| Definition | Chromobacterium violaceum ATCC 12472 chromosome, complete genome. |
|---|---|
| Accession | NC_005085 |
| Length | 4,751,080 |
Click here to switch to the map view.
The map label for this gene is 34498621
Identifier: 34498621
GI number: 34498621
Start: 3450064
End: 3451242
Strand: Direct
Name: 34498621
Synonym: CV_3166
Alternate gene names: NA
Gene position: 3450064-3451242 (Clockwise)
Preceding gene: 34498620
Following gene: 34498623
Centisome position: 72.62
GC content: 69.97
Gene sequence:
>1179_bases ATGTTCAAGAGACGAGAATTCCTGAAAGCGGCCGGCGCCGGCCTGATGATGTCGGTGCTGCCCAATCTGTCCTGGGCGCT GGCGCCAGCCGGTTACAAGCGCCTGTTGGTGCTGGTGGAATTGAAGGGCGGCAACGACGGCCTCAACACCGTGGTCCCCT ACGCCAGCGCCGACTACTACCGGCTGCGTCCCGGCATCGCCATCGCCCGCGAGCAGGTGCTGCAGATCAACGGCGACATC GGCCTGCACCCGTCGCTGGCGCCGCTGATGCCGTTGTGGCAGGACAAGCAGCTGGCGCTGCTGCAGGGCGTCGGCTACCC CGATCCCAATCTGTCGCACTTCCGCTCGATCGAGATCTGGGACACGGCGTCGGCCAGCCAGCAATACCTGAGCGAAGGCT GGCTGACCCGGCTGTTCCATGAGCAGCCGACGCCCAAGAACTTCGCCGCCGACGGCGTGGTGCTGTCCAGCCAGGTGCTG GGACCGCTGGACGGCGGCGCGCGCGCGGTGGTGCTGTCCAATCCGCAAGACTTCGCGCGCCAGGCCAAGCTGGTGGCGGA CCAGCAGCCCGGCCGCGCCGGCGCGGCGCTGGAGCATATCTTGAAAGTGGAAGGCGACATCCGCCAGGCCGCCGCCAGCC TGGCGCCGCTGCCGCGCACCGCGGCGAGCGAAGCGCCCACCGCCGGCCCCAAGCCCAACGGCGGCTTCGGCGTGGCGGTG CGCACGCTGACCGACACCCTGGCCCGCGGCGTGGACATCGCCGTCGCCCGCATCACGCTGACCGGCTTCGACACCCACGG CAACCAGCAGCCGGTGCAGGCGCGGCTGCTGGCGGAACTGGCGGACGGACTGGCGCAGCTGAAAAGCGAGATGACGCGGC TGGGCCGCTGGAACGACACGCTGGCGCTGACTTACGCCGAATTCGGCCGCCGCCCGCGCGAGAACGGCAACCGCGGCACC GACCACGGCACCGCCAACGTCCACTTCGCGCTGGGCGGCCGCGTCAACGGCGGCCTGTACGGCCAGATGCCGCAACTGGC CGGCGTCAGCGAGGGCAATCTGCCGCATGCGATAGACTTCCGCCAGGTTTACGCCACGGCGATAGACGGCTGGTGGGGCA AGGACAGCCATAACGTGCTGGGCGGACGCTTCGCGCCGCTGCCCCTGCTGCGCGGCTAG
Upstream 100 bases:
>100_bases GTGCCGCCGACCAACCCCTTGCCGCAGGGCGCCAGCGGCGCCAAGGCCATCGCCCAGTTGCTGCTGGACCCGGCCTATCA GGTGGAATGAGGAAACTTCC
Downstream 100 bases:
>100_bases GGATCGGGATACGCGATATTGAAGCGGCTGCGGTACAGCCGGTCCACCACGCCGTCGCGCTTCATGTCGCTGAGCGCGGC GGCAAAAGCGTGGCACAACT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 392; Mature: 392
Protein sequence:
>392_residues MFKRREFLKAAGAGLMMSVLPNLSWALAPAGYKRLLVLVELKGGNDGLNTVVPYASADYYRLRPGIAIAREQVLQINGDI GLHPSLAPLMPLWQDKQLALLQGVGYPDPNLSHFRSIEIWDTASASQQYLSEGWLTRLFHEQPTPKNFAADGVVLSSQVL GPLDGGARAVVLSNPQDFARQAKLVADQQPGRAGAALEHILKVEGDIRQAAASLAPLPRTAASEAPTAGPKPNGGFGVAV RTLTDTLARGVDIAVARITLTGFDTHGNQQPVQARLLAELADGLAQLKSEMTRLGRWNDTLALTYAEFGRRPRENGNRGT DHGTANVHFALGGRVNGGLYGQMPQLAGVSEGNLPHAIDFRQVYATAIDGWWGKDSHNVLGGRFAPLPLLRG
Sequences:
>Translated_392_residues MFKRREFLKAAGAGLMMSVLPNLSWALAPAGYKRLLVLVELKGGNDGLNTVVPYASADYYRLRPGIAIAREQVLQINGDI GLHPSLAPLMPLWQDKQLALLQGVGYPDPNLSHFRSIEIWDTASASQQYLSEGWLTRLFHEQPTPKNFAADGVVLSSQVL GPLDGGARAVVLSNPQDFARQAKLVADQQPGRAGAALEHILKVEGDIRQAAASLAPLPRTAASEAPTAGPKPNGGFGVAV RTLTDTLARGVDIAVARITLTGFDTHGNQQPVQARLLAELADGLAQLKSEMTRLGRWNDTLALTYAEFGRRPRENGNRGT DHGTANVHFALGGRVNGGLYGQMPQLAGVSEGNLPHAIDFRQVYATAIDGWWGKDSHNVLGGRFAPLPLLRG >Mature_392_residues MFKRREFLKAAGAGLMMSVLPNLSWALAPAGYKRLLVLVELKGGNDGLNTVVPYASADYYRLRPGIAIAREQVLQINGDI GLHPSLAPLMPLWQDKQLALLQGVGYPDPNLSHFRSIEIWDTASASQQYLSEGWLTRLFHEQPTPKNFAADGVVLSSQVL GPLDGGARAVVLSNPQDFARQAKLVADQQPGRAGAALEHILKVEGDIRQAAASLAPLPRTAASEAPTAGPKPNGGFGVAV RTLTDTLARGVDIAVARITLTGFDTHGNQQPVQARLLAELADGLAQLKSEMTRLGRWNDTLALTYAEFGRRPRENGNRGT DHGTANVHFALGGRVNGGLYGQMPQLAGVSEGNLPHAIDFRQVYATAIDGWWGKDSHNVLGGRFAPLPLLRG
Specific function: Unknown
COG id: COG4102
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42060; Mature: 42060
Theoretical pI: Translated: 9.64; Mature: 9.64
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFKRREFLKAAGAGLMMSVLPNLSWALAPAGYKRLLVLVELKGGNDGLNTVVPYASADYY CCCHHHHHHHHCCHHHHHHHCCCCEEECCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCE RLRPGIAIAREQVLQINGDIGLHPSLAPLMPLWQDKQLALLQGVGYPDPNLSHFRSIEIW EECCCHHHHHHHHEEECCCCCCCCCHHHHCCCCCCCHHHHHHCCCCCCCCHHHEEEEEEE DTASASQQYLSEGWLTRLFHEQPTPKNFAADGVVLSSQVLGPLDGGARAVVLSNPQDFAR CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEHHHHCCCCCCCCEEEEECCCHHHHH QAKLVADQQPGRAGAALEHILKVEGDIRQAAASLAPLPRTAASEAPTAGPKPNGGFGVAV HHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEH RTLTDTLARGVDIAVARITLTGFDTHGNQQPVQARLLAELADGLAQLKSEMTRLGRWNDT HHHHHHHHCCCEEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE LALTYAEFGRRPRENGNRGTDHGTANVHFALGGRVNGGLYGQMPQLAGVSEGNLPHAIDF EEEEEHHHCCCCCCCCCCCCCCCCCEEEEEECCEECCCCCCCCHHHCCCCCCCCCCHHHH RQVYATAIDGWWGKDSHNVLGGRFAPLPLLRG HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MFKRREFLKAAGAGLMMSVLPNLSWALAPAGYKRLLVLVELKGGNDGLNTVVPYASADYY CCCHHHHHHHHCCHHHHHHHCCCCEEECCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCE RLRPGIAIAREQVLQINGDIGLHPSLAPLMPLWQDKQLALLQGVGYPDPNLSHFRSIEIW EECCCHHHHHHHHEEECCCCCCCCCHHHHCCCCCCCHHHHHHCCCCCCCCHHHEEEEEEE DTASASQQYLSEGWLTRLFHEQPTPKNFAADGVVLSSQVLGPLDGGARAVVLSNPQDFAR CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEHHHHCCCCCCCCEEEEECCCHHHHH QAKLVADQQPGRAGAALEHILKVEGDIRQAAASLAPLPRTAASEAPTAGPKPNGGFGVAV HHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEH RTLTDTLARGVDIAVARITLTGFDTHGNQQPVQARLLAELADGLAQLKSEMTRLGRWNDT HHHHHHHHCCCEEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE LALTYAEFGRRPRENGNRGTDHGTANVHFALGGRVNGGLYGQMPQLAGVSEGNLPHAIDF EEEEEHHHCCCCCCCCCCCCCCCCCEEEEEECCEECCCCCCCCHHHCCCCCCCCCCHHHH RQVYATAIDGWWGKDSHNVLGGRFAPLPLLRG HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA