| Definition | Chromobacterium violaceum ATCC 12472 chromosome, complete genome. |
|---|---|
| Accession | NC_005085 |
| Length | 4,751,080 |
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The map label for this gene is dipZ [H]
Identifier: 34497808
GI number: 34497808
Start: 2539612
End: 2541402
Strand: Reverse
Name: dipZ [H]
Synonym: CV_2353
Alternate gene names: 34497808
Gene position: 2541402-2539612 (Counterclockwise)
Preceding gene: 34497818
Following gene: 34497807
Centisome position: 53.49
GC content: 68.96
Gene sequence:
>1791_bases GTGCAAGCATACCTCCATTCGTTTTACCGATCGGCCTGGCTATGGCTGGCGTCCGTGATCGCCTGTCTCGGCCTGGCCCT GCCCGCGCACGCGGTCAACCAGGACGACCTGCTCCCGCCGGAGCAGGCTTTCGCCGCCCAGGTCAGCCGCAGCGGCGACC AGCTCCAGCTGACGCTGGAGGTCGCGCCCGGATACTACCTGTACCGCGACCGCATCAGCATCAGCACCACGCCCGCCGAC CTGGCCGGCAAGCCGACGCTGCCCGCCGCCCAGGAAAAAAATGACCCTTACTTCGGCAAGCAGCAGATTTACCATGGCAA GCAGCTGATCACCATCCCGCTGGCCGCCGGCGCGCCGGCCGACTTCCAGCTGAACGTGAAGCTGCAAGGCTGCGCCGAAG CCGGCGTCTGCTACCCGCCTTACACCCACAAGCTGAAGGTGGGACAGGCCGGCGCCGCGGGCAACAAGCTCAGCGCCTGG ACGGAGGTCGACTCGTCGGGAAAAGCTTCGGCCGGTAACAGCGAGTTGGCCGCCAGGGGTTGGCTGGCCACACTGGGCAC CTTCCTGCTGGCGGGTCTGGGCATGGCGTTCACCGCCTGCATGTACCCGCTGCTGCCCATCGTTTCATCGCTGATTGCCG GCCAAGGCGCAACCCTCAGCCGCGGCCGCGGTTTCCTGCTGTCCCTGCTTTACGTGCAAGGCCTGGCGCTCACCTACACC GCCGTCGGCGTCGTCGCCGGGCTGACCGGCTCGCTGCTGACCGTATGGCTGCAGCAGCCGGCGGTGGTGCTGTCCGCCAG CGCGCTGATGGTGGTGTTCGCGCTATCCATGTTCGACCTGTTCTCCATCCAGTTGCCCAGCGCCCTGCAGTCCCGCCTGG CCGACACCTCCAACCGGCTCACCGGCGGCAAGGCCGCCACCGTGTTTCTGATGGGCGCGCTGTCGGCGCTGATCATCGGC CCCTGCGTGGCCCCGCCGCTGGCCTTGGCGCTGGGCTATATCGGCAGCACCGGCGACGCCGTGCTGGGCGGCGCGGCGCT GTATGCGATGGCCATGGGCCTGGGCCTGCCGCTGATCGCCATCGGCACCTTCGGCGGCCACGTGCTGCCGCGCGCCGGCC ACTGGATGAAGGCGGTGAAGTCCGCGTTCGGCGTGGTGATGCTGGGCCTCGCCATCTGGCTGGCCACGCCTTTCCTGCCG CCGCCGCTGGTGATGCTGCTGTGGGCGGCGCTGCTGATCGGCTCGGCGGTGTTTCTCGGCGCCTTCGACAGCCTGTCGTC CGCCACCAAGGCCAGCGCGCGCCTGGGCAAGGCGCTGGGCCTGCTGCTGTTCCTGCTGGGCGGCGCCCAGCTGGTCGGCC TCTTGTCCGGCGCCGACAACCCGCGCTATCCGCTGAAGCTGCTCGCCGCCAGCAGCGCCGAGGGCGCCGTTCAGCAGCAT TTCCAGCCGATCCGTTCGAGCGCGGAACTGGACGCCAAGCTGGCCGAGGCCAAGGCCGCCGGCAAGCCGCTGCTGCTGGA CTTCTACGCCGACTGGTGCGTGGCCTGCAAGGAAATGGAGGCCGACGTCTTCCCGCAGCAACAGGCGGCGGCGCAGATGC AGCGCTTCGTGTTGCTGCGCGCCGACGTCACCGCCAACACGCCCGAGCACCAGGCGCTGCTCAAGCGCTTCGGCTTGTTC GGCCCGCCGGGCATCATCCTGTTCGACAGCCAATCCCGCGAAAGCAACCGCGTGGTCGGCTACACCCCCGCCGACGCATT TGCCCGCGAGCTGGCCAAGGTGGCAAACTAG
Upstream 100 bases:
>100_bases ATGCAATTTGATGCATATTGCATCACGCATCGTAAAAACGGAACCGCAAACCGTTTACATCGTCACAGTTTCATCGCCAA CCGCAAAGAAGAGTCTGCAC
Downstream 100 bases:
>100_bases CGCCGTATCCGGCCGGCGCCATCGCGCCGGCCGCCATTTCCGCCACCTAGATCGGACGCCTCCATGCCGCCCCTCCCCAA CGCTTTTCCCAATGTCAGCA
Product: thiol:disulfide interchange protein
Products: NA
Alternate protein names: Protein-disulfide reductase; Disulfide reductase [H]
Number of amino acids: Translated: 596; Mature: 596
Protein sequence:
>596_residues MQAYLHSFYRSAWLWLASVIACLGLALPAHAVNQDDLLPPEQAFAAQVSRSGDQLQLTLEVAPGYYLYRDRISISTTPAD LAGKPTLPAAQEKNDPYFGKQQIYHGKQLITIPLAAGAPADFQLNVKLQGCAEAGVCYPPYTHKLKVGQAGAAGNKLSAW TEVDSSGKASAGNSELAARGWLATLGTFLLAGLGMAFTACMYPLLPIVSSLIAGQGATLSRGRGFLLSLLYVQGLALTYT AVGVVAGLTGSLLTVWLQQPAVVLSASALMVVFALSMFDLFSIQLPSALQSRLADTSNRLTGGKAATVFLMGALSALIIG PCVAPPLALALGYIGSTGDAVLGGAALYAMAMGLGLPLIAIGTFGGHVLPRAGHWMKAVKSAFGVVMLGLAIWLATPFLP PPLVMLLWAALLIGSAVFLGAFDSLSSATKASARLGKALGLLLFLLGGAQLVGLLSGADNPRYPLKLLAASSAEGAVQQH FQPIRSSAELDAKLAEAKAAGKPLLLDFYADWCVACKEMEADVFPQQQAAAQMQRFVLLRADVTANTPEHQALLKRFGLF GPPGIILFDSQSRESNRVVGYTPADAFARELAKVAN
Sequences:
>Translated_596_residues MQAYLHSFYRSAWLWLASVIACLGLALPAHAVNQDDLLPPEQAFAAQVSRSGDQLQLTLEVAPGYYLYRDRISISTTPAD LAGKPTLPAAQEKNDPYFGKQQIYHGKQLITIPLAAGAPADFQLNVKLQGCAEAGVCYPPYTHKLKVGQAGAAGNKLSAW TEVDSSGKASAGNSELAARGWLATLGTFLLAGLGMAFTACMYPLLPIVSSLIAGQGATLSRGRGFLLSLLYVQGLALTYT AVGVVAGLTGSLLTVWLQQPAVVLSASALMVVFALSMFDLFSIQLPSALQSRLADTSNRLTGGKAATVFLMGALSALIIG PCVAPPLALALGYIGSTGDAVLGGAALYAMAMGLGLPLIAIGTFGGHVLPRAGHWMKAVKSAFGVVMLGLAIWLATPFLP PPLVMLLWAALLIGSAVFLGAFDSLSSATKASARLGKALGLLLFLLGGAQLVGLLSGADNPRYPLKLLAASSAEGAVQQH FQPIRSSAELDAKLAEAKAAGKPLLLDFYADWCVACKEMEADVFPQQQAAAQMQRFVLLRADVTANTPEHQALLKRFGLF GPPGIILFDSQSRESNRVVGYTPADAFARELAKVAN >Mature_596_residues MQAYLHSFYRSAWLWLASVIACLGLALPAHAVNQDDLLPPEQAFAAQVSRSGDQLQLTLEVAPGYYLYRDRISISTTPAD LAGKPTLPAAQEKNDPYFGKQQIYHGKQLITIPLAAGAPADFQLNVKLQGCAEAGVCYPPYTHKLKVGQAGAAGNKLSAW TEVDSSGKASAGNSELAARGWLATLGTFLLAGLGMAFTACMYPLLPIVSSLIAGQGATLSRGRGFLLSLLYVQGLALTYT AVGVVAGLTGSLLTVWLQQPAVVLSASALMVVFALSMFDLFSIQLPSALQSRLADTSNRLTGGKAATVFLMGALSALIIG PCVAPPLALALGYIGSTGDAVLGGAALYAMAMGLGLPLIAIGTFGGHVLPRAGHWMKAVKSAFGVVMLGLAIWLATPFLP PPLVMLLWAALLIGSAVFLGAFDSLSSATKASARLGKALGLLLFLLGGAQLVGLLSGADNPRYPLKLLAASSAEGAVQQH FQPIRSSAELDAKLAEAKAAGKPLLLDFYADWCVACKEMEADVFPQQQAAAQMQRFVLLRADVTANTPEHQALLKRFGLF GPPGIILFDSQSRESNRVVGYTPADAFARELAKVAN
Specific function: Required to facilitate the formation of correct disulfide bonds in some periplasmic proteins and for the assembly of the periplasmic c-type cytochromes. Acts by transferring electrons from cytoplasmic thioredoxin to the periplasm. This transfer involves a
COG id: COG4232
COG function: function code OC; Thiol:disulfide interchange protein
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 thioredoxin domain [H]
Homologues:
Organism=Escherichia coli, GI1790578, Length=561, Percent_Identity=37.9679144385027, Blast_Score=340, Evalue=2e-94,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003834 - InterPro: IPR022910 - InterPro: IPR005746 - InterPro: IPR017936 - InterPro: IPR012336 - InterPro: IPR013766 - InterPro: IPR012335 [H]
Pfam domain/function: PF02683 DsbD; PF00085 Thioredoxin [H]
EC number: =1.8.1.8 [H]
Molecular weight: Translated: 62396; Mature: 62396
Theoretical pI: Translated: 8.76; Mature: 8.76
Prosite motif: PS00194 THIOREDOXIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQAYLHSFYRSAWLWLASVIACLGLALPAHAVNQDDLLPPEQAFAAQVSRSGDQLQLTLE CHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCCCCHHHHHHHHHCCCCEEEEEEE VAPGYYLYRDRISISTTPADLAGKPTLPAAQEKNDPYFGKQQIYHGKQLITIPLAAGAPA ECCCEEEEECCEEEECCCHHCCCCCCCCCCCCCCCCCCCHHHHHCCCEEEEEEECCCCCC DFQLNVKLQGCAEAGVCYPPYTHKLKVGQAGAAGNKLSAWTEVDSSGKASAGNSELAARG CEEEEEEEECCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCHHHHHH WLATLGTFLLAGLGMAFTACMYPLLPIVSSLIAGQGATLSRGRGFLLSLLYVQGLALTYT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH AVGVVAGLTGSLLTVWLQQPAVVLSASALMVVFALSMFDLFSIQLPSALQSRLADTSNRL HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCC TGGKAATVFLMGALSALIIGPCVAPPLALALGYIGSTGDAVLGGAALYAMAMGLGLPLIA CCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHEE IGTFGGHVLPRAGHWMKAVKSAFGVVMLGLAIWLATPFLPPPLVMLLWAALLIGSAVFLG EECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH AFDSLSSATKASARLGKALGLLLFLLGGAQLVGLLSGADNPRYPLKLLAASSAEGAVQQH HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHH FQPIRSSAELDAKLAEAKAAGKPLLLDFYADWCVACKEMEADVFPQQQAAAQMQRFVLLR HHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHEE ADVTANTPEHQALLKRFGLFGPPGIILFDSQSRESNRVVGYTPADAFARELAKVAN ECCCCCCCHHHHHHHHCCCCCCCCEEEECCCCCCCCCEEEECCHHHHHHHHHHHCC >Mature Secondary Structure MQAYLHSFYRSAWLWLASVIACLGLALPAHAVNQDDLLPPEQAFAAQVSRSGDQLQLTLE CHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCCCCHHHHHHHHHCCCCEEEEEEE VAPGYYLYRDRISISTTPADLAGKPTLPAAQEKNDPYFGKQQIYHGKQLITIPLAAGAPA ECCCEEEEECCEEEECCCHHCCCCCCCCCCCCCCCCCCCHHHHHCCCEEEEEEECCCCCC DFQLNVKLQGCAEAGVCYPPYTHKLKVGQAGAAGNKLSAWTEVDSSGKASAGNSELAARG CEEEEEEEECCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCHHHHHH WLATLGTFLLAGLGMAFTACMYPLLPIVSSLIAGQGATLSRGRGFLLSLLYVQGLALTYT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH AVGVVAGLTGSLLTVWLQQPAVVLSASALMVVFALSMFDLFSIQLPSALQSRLADTSNRL HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCC TGGKAATVFLMGALSALIIGPCVAPPLALALGYIGSTGDAVLGGAALYAMAMGLGLPLIA CCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHEE IGTFGGHVLPRAGHWMKAVKSAFGVVMLGLAIWLATPFLPPPLVMLLWAALLIGSAVFLG EECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH AFDSLSSATKASARLGKALGLLLFLLGGAQLVGLLSGADNPRYPLKLLAASSAEGAVQQH HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHH FQPIRSSAELDAKLAEAKAAGKPLLLDFYADWCVACKEMEADVFPQQQAAAQMQRFVLLR HHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHEE ADVTANTPEHQALLKRFGLFGPPGIILFDSQSRESNRVVGYTPADAFARELAKVAN ECCCCCCCHHHHHHHHCCCCCCCCEEEECCCCCCCCCEEEECCHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 10761919 [H]