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The map label for this gene is rbcR [H]

Identifier: 33864272

GI number: 33864272

Start: 2119998

End: 2120969

Strand: Reverse

Name: rbcR [H]

Synonym: PMT2007

Alternate gene names: 33864272

Gene position: 2120969-2119998 (Counterclockwise)

Preceding gene: 33864278

Following gene: 33864269

Centisome position: 87.98

GC content: 53.7

Gene sequence:

>972_bases
ATGGCCGATCTGCCGTTCACACTCGATCAGTTGCGCATCCTCCACGCCATCGTGAGTGAGGGCAGCTTTAAGAAAGCAGC
CGATAGCCTTTATGTCACTCAGCCGGCGGTGAGCCTGCAGATTCAGAACCTGGAGAAGCAGTTAGAGGTCTCCTTGTTTG
ATCGTGGGGGCCGCAAGGCTCAGCTAACCGAAGCGGGCCGACTTCTGTTGAGCTACTGCGAGCGGATTCTTAGTCAGTGT
CAGGAAGCCTGCCGAGCTCTTGATGATCTTCATGACCTCAAAGGTGGATCATTAGTGATTGGGGCTAGCCAGACGACTGG
CACCTATTTGATGCCGCGCATGATTGGCTTATTTCGCCAAAAGTACCCGGACGTGGCTGTGCAATTGCAAGTGCACAGCA
CTCGACGCACCGGCTGGAGCATTGCCAATGGTCAAATTGATCTAGCGATCATTGGAGGCGAGCTGCCATCGGAGCTCAAC
GATCTTCTTCAGGTTGTGCCATACGCCAGCGATGAACTGGCCCTGGTTCTTCCGGTGAAACATCCTTTGTCGAGGCTTGT
TGAACTCACCAAGGAAGACCTCTATCGCTTGGGTTTTATCAGTCTTGATTCCCAGTCCACCACTCGCAAGATGCTGGACC
AGCTTCTAGCTCGATCTGGCTTGGATGTGCAGCGCTTGCGGATAGAGATGGAGCTCAATTCTCTTGAGGCGATCAAGAAT
GCAGTTCAATCTGGTCTTGGGGCAGCCTTTTTGCCTGTGGTATCGATTGAACGTGAACTCACCGCCGGCACAGTGCACAA
ACCGTTGGTGGTTGATCTGCAGGTGCGTCGTCAGCTGAAGTTGATCAGCCATCCTGCGCGTTACTGTTCCCGCGCAGCAG
AAGCCTTTAGGCGTGATGTGCTGCCAGTGTTTGCTAGTGCCGACAGCCCCATTCGTCAGAACAGGGCCGTTCTTGCAGAT
GTCAATGGTTAA

Upstream 100 bases:

>100_bases
CAATTGTGCCAAGTGGCAGTGGCAATGATTATCGATTCTGGCGTCCAGGCTTTTCCGCTTACAGTTTTTCTGTTGTTACT
GCCGGGTTGGCAGGTCCTCC

Downstream 100 bases:

>100_bases
GAGTCGACTCAGAATTGATCTGCTTCCGGTGTTACGCCCACGGAATCGTCAGCAACTCCTTTAGTAATAAATTTATTCTC
TCTGATATCTGTCTGGTAGA

Product: Rubisco transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 323; Mature: 322

Protein sequence:

>323_residues
MADLPFTLDQLRILHAIVSEGSFKKAADSLYVTQPAVSLQIQNLEKQLEVSLFDRGGRKAQLTEAGRLLLSYCERILSQC
QEACRALDDLHDLKGGSLVIGASQTTGTYLMPRMIGLFRQKYPDVAVQLQVHSTRRTGWSIANGQIDLAIIGGELPSELN
DLLQVVPYASDELALVLPVKHPLSRLVELTKEDLYRLGFISLDSQSTTRKMLDQLLARSGLDVQRLRIEMELNSLEAIKN
AVQSGLGAAFLPVVSIERELTAGTVHKPLVVDLQVRRQLKLISHPARYCSRAAEAFRRDVLPVFASADSPIRQNRAVLAD
VNG

Sequences:

>Translated_323_residues
MADLPFTLDQLRILHAIVSEGSFKKAADSLYVTQPAVSLQIQNLEKQLEVSLFDRGGRKAQLTEAGRLLLSYCERILSQC
QEACRALDDLHDLKGGSLVIGASQTTGTYLMPRMIGLFRQKYPDVAVQLQVHSTRRTGWSIANGQIDLAIIGGELPSELN
DLLQVVPYASDELALVLPVKHPLSRLVELTKEDLYRLGFISLDSQSTTRKMLDQLLARSGLDVQRLRIEMELNSLEAIKN
AVQSGLGAAFLPVVSIERELTAGTVHKPLVVDLQVRRQLKLISHPARYCSRAAEAFRRDVLPVFASADSPIRQNRAVLAD
VNG
>Mature_322_residues
ADLPFTLDQLRILHAIVSEGSFKKAADSLYVTQPAVSLQIQNLEKQLEVSLFDRGGRKAQLTEAGRLLLSYCERILSQCQ
EACRALDDLHDLKGGSLVIGASQTTGTYLMPRMIGLFRQKYPDVAVQLQVHSTRRTGWSIANGQIDLAIIGGELPSELND
LLQVVPYASDELALVLPVKHPLSRLVELTKEDLYRLGFISLDSQSTTRKMLDQLLARSGLDVQRLRIEMELNSLEAIKNA
VQSGLGAAFLPVVSIERELTAGTVHKPLVVDLQVRRQLKLISHPARYCSRAAEAFRRDVLPVFASADSPIRQNRAVLADV
NG

Specific function: Trans-acting transcriptional regulator of RuBisCO genes (rbcL and rbcS) expression [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788481, Length=291, Percent_Identity=31.9587628865979, Blast_Score=123, Evalue=1e-29,
Organism=Escherichia coli, GI157672245, Length=237, Percent_Identity=31.6455696202532, Blast_Score=121, Evalue=6e-29,
Organism=Escherichia coli, GI145693105, Length=289, Percent_Identity=26.2975778546713, Blast_Score=101, Evalue=8e-23,
Organism=Escherichia coli, GI1787530, Length=304, Percent_Identity=26.3157894736842, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1790399, Length=293, Percent_Identity=27.6450511945392, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1788296, Length=244, Percent_Identity=28.6885245901639, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI87082132, Length=257, Percent_Identity=28.4046692607004, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1787879, Length=251, Percent_Identity=30.6772908366534, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1788748, Length=294, Percent_Identity=28.5714285714286, Blast_Score=88, Evalue=8e-19,
Organism=Escherichia coli, GI1788887, Length=197, Percent_Identity=31.4720812182741, Blast_Score=85, Evalue=6e-18,
Organism=Escherichia coli, GI1789204, Length=258, Percent_Identity=26.7441860465116, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1788297, Length=259, Percent_Identity=26.6409266409266, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI87082024, Length=275, Percent_Identity=29.0909090909091, Blast_Score=79, Evalue=6e-16,
Organism=Escherichia coli, GI87081904, Length=177, Percent_Identity=31.0734463276836, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1788626, Length=257, Percent_Identity=29.1828793774319, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1790208, Length=236, Percent_Identity=27.9661016949153, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1786401, Length=262, Percent_Identity=28.6259541984733, Blast_Score=69, Evalue=6e-13,
Organism=Escherichia coli, GI1789173, Length=314, Percent_Identity=29.2993630573248, Blast_Score=68, Evalue=9e-13,
Organism=Escherichia coli, GI1790262, Length=263, Percent_Identity=26.9961977186312, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1789639, Length=122, Percent_Identity=30.327868852459, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1786448, Length=268, Percent_Identity=30.9701492537313, Blast_Score=66, Evalue=4e-12,
Organism=Escherichia coli, GI48994962, Length=115, Percent_Identity=34.7826086956522, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI1789492, Length=270, Percent_Identity=27.4074074074074, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1787128, Length=127, Percent_Identity=32.2834645669291, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1789506, Length=252, Percent_Identity=26.984126984127, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 35689; Mature: 35558

Theoretical pI: Translated: 7.98; Mature: 7.98

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADLPFTLDQLRILHAIVSEGSFKKAADSLYVTQPAVSLQIQNLEKQLEVSLFDRGGRKA
CCCCCCHHHHHHHHHHHHCCCCHHHHHCCEEEECCHHHHHHHHHHHHHHHHHHCCCCCEE
QLTEAGRLLLSYCERILSQCQEACRALDDLHDLKGGSLVIGASQTTGTYLMPRMIGLFRQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHH
KYPDVAVQLQVHSTRRTGWSIANGQIDLAIIGGELPSELNDLLQVVPYASDELALVLPVK
CCCCEEEEEEEECCCCCCCEEECCEEEEEEECCCCCHHHHHHHHHCCCCCCCEEEEEECH
HPLSRLVELTKEDLYRLGFISLDSQSTTRKMLDQLLARSGLDVQRLRIEMELNSLEAIKN
HHHHHHHHHHHHHHHHHCEEEECCCHHHHHHHHHHHHHCCCCHHHEEEEHHHHHHHHHHH
AVQSGLGAAFLPVVSIERELTAGTVHKPLVVDLQVRRQLKLISHPARYCSRAAEAFRRDV
HHHHCCCHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LPVFASADSPIRQNRAVLADVNG
HHHHHCCCCCHHCCCEEEEECCC
>Mature Secondary Structure 
ADLPFTLDQLRILHAIVSEGSFKKAADSLYVTQPAVSLQIQNLEKQLEVSLFDRGGRKA
CCCCCHHHHHHHHHHHHCCCCHHHHHCCEEEECCHHHHHHHHHHHHHHHHHHCCCCCEE
QLTEAGRLLLSYCERILSQCQEACRALDDLHDLKGGSLVIGASQTTGTYLMPRMIGLFRQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHH
KYPDVAVQLQVHSTRRTGWSIANGQIDLAIIGGELPSELNDLLQVVPYASDELALVLPVK
CCCCEEEEEEEECCCCCCCEEECCEEEEEEECCCCCHHHHHHHHHCCCCCCCEEEEEECH
HPLSRLVELTKEDLYRLGFISLDSQSTTRKMLDQLLARSGLDVQRLRIEMELNSLEAIKN
HHHHHHHHHHHHHHHHHCEEEECCCHHHHHHHHHHHHHCCCCHHHEEEEHHHHHHHHHHH
AVQSGLGAAFLPVVSIERELTAGTVHKPLVVDLQVRRQLKLISHPARYCSRAAEAFRRDV
HHHHCCCHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LPVFASADSPIRQNRAVLADVNG
HHHHHCCCCCHHCCCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA