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The map label for this gene is phnF [C]

Identifier: 34497302

GI number: 34497302

Start: 2001111

End: 2001833

Strand: Direct

Name: phnF [C]

Synonym: CV_1847

Alternate gene names: 34497302

Gene position: 2001111-2001833 (Clockwise)

Preceding gene: 34497293

Following gene: 34497303

Centisome position: 42.12

GC content: 66.25

Gene sequence:

>723_bases
ATGATAGAGAGGGGTTCCGGCGTCGCCGTGTGGCGACAGATCGAGGAAACGCTGGCGGCCGACATCGCCGCCGGCGCGCT
GCATGCGGGCCAGCAACTGCCCACCGAGCTGCAACTGGCGGACAGGTTCGGCGTCAACCGCCACACGATACGCCGCGCGG
TGGCCACGCTGGTGGAGCGCGGCCTGCTGCGCGTGGAGCAAGGACGGGGCACTTTCGTCCAGGACAACGCGATCGACTAC
GCGATCAGCAAGCGCACCCGCTTTTCACAGAACATGGCGCGGCAGAATCTCAGCTCGGACATCGACATTCTGCAAAGCGA
CACGATGCCGGCCAACGCCGAACTGGCGGGACTGCTGCAGGTGGCGGTGGGCGACACCCTGTTCCGCATCAAGGTATTGA
GCAAGGTGGAAAACCGGGTGGTGGATTATGCGACGATGTTTTTCCCGGCGGCGCGGCTGCCCGGTCTGCCGGACGCCTAT
CTGCGCCACCGCTCTGTGACGCGCGCGCTGGACGACTGCGGCGTGGCCGACTACACCCGCCGCTTCACCCGCGTCACTGC
GCGGCTGCCGGACGCGGAGACGGTGGACTATCTGGGGATCCCCAAGAACCGGCCGGTGCTGCACGTGAAGTCGCTGAACG
TCGACGGCGAGGGCCGGCCGGTGCAGTACGGCGTCACCTGCTTCAACGGCGACCTGGTGCAATTGGTGATGGAGCAGGAA
TGA

Upstream 100 bases:

>100_bases
ATGATAATGGCTGCATGGAATGAATTAACAGCATGCGGCGATGAAGTTTTTGTGACGTTTTCAAGGCGGGCATGGATCTT
TATAAAGACAGGGAGGCAGC

Downstream 100 bases:

>100_bases
TGCGCTATGCCGCCTATTACGCGCCCCGACCAGATTCCGCATTGTGGCGCGCCGGCTGCGAATGGCTGGGGTATGACGCC
GCCGGCGGCGCCCAGCTGCC

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 240; Mature: 240

Protein sequence:

>240_residues
MIERGSGVAVWRQIEETLAADIAAGALHAGQQLPTELQLADRFGVNRHTIRRAVATLVERGLLRVEQGRGTFVQDNAIDY
AISKRTRFSQNMARQNLSSDIDILQSDTMPANAELAGLLQVAVGDTLFRIKVLSKVENRVVDYATMFFPAARLPGLPDAY
LRHRSVTRALDDCGVADYTRRFTRVTARLPDAETVDYLGIPKNRPVLHVKSLNVDGEGRPVQYGVTCFNGDLVQLVMEQE

Sequences:

>Translated_240_residues
MIERGSGVAVWRQIEETLAADIAAGALHAGQQLPTELQLADRFGVNRHTIRRAVATLVERGLLRVEQGRGTFVQDNAIDY
AISKRTRFSQNMARQNLSSDIDILQSDTMPANAELAGLLQVAVGDTLFRIKVLSKVENRVVDYATMFFPAARLPGLPDAY
LRHRSVTRALDDCGVADYTRRFTRVTARLPDAETVDYLGIPKNRPVLHVKSLNVDGEGRPVQYGVTCFNGDLVQLVMEQE
>Mature_240_residues
MIERGSGVAVWRQIEETLAADIAAGALHAGQQLPTELQLADRFGVNRHTIRRAVATLVERGLLRVEQGRGTFVQDNAIDY
AISKRTRFSQNMARQNLSSDIDILQSDTMPANAELAGLLQVAVGDTLFRIKVLSKVENRVVDYATMFFPAARLPGLPDAY
LRHRSVTRALDDCGVADYTRRFTRVTARLPDAETVDYLGIPKNRPVLHVKSLNVDGEGRPVQYGVTCFNGDLVQLVMEQE

Specific function: Belongs To An Operon Involved In Alkylphosphonate Uptake And C-P Lyase. Exact Function Not Known. By Similarity Could Be A Transcriptional Regulator. [C]

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790540, Length=218, Percent_Identity=33.9449541284404, Blast_Score=106, Evalue=1e-24,
Organism=Escherichia coli, GI1786950, Length=222, Percent_Identity=27.027027027027, Blast_Score=95, Evalue=5e-21,
Organism=Escherichia coli, GI1788418, Length=234, Percent_Identity=27.3504273504274, Blast_Score=87, Evalue=9e-19,
Organism=Escherichia coli, GI87082252, Length=231, Percent_Identity=24.6753246753247, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1790118, Length=226, Percent_Identity=22.1238938053097, Blast_Score=66, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012702
- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 26621; Mature: 26621

Theoretical pI: Translated: 7.57; Mature: 7.57

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIERGSGVAVWRQIEETLAADIAAGALHAGQQLPTELQLADRFGVNRHTIRRAVATLVER
CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHH
GLLRVEQGRGTFVQDNAIDYAISKRTRFSQNMARQNLSSDIDILQSDTMPANAELAGLLQ
HCEEEECCCCCEEECCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHHHHH
VAVGDTLFRIKVLSKVENRVVDYATMFFPAARLPGLPDAYLRHRSVTRALDDCGVADYTR
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHH
RFTRVTARLPDAETVDYLGIPKNRPVLHVKSLNVDGEGRPVQYGVTCFNGDLVQLVMEQE
HHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEEEEECCCEEEEEECCC
>Mature Secondary Structure
MIERGSGVAVWRQIEETLAADIAAGALHAGQQLPTELQLADRFGVNRHTIRRAVATLVER
CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHH
GLLRVEQGRGTFVQDNAIDYAISKRTRFSQNMARQNLSSDIDILQSDTMPANAELAGLLQ
HCEEEECCCCCEEECCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHHHHH
VAVGDTLFRIKVLSKVENRVVDYATMFFPAARLPGLPDAYLRHRSVTRALDDCGVADYTR
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHH
RFTRVTARLPDAETVDYLGIPKNRPVLHVKSLNVDGEGRPVQYGVTCFNGDLVQLVMEQE
HHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEEEEECCCEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481431; 9889346 [H]