| Definition | Chromobacterium violaceum ATCC 12472 chromosome, complete genome. |
|---|---|
| Accession | NC_005085 |
| Length | 4,751,080 |
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The map label for this gene is yegH [H]
Identifier: 34499844
GI number: 34499844
Start: 4733395
End: 4734978
Strand: Direct
Name: yegH [H]
Synonym: CV_4389
Alternate gene names: 34499844
Gene position: 4733395-4734978 (Clockwise)
Preceding gene: 34499843
Following gene: 34499845
Centisome position: 99.63
GC content: 67.42
Gene sequence:
>1584_bases ATGGACCTTTCATGGCTGTCCGACCCCGCCGCCTGGCTGGGCCTCTTGACGCTGATCATCCTCGAGATCGTACTCGGCAT CGACAACCTGATCTTCGTGGCCATCCTGGCCGAAAAACTCCCGCCGGAACAACGCGACCGCGCCCGCATCGTCGGCCTGT CGCTGGCGCTGGTGATGCGCCTGATCCTGCTGGCCAGCATCTCCTGGCTGGTCACCCTGACCACGCCGTTGTTCTCGGTC TGGGGCCAGTCCTTCGCCGGCCGCGACCTGATCATGCTGTGCGGCGGCGTGTTCCTGCTGTTCAAGGCCACCACCGAGCT GCATGAGCGGCTGGAGGGCGTCGAACACGTGAAGGGCGGCGCGCAGCGCGCCTACGCGGCCTTCGCCACCGTGGTCGCCC AGATCCTGGTGCTGGACGCGGTGTTCTCGATCGACTCGGTGATCACCGCCATCGGCATGTCCGAACACCTGCCGGTGATG ATGCTGGCCGTCGTCATCGCCATGGTCCTGATGATCGCCGCCAGCAAGCCGCTGACCACCTTCGTCAACGCCCACCCCAC CGTGGTGATGCTGTGCCTGGGCTTCCTGCTGATGATAGGCTTCAGCCTGATCGCGGAAGGCTTCGGCTTCCACATCCCCA AGGGCTACCTGTACGCCGCCATCGGCTTCTCGGTGTTGATCGAAGCCTTCAACCAGGTATCGCAGGCCAACCGCATCCGC TACCTGAACCGCACCCAGAGCTTCCGCGAGCGCACCGCCAACACGGTGCTGAGCCTGATGGGCAGCCGCCTGACCGCCGC CAGCGCCGACGAAGCCAAGCCGGAAGCCGGCCCGCAGCCGGTGGAGGACACCGCCTTCGGCCAGAACGAGCGCGCGATGA TACACAGCGTGCTGACGCTGGCCGAGCGGCCGATCCGCGTGATCGCCACCCCGCGCGCCGACATCCACCGCCTGGACCTG AGCCAGCCGGAGGCGTCCCAGCGCAAGGCGCTGCGCGACAGCCCCTACTCCCGCCTGGTGGTGATACGCGACGGCAGCAT AGACGAGCCGCTGGGCATCGTCGCCCGCAAGGACCTGCTGGCCCAGCTGCTGGACGGCCGCCCGCTGGACATCGACGCCG CGCTGCGCCAGCCGCTGGTGCTGCCGGAAACCGTCACCGTGCTGAAGGCGCTGGAGAGCTTCCGCCAGCACGCCGCCGAC ATGGCCTTCGTGGTCAACGAGTTCGGCAGCCTGGAAGGCATCGTCACCCAGAAGGACCTGATGGAGGCGATCGCCGGCGA ATTCCCGGAAGAGCACGAGCGCCACGAGCTGCCGGCCATCGTGGTCCAGCCGGACGGCAGCTACGACGTGGAAGGCAGCC TGGAGCTCGTCACGCTGGAGCAGTACCTGACGCTGGGCGATTTCGAGGACGAGGACTTCCACACCGTGGCCGGCCTGCTG ATGGACTGCCTGGAGCGCATCCCGCGCGAGGGCGACGAAGTCACCGTCGGCGAATGGAAGCTGCGCGTCACCGCGCAGAA GGGCAACCGCACCGAGCGCGTGCTGATCAGCCCGCTGGCCGACGGCTTCGATGCCGCCATCTGA
Upstream 100 bases:
>100_bases GCCGGGCTTTTTGCATTTTCCCTGCCCGGCGCGCCGTCATTTGGTATCCTTGTAGCGTTTTTATCGCTTTTTTATCGCAC AAGGAACGCTTTACACCATC
Downstream 100 bases:
>100_bases GCCTGAGCATGGACCGGGGCCGTCCAGGCCCTGGTTTCTCTACGTGCTGCGCTGCGCCGACGGCGCGCTGTACACCGGCG TCAGCACCGACGTCGCGCGC
Product: transport membrane protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 527; Mature: 527
Protein sequence:
>527_residues MDLSWLSDPAAWLGLLTLIILEIVLGIDNLIFVAILAEKLPPEQRDRARIVGLSLALVMRLILLASISWLVTLTTPLFSV WGQSFAGRDLIMLCGGVFLLFKATTELHERLEGVEHVKGGAQRAYAAFATVVAQILVLDAVFSIDSVITAIGMSEHLPVM MLAVVIAMVLMIAASKPLTTFVNAHPTVVMLCLGFLLMIGFSLIAEGFGFHIPKGYLYAAIGFSVLIEAFNQVSQANRIR YLNRTQSFRERTANTVLSLMGSRLTAASADEAKPEAGPQPVEDTAFGQNERAMIHSVLTLAERPIRVIATPRADIHRLDL SQPEASQRKALRDSPYSRLVVIRDGSIDEPLGIVARKDLLAQLLDGRPLDIDAALRQPLVLPETVTVLKALESFRQHAAD MAFVVNEFGSLEGIVTQKDLMEAIAGEFPEEHERHELPAIVVQPDGSYDVEGSLELVTLEQYLTLGDFEDEDFHTVAGLL MDCLERIPREGDEVTVGEWKLRVTAQKGNRTERVLISPLADGFDAAI
Sequences:
>Translated_527_residues MDLSWLSDPAAWLGLLTLIILEIVLGIDNLIFVAILAEKLPPEQRDRARIVGLSLALVMRLILLASISWLVTLTTPLFSV WGQSFAGRDLIMLCGGVFLLFKATTELHERLEGVEHVKGGAQRAYAAFATVVAQILVLDAVFSIDSVITAIGMSEHLPVM MLAVVIAMVLMIAASKPLTTFVNAHPTVVMLCLGFLLMIGFSLIAEGFGFHIPKGYLYAAIGFSVLIEAFNQVSQANRIR YLNRTQSFRERTANTVLSLMGSRLTAASADEAKPEAGPQPVEDTAFGQNERAMIHSVLTLAERPIRVIATPRADIHRLDL SQPEASQRKALRDSPYSRLVVIRDGSIDEPLGIVARKDLLAQLLDGRPLDIDAALRQPLVLPETVTVLKALESFRQHAAD MAFVVNEFGSLEGIVTQKDLMEAIAGEFPEEHERHELPAIVVQPDGSYDVEGSLELVTLEQYLTLGDFEDEDFHTVAGLL MDCLERIPREGDEVTVGEWKLRVTAQKGNRTERVLISPLADGFDAAI >Mature_527_residues MDLSWLSDPAAWLGLLTLIILEIVLGIDNLIFVAILAEKLPPEQRDRARIVGLSLALVMRLILLASISWLVTLTTPLFSV WGQSFAGRDLIMLCGGVFLLFKATTELHERLEGVEHVKGGAQRAYAAFATVVAQILVLDAVFSIDSVITAIGMSEHLPVM MLAVVIAMVLMIAASKPLTTFVNAHPTVVMLCLGFLLMIGFSLIAEGFGFHIPKGYLYAAIGFSVLIEAFNQVSQANRIR YLNRTQSFRERTANTVLSLMGSRLTAASADEAKPEAGPQPVEDTAFGQNERAMIHSVLTLAERPIRVIATPRADIHRLDL SQPEASQRKALRDSPYSRLVVIRDGSIDEPLGIVARKDLLAQLLDGRPLDIDAALRQPLVLPETVTVLKALESFRQHAAD MAFVVNEFGSLEGIVTQKDLMEAIAGEFPEEHERHELPAIVVQPDGSYDVEGSLELVTLEQYLTLGDFEDEDFHTVAGLL MDCLERIPREGDEVTVGEWKLRVTAQKGNRTERVLISPLADGFDAAI
Specific function: Unknown
COG id: COG0861
COG function: function code P; Membrane protein TerC, possibly involved in tellurium resistance
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 CBS domains [H]
Homologues:
Organism=Homo sapiens, GI310128564, Length=197, Percent_Identity=24.3654822335025, Blast_Score=81, Evalue=3e-15, Organism=Escherichia coli, GI87082033, Length=525, Percent_Identity=53.5238095238095, Blast_Score=507, Evalue=1e-145, Organism=Escherichia coli, GI1788119, Length=515, Percent_Identity=52.4271844660194, Blast_Score=486, Evalue=1e-138, Organism=Escherichia coli, GI1789197, Length=233, Percent_Identity=50.6437768240343, Blast_Score=222, Evalue=4e-59, Organism=Escherichia coli, GI1790664, Length=233, Percent_Identity=27.0386266094421, Blast_Score=108, Evalue=1e-24, Organism=Escherichia coli, GI145693175, Length=239, Percent_Identity=25.5230125523013, Blast_Score=91, Evalue=2e-19, Organism=Escherichia coli, GI1786879, Length=233, Percent_Identity=28.3261802575107, Blast_Score=80, Evalue=4e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016169 - InterPro: IPR000644 - InterPro: IPR005496 - InterPro: IPR005170 [H]
Pfam domain/function: PF00571 CBS; PF03471 CorC_HlyC; PF03741 TerC [H]
EC number: NA
Molecular weight: Translated: 57791; Mature: 57791
Theoretical pI: Translated: 4.68; Mature: 4.68
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDLSWLSDPAAWLGLLTLIILEIVLGIDNLIFVAILAEKLPPEQRDRARIVGLSLALVMR CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH LILLASISWLVTLTTPLFSVWGQSFAGRDLIMLCGGVFLLFKATTELHERLEGVEHVKGG HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH AQRAYAAFATVVAQILVLDAVFSIDSVITAIGMSEHLPVMMLAVVIAMVLMIAASKPLTT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCHHH FVNAHPTVVMLCLGFLLMIGFSLIAEGFGFHIPKGYLYAAIGFSVLIEAFNQVSQANRIR HHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH YLNRTQSFRERTANTVLSLMGSRLTAASADEAKPEAGPQPVEDTAFGQNERAMIHSVLTL HHHHHHHHHHHHHHHHHHHHHCHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH AERPIRVIATPRADIHRLDLSQPEASQRKALRDSPYSRLVVIRDGSIDEPLGIVARKDLL HHCCEEEEECCCCHHHCCCCCCCCHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHH AQLLDGRPLDIDAALRQPLVLPETVTVLKALESFRQHAADMAFVVNEFGSLEGIVTQKDL HHHHCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH MEAIAGEFPEEHERHELPAIVVQPDGSYDVEGSLELVTLEQYLTLGDFEDEDFHTVAGLL HHHHHCCCCCHHHHCCCCEEEECCCCCCCCCCCEEEEEHHHHHHCCCCCCCHHHHHHHHH MDCLERIPREGDEVTVGEWKLRVTAQKGNRTERVLISPLADGFDAAI HHHHHHCCCCCCCEEECCEEEEEEECCCCCCCEEEEEHHCCCCCCCC >Mature Secondary Structure MDLSWLSDPAAWLGLLTLIILEIVLGIDNLIFVAILAEKLPPEQRDRARIVGLSLALVMR CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH LILLASISWLVTLTTPLFSVWGQSFAGRDLIMLCGGVFLLFKATTELHERLEGVEHVKGG HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH AQRAYAAFATVVAQILVLDAVFSIDSVITAIGMSEHLPVMMLAVVIAMVLMIAASKPLTT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCHHH FVNAHPTVVMLCLGFLLMIGFSLIAEGFGFHIPKGYLYAAIGFSVLIEAFNQVSQANRIR HHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH YLNRTQSFRERTANTVLSLMGSRLTAASADEAKPEAGPQPVEDTAFGQNERAMIHSVLTL HHHHHHHHHHHHHHHHHHHHHCHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH AERPIRVIATPRADIHRLDLSQPEASQRKALRDSPYSRLVVIRDGSIDEPLGIVARKDLL HHCCEEEEECCCCHHHCCCCCCCCHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHH AQLLDGRPLDIDAALRQPLVLPETVTVLKALESFRQHAADMAFVVNEFGSLEGIVTQKDL HHHHCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH MEAIAGEFPEEHERHELPAIVVQPDGSYDVEGSLELVTLEQYLTLGDFEDEDFHTVAGLL HHHHHCCCCCHHHHCCCCEEEECCCCCCCCCCCEEEEEHHHHHHCCCCCCCHHHHHHHHH MDCLERIPREGDEVTVGEWKLRVTAQKGNRTERVLISPLADGFDAAI HHHHHHCCCCCCCEEECCEEEEEEECCCCCCCEEEEEHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9097040; 9278503 [H]