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The map label for this gene is kpsD [H]

Identifier: 34496228

GI number: 34496228

Start: 794732

End: 796624

Strand: Reverse

Name: kpsD [H]

Synonym: CV_0773

Alternate gene names: 34496228

Gene position: 796624-794732 (Counterclockwise)

Preceding gene: 34496229

Following gene: 34496227

Centisome position: 16.77

GC content: 50.98

Gene sequence:

>1893_bases
ATGCGTTTTTTAAAATTGCCTGGAAAATCATTGTTAGCTATGTGCCTGCTACTGGGCAGCGCCTGCCTTCATGCCGCAGA
CAGCTACCCAAATGCAGCCACGCCCAACTATGACATAGAGAGTGTCAATGGTCTCCCATCTATCAATAATACACCTATAA
ACACTGGAAAAAATCCTATCCCTGGATCGCCTAAAGTTCAGAATACTCCGCTTCTGGATGAGCATGGCTATTTGCTGGAC
AAGGAAGGAAATCCCAAGCTCCCGCCCTTCACCATATTTATCAAAAACTCGACAGGCCAGACACTACCAATATTTGGTAG
CCGTCTGTTTCAGAATCCGGCGACAAAATTCGATGCACCACAAAGCGTACAAATCAACCCGGATTATATAATCGGCAGTG
GCGACCAATTGCAGATCAAGGGCTGGGGGATGGTTGACATAGACCTGACCCTGACCGTCGATCGTAATGGCGCAATCTAT
CTACCGCGCGTAGGCAATATTTCAGTCGCCGGCGTGCACTACCGCGACCTGCAGGGCGTACTGAAAAAAAGCGTCAGCCG
TGTATTCAATAACTTTGATCTGACTGTCAGCCTGCTGCAAAGCCGATCAGTGCAAATTTACGTTGTCGGCCATGCGCGCC
AACCCGGCAGTTACACCTTAAATGCAATGAGCACGCTGCTTAATGCCCTACTGGAATCCGGTGGGCCTAGCGATAGCGGC
AGCTTGCGCAAAGTCAAGCTGATGCGGGGCGGCAAGGAAGTAGCAACAGTCGATCTGTACGCAATTCTAGTAGACGGCGA
TAAGTCAGAAGACCAAACGCTTCGCGACGGTGACGTGATACAGATCCCGACAGCCGGCCCCCGTGTAGCCGTGTTCGGCG
ATGTCAAGAATCCGGCTATCTACGAATTCAAATCCGGCGAAACCAGCGCCGATCTCTTGCATTGGGCCGGCGGTCTCGAA
TCTGCCGCTGAAGGCAAGGAGCTGTTGATTGAAAAAAATGTCGGCAACCGCTTCCTGAAGCAAGCAAAAGTGCAGGATGA
CTTGCAACCGCTGAACAAAATCCGCCTCAAGGCTGGCGATATCTTCCGACTCAATGTACCGAATGCCCAAGCAGTCAGCG
TGTTGAAAGATGAGCAGTTCGTTACTGTCAGCGGCGAATCCAATGCCACCGGCACATTCCAACTCCGTAAAAACGAGACC
CTGCGCCAGTTGCTGATACGACTTGGCGGCGTAAGCGAATACGGTTATGTATTCGGTACCATGCTGGCTCGCGAAAGCAT
ACGCGAGCAGCAGCAAAAGAAGCTGGATGAGATCGCCTCACGCTTCGAAAAGGATCTTGAACAAAATGCCACGGCTCGTC
TTGCCAAACTGACTGATAAAGACACCATTGCAGCAGTGAACTCAGAATTAGAAGCACAGCGTAAGCTAGCGGCCAAAATG
CGATCCATCAAAGCTGAAGGTCGCGTAGTGCTGGAGTTGAAAGACAGCTCAGCCGAAATCAAGGACCTGCCTGATTTAGA
GCTTAAAGACGGCGACAGGATTGATATTCCGCAACGCCCCGGTACTGTAAATGTCTTAGGCGCAGTTTATCAAGCCAATG
CCTTCATTTACCGCCCGCAACGCAATGTCAATGATTACCTGTCTCTTGCCGGCGGAACCTCGCCGACTGCGGATAAGTCA
TCTGTTTATGTGCTGCGTGCGGATGGCACCGTTGGCAGCAACAATAACAGTGGCTGGTTTTCCAGTGTAAGTGGGATGCG
TATCAACCCAGGTGACACCATCGTGGTACCAGAAGAATTGAACACTGGTAGCTGGACTCAAGCACTCAAGGAATGGACCA
CCATTCTCTATCAATTCGGTCTGGGCGCTGCGGGTCTGAAAGTACTGAAATGA

Upstream 100 bases:

>100_bases
CAATAGCCGCTATCAAAGCAATATAGTTGTTACCCCCAAGCAGGTTGGGGTGCAGCTCAACATTCCCATCCAATAAGTAT
TATAAATTAGGTAATCAAGC

Downstream 100 bases:

>100_bases
GCGTGGATCAGATGAAAGAAATACAGATACAGTCAAGCCAGCCAACTCAAAACGATGAGATCGATTTGACGGCACTTCTG
GTTAAGCTGGCTCGACAGCG

Product: sugar ABC transporter substrate-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 630; Mature: 630

Protein sequence:

>630_residues
MRFLKLPGKSLLAMCLLLGSACLHAADSYPNAATPNYDIESVNGLPSINNTPINTGKNPIPGSPKVQNTPLLDEHGYLLD
KEGNPKLPPFTIFIKNSTGQTLPIFGSRLFQNPATKFDAPQSVQINPDYIIGSGDQLQIKGWGMVDIDLTLTVDRNGAIY
LPRVGNISVAGVHYRDLQGVLKKSVSRVFNNFDLTVSLLQSRSVQIYVVGHARQPGSYTLNAMSTLLNALLESGGPSDSG
SLRKVKLMRGGKEVATVDLYAILVDGDKSEDQTLRDGDVIQIPTAGPRVAVFGDVKNPAIYEFKSGETSADLLHWAGGLE
SAAEGKELLIEKNVGNRFLKQAKVQDDLQPLNKIRLKAGDIFRLNVPNAQAVSVLKDEQFVTVSGESNATGTFQLRKNET
LRQLLIRLGGVSEYGYVFGTMLARESIREQQQKKLDEIASRFEKDLEQNATARLAKLTDKDTIAAVNSELEAQRKLAAKM
RSIKAEGRVVLELKDSSAEIKDLPDLELKDGDRIDIPQRPGTVNVLGAVYQANAFIYRPQRNVNDYLSLAGGTSPTADKS
SVYVLRADGTVGSNNNSGWFSSVSGMRINPGDTIVVPEELNTGSWTQALKEWTTILYQFGLGAAGLKVLK

Sequences:

>Translated_630_residues
MRFLKLPGKSLLAMCLLLGSACLHAADSYPNAATPNYDIESVNGLPSINNTPINTGKNPIPGSPKVQNTPLLDEHGYLLD
KEGNPKLPPFTIFIKNSTGQTLPIFGSRLFQNPATKFDAPQSVQINPDYIIGSGDQLQIKGWGMVDIDLTLTVDRNGAIY
LPRVGNISVAGVHYRDLQGVLKKSVSRVFNNFDLTVSLLQSRSVQIYVVGHARQPGSYTLNAMSTLLNALLESGGPSDSG
SLRKVKLMRGGKEVATVDLYAILVDGDKSEDQTLRDGDVIQIPTAGPRVAVFGDVKNPAIYEFKSGETSADLLHWAGGLE
SAAEGKELLIEKNVGNRFLKQAKVQDDLQPLNKIRLKAGDIFRLNVPNAQAVSVLKDEQFVTVSGESNATGTFQLRKNET
LRQLLIRLGGVSEYGYVFGTMLARESIREQQQKKLDEIASRFEKDLEQNATARLAKLTDKDTIAAVNSELEAQRKLAAKM
RSIKAEGRVVLELKDSSAEIKDLPDLELKDGDRIDIPQRPGTVNVLGAVYQANAFIYRPQRNVNDYLSLAGGTSPTADKS
SVYVLRADGTVGSNNNSGWFSSVSGMRINPGDTIVVPEELNTGSWTQALKEWTTILYQFGLGAAGLKVLK
>Mature_630_residues
MRFLKLPGKSLLAMCLLLGSACLHAADSYPNAATPNYDIESVNGLPSINNTPINTGKNPIPGSPKVQNTPLLDEHGYLLD
KEGNPKLPPFTIFIKNSTGQTLPIFGSRLFQNPATKFDAPQSVQINPDYIIGSGDQLQIKGWGMVDIDLTLTVDRNGAIY
LPRVGNISVAGVHYRDLQGVLKKSVSRVFNNFDLTVSLLQSRSVQIYVVGHARQPGSYTLNAMSTLLNALLESGGPSDSG
SLRKVKLMRGGKEVATVDLYAILVDGDKSEDQTLRDGDVIQIPTAGPRVAVFGDVKNPAIYEFKSGETSADLLHWAGGLE
SAAEGKELLIEKNVGNRFLKQAKVQDDLQPLNKIRLKAGDIFRLNVPNAQAVSVLKDEQFVTVSGESNATGTFQLRKNET
LRQLLIRLGGVSEYGYVFGTMLARESIREQQQKKLDEIASRFEKDLEQNATARLAKLTDKDTIAAVNSELEAQRKLAAKM
RSIKAEGRVVLELKDSSAEIKDLPDLELKDGDRIDIPQRPGTVNVLGAVYQANAFIYRPQRNVNDYLSLAGGTSPTADKS
SVYVLRADGTVGSNNNSGWFSSVSGMRINPGDTIVVPEELNTGSWTQALKEWTTILYQFGLGAAGLKVLK

Specific function: Involved in the translocation of the polysialic acid capsule across the outer membrane to the cell surface. May function as the periplasmic binding element of the PSA transport system, in which it transiently interacts with the membrane component of the t

COG id: COG1596

COG function: function code M; Periplasmic protein involved in polysaccharide export

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli K5 kpsD [H]

Homologues:

Organism=Escherichia coli, GI1787218, Length=261, Percent_Identity=26.4367816091954, Blast_Score=68, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003715 [H]

Pfam domain/function: PF02563 Poly_export [H]

EC number: NA

Molecular weight: Translated: 68530; Mature: 68530

Theoretical pI: Translated: 8.50; Mature: 8.50

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFLKLPGKSLLAMCLLLGSACLHAADSYPNAATPNYDIESVNGLPSINNTPINTGKNPI
CCEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCC
PGSPKVQNTPLLDEHGYLLDKEGNPKLPPFTIFIKNSTGQTLPIFGSRLFQNPATKFDAP
CCCCCCCCCCCCCCCCEEEECCCCCCCCCEEEEEECCCCCEECHHHHHHHCCCCCCCCCC
QSVQINPDYIIGSGDQLQIKGWGMVDIDLTLTVDRNGAIYLPRVGNISVAGVHYRDLQGV
CEEEECCCEEECCCCEEEEEECEEEEEEEEEEECCCCCEEECCCCCEEEEEEEHHHHHHH
LKKSVSRVFNNFDLTVSLLQSRSVQIYVVGHARQPGSYTLNAMSTLLNALLESGGPSDSG
HHHHHHHHHCCCCEEEEEECCCCEEEEEEEECCCCCCEEHHHHHHHHHHHHHCCCCCCCC
SLRKVKLMRGGKEVATVDLYAILVDGDKSEDQTLRDGDVIQIPTAGPRVAVFGDVKNPAI
CEEEEEECCCCCEEEEEEEEEEEEECCCCCCCCCCCCCEEEECCCCCEEEEEECCCCCEE
YEFKSGETSADLLHWAGGLESAAEGKELLIEKNVGNRFLKQAKVQDDLQPLNKIRLKAGD
EEECCCCCHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHEECCCC
IFRLNVPNAQAVSVLKDEQFVTVSGESNATGTFQLRKNETLRQLLIRLGGVSEYGYVFGT
EEEEECCCCHHHHEECCCEEEEEECCCCCCEEEEECCCHHHHHHHHHHCCCCHHHHHHHH
MLARESIREQQQKKLDEIASRFEKDLEQNATARLAKLTDKDTIAAVNSELEAQRKLAAKM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
RSIKAEGRVVLELKDSSAEIKDLPDLELKDGDRIDIPQRPGTVNVLGAVYQANAFIYRPQ
HHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCEECCCCCCCEEEEEEHEEECCEEEECCC
RNVNDYLSLAGGTSPTADKSSVYVLRADGTVGSNNNSGWFSSVSGMRINPGDTIVVPEEL
CCCCHHHEECCCCCCCCCCCEEEEEEECCCCCCCCCCCCEECCCCCEECCCCEEEECCCC
NTGSWTQALKEWTTILYQFGLGAAGLKVLK
CCCHHHHHHHHHHHHHHHHCCCCCCCEECC
>Mature Secondary Structure
MRFLKLPGKSLLAMCLLLGSACLHAADSYPNAATPNYDIESVNGLPSINNTPINTGKNPI
CCEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCC
PGSPKVQNTPLLDEHGYLLDKEGNPKLPPFTIFIKNSTGQTLPIFGSRLFQNPATKFDAP
CCCCCCCCCCCCCCCCEEEECCCCCCCCCEEEEEECCCCCEECHHHHHHHCCCCCCCCCC
QSVQINPDYIIGSGDQLQIKGWGMVDIDLTLTVDRNGAIYLPRVGNISVAGVHYRDLQGV
CEEEECCCEEECCCCEEEEEECEEEEEEEEEEECCCCCEEECCCCCEEEEEEEHHHHHHH
LKKSVSRVFNNFDLTVSLLQSRSVQIYVVGHARQPGSYTLNAMSTLLNALLESGGPSDSG
HHHHHHHHHCCCCEEEEEECCCCEEEEEEEECCCCCCEEHHHHHHHHHHHHHCCCCCCCC
SLRKVKLMRGGKEVATVDLYAILVDGDKSEDQTLRDGDVIQIPTAGPRVAVFGDVKNPAI
CEEEEEECCCCCEEEEEEEEEEEEECCCCCCCCCCCCCEEEECCCCCEEEEEECCCCCEE
YEFKSGETSADLLHWAGGLESAAEGKELLIEKNVGNRFLKQAKVQDDLQPLNKIRLKAGD
EEECCCCCHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHEECCCC
IFRLNVPNAQAVSVLKDEQFVTVSGESNATGTFQLRKNETLRQLLIRLGGVSEYGYVFGT
EEEEECCCCHHHHEECCCEEEEEECCCCCCEEEEECCCHHHHHHHHHHCCCCHHHHHHHH
MLARESIREQQQKKLDEIASRFEKDLEQNATARLAKLTDKDTIAAVNSELEAQRKLAAKM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
RSIKAEGRVVLELKDSSAEIKDLPDLELKDGDRIDIPQRPGTVNVLGAVYQANAFIYRPQ
HHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCEECCCCCCCEEEEEEHEEECCEEEECCC
RNVNDYLSLAGGTSPTADKSSVYVLRADGTVGSNNNSGWFSSVSGMRINPGDTIVVPEEL
CCCCHHHEECCCCCCCCCCCEEEEEEECCCCCCCCCCCCEECCCCCEECCCCEEEECCCC
NTGSWTQALKEWTTILYQFGLGAAGLKVLK
CCCHHHHHHHHHHHHHHHHCCCCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8021185 [H]