| Definition | Chromobacterium violaceum ATCC 12472 chromosome, complete genome. |
|---|---|
| Accession | NC_005085 |
| Length | 4,751,080 |
Click here to switch to the map view.
The map label for this gene is 34498620
Identifier: 34498620
GI number: 34498620
Start: 3448500
End: 3450053
Strand: Direct
Name: 34498620
Synonym: CV_3165
Alternate gene names: NA
Gene position: 3448500-3450053 (Clockwise)
Preceding gene: 34498615
Following gene: 34498621
Centisome position: 72.58
GC content: 67.7
Gene sequence:
>1554_bases ATGCGCAAACAACTTAACACTCTGACCAGTCCGCTTAATACCGCAGCGAAGAGTGGCCACTATGCTCACAGTCAATCGCT TATGCAAACGGCTTGCCGCGGTGAACCCATGATCAAAAGAATACTGCTCGCCTCCGCCCTGCTCGGCCTGCCGCTATGCG CGCTGGCCGGCATCGGCGCGGACGGCGCCCGCCACCTGCTGGCGCGCGCCGGCTTCGGCGCCAACCCGGCGCAGATCGAG GCTTTCGCGCCGCTGAGCCGCGAGGCGGCGGTGGACAAGATACTGGCCGGTGTCCGCACCCAGGCGGCGACGCCGCCGCC TGGGTGGGCCAACGAGCCGTTCGAACGGCCCGGCCAGCCCGGCCTCACCGAGGAACAGAAAAAGGCGCTGCAACAGGAAC GCAATCAGCACGCGGTCGAGCTGCGCAGCTGGTGGCTGGCCGAGATGCGCAACACGCCGTCGCCGCTGACGGAGAAGATG ACGCTGTTCTGGCACAACCATTTCGTGTCGGCGTTGGACAAGGTGCGCTCGCCGCAGATGATGTACCAGCAAAACCTGCT GCTGCGCCACTACGCGCTGGGCGACTTCGGCCAGCTGCTGCACGCGGTGGCGCGCGATCCGGCGATGATGCGCTACCTCG ACACCGCCAACAACCGCAAGGACCAGCCCAACGAGAACTTCGCCCGCGAGGTGATGGAGCTGTTCACGCTGGGCGAAGGC CGCTACAGCGAACAGGACATCCGCGAGGCCGCCCGAGCCTTCACCGGCTGGGGCCTGGACCGCGACGACCAGTTCATCGT CCGTCCGCGGCTGCGCGACACCGGCGAGAAAGTCATCTTCGGCCAGCGCGGCAATTTCGACGGCGACGACGTGATCGACC TGCTGCTGCAGCAGCCTAGCACCGCGGTGTTCGTCACCAGCAAGCTGTGGCGCAACTTCGTGTCGCCGACGCCCGATCCG GCCACGATCAACAAGCTGGCCGCCGACTTCCGCCGCGGCCATTACCAGTTGAAGCCCTTGATGCGCGCGCTGCTGCTGAC GCCGCAGTTCTGGCGCAGCCAGGGCCAACTGGTGAAATCGCCGCTGGAGCTGACCGTAGGCACGCTGGTGACTTTCGACC TCAATCCGCCGGACTGGCGCGTGATCGCCGGCCTGAACCGCCAGCTGGGTCAAGACGTGTTCGCGCCGCCCAACGTCAAG GGCTGGCCCGGCGGCGAGGCCTGGATCAACAGCGCCACCCTGCTCACCCGCAAGCAGTTTCTGGACCGCATCGCCCGCGA CGCCGCGCCGGCGCGCGACGCCTACGTCCAGGCCGATGGCGGCCTGAACGAGATGGCCGGCCGCGAGGCGCGCATCCGCC GCTTCGTCGGCAACGGGCTGAATTCGATGAAGCTGCAACCCGATGAATGGGCCGCCGTCTACGGCGTCCGCACCGCCGCC GACGCCGCGCGGCTGCTGCTGGCCGTGCCGCCGACCAACCCCTTGCCGCAGGGCGCCAGCGGCGCCAAGGCCATCGCCCA GTTGCTGCTGGACCCGGCCTATCAGGTGGAATGA
Upstream 100 bases:
>100_bases ATCACGCTCCCTCCGCTGGCATGATCCAGATCAGGTTCTCAGGGTGTCTCTCAGCCCGCATGGCGGGCACCCCCGGTGAC AGGGCGACAGTATAGCCCAG
Downstream 100 bases:
>100_bases GGAAACTTCCATGTTCAAGAGACGAGAATTCCTGAAAGCGGCCGGCGCCGGCCTGATGATGTCGGTGCTGCCCAATCTGT CCTGGGCGCTGGCGCCAGCC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 517; Mature: 517
Protein sequence:
>517_residues MRKQLNTLTSPLNTAAKSGHYAHSQSLMQTACRGEPMIKRILLASALLGLPLCALAGIGADGARHLLARAGFGANPAQIE AFAPLSREAAVDKILAGVRTQAATPPPGWANEPFERPGQPGLTEEQKKALQQERNQHAVELRSWWLAEMRNTPSPLTEKM TLFWHNHFVSALDKVRSPQMMYQQNLLLRHYALGDFGQLLHAVARDPAMMRYLDTANNRKDQPNENFAREVMELFTLGEG RYSEQDIREAARAFTGWGLDRDDQFIVRPRLRDTGEKVIFGQRGNFDGDDVIDLLLQQPSTAVFVTSKLWRNFVSPTPDP ATINKLAADFRRGHYQLKPLMRALLLTPQFWRSQGQLVKSPLELTVGTLVTFDLNPPDWRVIAGLNRQLGQDVFAPPNVK GWPGGEAWINSATLLTRKQFLDRIARDAAPARDAYVQADGGLNEMAGREARIRRFVGNGLNSMKLQPDEWAAVYGVRTAA DAARLLLAVPPTNPLPQGASGAKAIAQLLLDPAYQVE
Sequences:
>Translated_517_residues MRKQLNTLTSPLNTAAKSGHYAHSQSLMQTACRGEPMIKRILLASALLGLPLCALAGIGADGARHLLARAGFGANPAQIE AFAPLSREAAVDKILAGVRTQAATPPPGWANEPFERPGQPGLTEEQKKALQQERNQHAVELRSWWLAEMRNTPSPLTEKM TLFWHNHFVSALDKVRSPQMMYQQNLLLRHYALGDFGQLLHAVARDPAMMRYLDTANNRKDQPNENFAREVMELFTLGEG RYSEQDIREAARAFTGWGLDRDDQFIVRPRLRDTGEKVIFGQRGNFDGDDVIDLLLQQPSTAVFVTSKLWRNFVSPTPDP ATINKLAADFRRGHYQLKPLMRALLLTPQFWRSQGQLVKSPLELTVGTLVTFDLNPPDWRVIAGLNRQLGQDVFAPPNVK GWPGGEAWINSATLLTRKQFLDRIARDAAPARDAYVQADGGLNEMAGREARIRRFVGNGLNSMKLQPDEWAAVYGVRTAA DAARLLLAVPPTNPLPQGASGAKAIAQLLLDPAYQVE >Mature_517_residues MRKQLNTLTSPLNTAAKSGHYAHSQSLMQTACRGEPMIKRILLASALLGLPLCALAGIGADGARHLLARAGFGANPAQIE AFAPLSREAAVDKILAGVRTQAATPPPGWANEPFERPGQPGLTEEQKKALQQERNQHAVELRSWWLAEMRNTPSPLTEKM TLFWHNHFVSALDKVRSPQMMYQQNLLLRHYALGDFGQLLHAVARDPAMMRYLDTANNRKDQPNENFAREVMELFTLGEG RYSEQDIREAARAFTGWGLDRDDQFIVRPRLRDTGEKVIFGQRGNFDGDDVIDLLLQQPSTAVFVTSKLWRNFVSPTPDP ATINKLAADFRRGHYQLKPLMRALLLTPQFWRSQGQLVKSPLELTVGTLVTFDLNPPDWRVIAGLNRQLGQDVFAPPNVK GWPGGEAWINSATLLTRKQFLDRIARDAAPARDAYVQADGGLNEMAGREARIRRFVGNGLNSMKLQPDEWAAVYGVRTAA DAARLLLAVPPTNPLPQGASGAKAIAQLLLDPAYQVE
Specific function: Unknown
COG id: COG5267
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 57339; Mature: 57339
Theoretical pI: Translated: 9.85; Mature: 9.85
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRKQLNTLTSPLNTAAKSGHYAHSQSLMQTACRGEPMIKRILLASALLGLPLCALAGIGA CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCC DGARHLLARAGFGANPAQIEAFAPLSREAAVDKILAGVRTQAATPPPGWANEPFERPGQP HHHHHHHHHCCCCCCHHHEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC GLTEEQKKALQQERNQHAVELRSWWLAEMRNTPSPLTEKMTLFWHNHFVSALDKVRSPQM CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHH MYQQNLLLRHYALGDFGQLLHAVARDPAMMRYLDTANNRKDQPNENFAREVMELFTLGEG HHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCC RYSEQDIREAARAFTGWGLDRDDQFIVRPRLRDTGEKVIFGQRGNFDGDDVIDLLLQQPS CCCHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCEEEECCCCCCCHHHHHHHHHHCCC TAVFVTSKLWRNFVSPTPDPATINKLAADFRRGHYQLKPLMRALLLTPQFWRSQGQLVKS CEEEEHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHCCCHHHHH PLELTVGTLVTFDLNPPDWRVIAGLNRQLGQDVFAPPNVKGWPGGEAWINSATLLTRKQF HHHEEEEEEEEEECCCCCCEEEECHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH LDRIARDAAPARDAYVQADGGLNEMAGREARIRRFVGNGLNSMKLQPDEWAAVYGVRTAA HHHHHHHCCCCCCCEEECCCCHHHHHCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH DAARLLLAVPPTNPLPQGASGAKAIAQLLLDPAYQVE HHHHEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCCC >Mature Secondary Structure MRKQLNTLTSPLNTAAKSGHYAHSQSLMQTACRGEPMIKRILLASALLGLPLCALAGIGA CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCC DGARHLLARAGFGANPAQIEAFAPLSREAAVDKILAGVRTQAATPPPGWANEPFERPGQP HHHHHHHHHCCCCCCHHHEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC GLTEEQKKALQQERNQHAVELRSWWLAEMRNTPSPLTEKMTLFWHNHFVSALDKVRSPQM CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHH MYQQNLLLRHYALGDFGQLLHAVARDPAMMRYLDTANNRKDQPNENFAREVMELFTLGEG HHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCC RYSEQDIREAARAFTGWGLDRDDQFIVRPRLRDTGEKVIFGQRGNFDGDDVIDLLLQQPS CCCHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCEEEECCCCCCCHHHHHHHHHHCCC TAVFVTSKLWRNFVSPTPDPATINKLAADFRRGHYQLKPLMRALLLTPQFWRSQGQLVKS CEEEEHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHCCCHHHHH PLELTVGTLVTFDLNPPDWRVIAGLNRQLGQDVFAPPNVKGWPGGEAWINSATLLTRKQF HHHEEEEEEEEEECCCCCCEEEECHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH LDRIARDAAPARDAYVQADGGLNEMAGREARIRRFVGNGLNSMKLQPDEWAAVYGVRTAA HHHHHHHCCCCCCCEEECCCCHHHHHCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH DAARLLLAVPPTNPLPQGASGAKAIAQLLLDPAYQVE HHHHEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA