITPPTVTVPSVQPPSVTMPSATQASTTASGYPYKLAPLPYDYSALEPYIDAETMKLHHDKHHQAYVDNLNKALEKYPDLQ
KKSPEQLLRDLKQVPEDTRAAVRGNGGGHVNHTMFWEIMKPKGGGEPAGPIAAAIRTNFGSFDAFKTQFNEAGTKRFGSG
WVWLVSNPGGKLEIVSTANQDSPIADGKYPIMGNDVWEHAYYLKYQNRRADYLSAWWNTLNWDEINRRFQKASTGL

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=200, Percent_Identity=47.5, Blast_Score=187, Evalue=1e-47,
Organism=Homo sapiens, GI67782305, Length=200, Percent_Identity=47.5, Blast_Score=187, Evalue=1e-47,
Organism=Homo sapiens, GI67782309, Length=200, Percent_Identity=39, Blast_Score=135, Evalue=4e-32,
Organism=Escherichia coli, GI1790342, Length=204, Percent_Identity=52.4509803921569, Blast_Score=220, Evalue=1e-58,
Organism=Escherichia coli, GI1787946, Length=197, Percent_Identity=44.1624365482233, Blast_Score=176, Evalue=1e-45,
Organism=Caenorhabditis elegans, GI17506561, Length=202, Percent_Identity=44.0594059405941, Blast_Score=169, Evalue=2e-42,
Organism=Caenorhabditis elegans, GI17569479, Length=210, Percent_Identity=41.9047619047619, Blast_Score=158, Evalue=3e-39,
Organism=Saccharomyces cerevisiae, GI6321796, Length=214, Percent_Identity=42.0560747663551, Blast_Score=162, Evalue=8e-41,
Organism=Drosophila melanogaster, GI17136812, Length=213, Percent_Identity=43.1924882629108, Blast_Score=169, Evalue=2e-42,

Paralogues:

None

Copy number: 2980 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 34450; Mature: 34450

Theoretical pI: Translated: 8.65; Mature: 8.65

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVLGVLLTGKARYSPLLKAACNFPAGRAPCGSPEAKTGSLCQEFVSMKCSVSTLVGTLCL
CEEEEEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHH
TAAALLSTAAEAQINIPTPTITPPTVTVPSVQPPSVTMPSATQASTTASGYPYKLAPLPY
HHHHHHHHHHCCEEECCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCC
DYSALEPYIDAETMKLHHDKHHQAYVDNLNKALEKYPDLQKKSPEQLLRDLKQVPEDTRA
CHHHHCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHH
AVRGNGGGHVNHTMFWEIMKPKGGGEPAGPIAAAIRTNFGSFDAFKTQFNEAGTKRFGSG
HEECCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCC
WVWLVSNPGGKLEIVSTANQDSPIADGKYPIMGNDVWEHAYYLKYQNRRADYLSAWWNTL
EEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHEEEEEECCCCHHHHHHHHCCC
NWDEINRRFQKASTGL
CHHHHHHHHHHHHCCC
>Mature Secondary Structure
MVLGVLLTGKARYSPLLKAACNFPAGRAPCGSPEAKTGSLCQEFVSMKCSVSTLVGTLCL
CEEEEEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHH
TAAALLSTAAEAQINIPTPTITPPTVTVPSVQPPSVTMPSATQASTTASGYPYKLAPLPY
HHHHHHHHHHCCEEECCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCC
DYSALEPYIDAETMKLHHDKHHQAYVDNLNKALEKYPDLQKKSPEQLLRDLKQVPEDTRA
CHHHHCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHH
AVRGNGGGHVNHTMFWEIMKPKGGGEPAGPIAAAIRTNFGSFDAFKTQFNEAGTKRFGSG
HEECCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCC
WVWLVSNPGGKLEIVSTANQDSPIADGKYPIMGNDVWEHAYYLKYQNRRADYLSAWWNTL
EEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHEEEEEECCCCHHHHHHHHCCC
NWDEINRRFQKASTGL
CHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7860607 [H]