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The map label for this gene is ydeP [H]

Identifier: 34497631

GI number: 34497631

Start: 2349022

End: 2349345

Strand: Reverse

Name: ydeP [H]

Synonym: CV_2176

Alternate gene names: 34497631

Gene position: 2349345-2349022 (Counterclockwise)

Preceding gene: 34497634

Following gene: 34497630

Centisome position: 49.45

GC content: 68.52

Gene sequence:

>324_bases
ATGGCCGCAAGCCACTGCCCTATGCTGCGGTTCGTCGATCTGATCGCAGGCAAATGGGCGATCCCCATCCTCTACCGCCT
GATCGTGCTGGACCGCCCGGTGCGCTTCGGCGAGCTGCAGCGCGCGGTCGGCGTCATCACCCAGAAGGAGTTGACCCGCC
AGCTGCGCGCCTTCGAGCAGCGCGGCCTGGTGCAGCGCACGGTGTACGCCGAAGTGCCGCCCCGCGTCGAGTACCGGATC
ACCGCGCTGGGCAGCACGCTGCAGCAGCCGCTGCAGCAGCTGGCGGGATGGATGGAGCGCTATGGCGGCCAATTGCGCGG
CTAA

Upstream 100 bases:

>100_bases
TATCGAAGCGGCTACTTTATGGCCAGTGGTATGTAATGTATAGTAGGTACCAAATTGATACTAATGAACGATCATGACTG
TGGAAAACCAGCAGGAAACC

Downstream 100 bases:

>100_bases
GCATGCCGTCAATCGTCCTCCCGCTCGGACAGCAGCGCCAGGTGCTGGCGATGAGGCCGTCGCGGTTTTGCCAGAGCCTC
GCCATGCGTCACGCCGACCA

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 107; Mature: 106

Protein sequence:

>107_residues
MAASHCPMLRFVDLIAGKWAIPILYRLIVLDRPVRFGELQRAVGVITQKELTRQLRAFEQRGLVQRTVYAEVPPRVEYRI
TALGSTLQQPLQQLAGWMERYGGQLRG

Sequences:

>Translated_107_residues
MAASHCPMLRFVDLIAGKWAIPILYRLIVLDRPVRFGELQRAVGVITQKELTRQLRAFEQRGLVQRTVYAEVPPRVEYRI
TALGSTLQQPLQQLAGWMERYGGQLRG
>Mature_106_residues
AASHCPMLRFVDLIAGKWAIPILYRLIVLDRPVRFGELQRAVGVITQKELTRQLRAFEQRGLVQRTVYAEVPPRVEYRIT
ALGSTLQQPLQQLAGWMERYGGQLRG

Specific function: Unknown

COG id: COG1733

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH hxlR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082391, Length=97, Percent_Identity=35.0515463917526, Blast_Score=68, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002577
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01638 DUF24 [H]

EC number: NA

Molecular weight: Translated: 12263; Mature: 12131

Theoretical pI: Translated: 10.94; Mature: 10.94

Prosite motif: PS51118 HTH_HXLR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAASHCPMLRFVDLIAGKWAIPILYRLIVLDRPVRFGELQRAVGVITQKELTRQLRAFEQ
CCCCCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
RGLVQRTVYAEVPPRVEYRITALGSTLQQPLQQLAGWMERYGGQLRG
CCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
AASHCPMLRFVDLIAGKWAIPILYRLIVLDRPVRFGELQRAVGVITQKELTRQLRAFEQ
CCCCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
RGLVQRTVYAEVPPRVEYRITALGSTLQQPLQQLAGWMERYGGQLRG
CCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]