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The map label for this gene is pds [H]

Identifier: 33864269

GI number: 33864269

Start: 2117465

End: 2118883

Strand: Reverse

Name: pds [H]

Synonym: PMT2004

Alternate gene names: 33864269

Gene position: 2118883-2117465 (Counterclockwise)

Preceding gene: 33864272

Following gene: 33864268

Centisome position: 87.89

GC content: 51.44

Gene sequence:

>1419_bases
ATGCGCGTTGCCATCGCAGGAGCAGGTCTGGCTGGACTCTCATGTGCCAAATATCTAGTTGATGCGGGACACATTCCAGT
TGTTTATGAGTCCCGCGATGTGCTTGGCGGCAAAGTTGCGGCTTGGAAGGATGATGATGGTGACTGGTATGAGACTGGTT
TACATATCTTTTTTGGGGCTTATCCAAATATGCTCCAGTTGTTCAAAGAATTGGGCATCGAGGAGCGTTTGCAGTGGAAA
AGTCACTCGATGATCTTCAACCAGCTTGAGGAGCCTGGAACATACAGCCGCTTTGACTTTCCGGATCTTCCAGCTCCATT
CAATGGAGTGGCTGCAATTTTAGGGAATAACGATTTGCTCAGCTGGCCAGAGAAGGTTGCCTTCGGCTTGGGTCTCGTAC
CGGCAATGTTGCGAGGCCAGGATTACGTGGAGGAGTGTGATCAATATTCTTGGACTGAATGGCTGAGGCTCCACAACATC
CCTGAGCGGGTGAATGAGGAGGTTTTCATCGCCATGAGTAAGGCATTGAACTTTATTGACCCTGATGAGATTTCAGCCAC
TGTCATCCTCACGGCGCTCAATCGATTTCTTCAGGAAAAGAATGGTTCCAAGATGGCCTTCCTTGATGGGGCCCCTCCTG
AGCGGCTTTGTCAACCGATGGTGGAGCATATTCAGTCTCATGGTGGCGAGGTTTATCTCAACAGCCCCTTGCGGGAGATC
AAGCTCAGTGAAGACAGCAGTGTGGAGAGCTTTCTGATTGGAGGTGAGCCGGGCAGTGAACCTAGGAATGTTCAAGCCGA
TGCTTATGTCAGTGCTCTTCCTGTGGATCCGCTCAAATTGCTTTTGCCGGCCCCTTGGAAGCAGATGGAGGTGTTTCGCA
AACTCGATGGACTGCGCGGTGTTCCAGTGATCAACATTCATCTCTGGTTCGACCGCAAGCTCACGGATATCGATCACCTG
CTCTTCAGTCGTTCCCCTCTTTTGAGTGTCTACGCCGATATGAGCATTACCTGCAAGGAGTACGAAGATCCAGATCGCTC
TATGTTGGAACTGGTCTTTGCTCCAGCCAAAGATTGGATCGGCCGTAGCGATGAGGACATCATCGAAGCCACATTGGCTG
AGCTAAAGAAGCTTTTCCCGATGCACTTCACAGGCGAAAAACAGGCCAAACTGCGCAAGTACAAGGTCATTAAGACACCC
CTGTCGGTTTATAAGACCACCCCTGGGTGTCAGAAGCTTCGCCCGAGCCAGGAGACTCCGATTGCCAACTTTTTTCTCGC
TGGTGACTTCACAATGCAGCGATACCTTGCGTCGATGGAGGGTGCGGTGCTCAGCGGCAAGTTGTGTGCAAATGCCGTGG
ATAGCTGTGGGGAGAAGTTATCCACGGCCCAGTCTGTTAGCAAGCCTCTCCAGGCCTGA

Upstream 100 bases:

>100_bases
CCGGTCCCGCAATGGGGCCCGCTAGAGCAAGTGAAGGGACTCTAGGAAGAGAATGGGGGAGGGCTCCTTTTAGGGTTGAT
GTTTACTTGTCGTGAGAAGC

Downstream 100 bases:

>100_bases
AGAATGACTCAGCTAGCGCCGGATTCGTCGATTATCAATGCTCAGGCTTGCTTGAGTCTTGATGAGGCTTATGAGGCTTG
TCGGAAGGAAACAGCTCAGT

Product: phytoene desaturase

Products: NA

Alternate protein names: Phytoene desaturase [H]

Number of amino acids: Translated: 472; Mature: 472

Protein sequence:

>472_residues
MRVAIAGAGLAGLSCAKYLVDAGHIPVVYESRDVLGGKVAAWKDDDGDWYETGLHIFFGAYPNMLQLFKELGIEERLQWK
SHSMIFNQLEEPGTYSRFDFPDLPAPFNGVAAILGNNDLLSWPEKVAFGLGLVPAMLRGQDYVEECDQYSWTEWLRLHNI
PERVNEEVFIAMSKALNFIDPDEISATVILTALNRFLQEKNGSKMAFLDGAPPERLCQPMVEHIQSHGGEVYLNSPLREI
KLSEDSSVESFLIGGEPGSEPRNVQADAYVSALPVDPLKLLLPAPWKQMEVFRKLDGLRGVPVINIHLWFDRKLTDIDHL
LFSRSPLLSVYADMSITCKEYEDPDRSMLELVFAPAKDWIGRSDEDIIEATLAELKKLFPMHFTGEKQAKLRKYKVIKTP
LSVYKTTPGCQKLRPSQETPIANFFLAGDFTMQRYLASMEGAVLSGKLCANAVDSCGEKLSTAQSVSKPLQA

Sequences:

>Translated_472_residues
MRVAIAGAGLAGLSCAKYLVDAGHIPVVYESRDVLGGKVAAWKDDDGDWYETGLHIFFGAYPNMLQLFKELGIEERLQWK
SHSMIFNQLEEPGTYSRFDFPDLPAPFNGVAAILGNNDLLSWPEKVAFGLGLVPAMLRGQDYVEECDQYSWTEWLRLHNI
PERVNEEVFIAMSKALNFIDPDEISATVILTALNRFLQEKNGSKMAFLDGAPPERLCQPMVEHIQSHGGEVYLNSPLREI
KLSEDSSVESFLIGGEPGSEPRNVQADAYVSALPVDPLKLLLPAPWKQMEVFRKLDGLRGVPVINIHLWFDRKLTDIDHL
LFSRSPLLSVYADMSITCKEYEDPDRSMLELVFAPAKDWIGRSDEDIIEATLAELKKLFPMHFTGEKQAKLRKYKVIKTP
LSVYKTTPGCQKLRPSQETPIANFFLAGDFTMQRYLASMEGAVLSGKLCANAVDSCGEKLSTAQSVSKPLQA
>Mature_472_residues
MRVAIAGAGLAGLSCAKYLVDAGHIPVVYESRDVLGGKVAAWKDDDGDWYETGLHIFFGAYPNMLQLFKELGIEERLQWK
SHSMIFNQLEEPGTYSRFDFPDLPAPFNGVAAILGNNDLLSWPEKVAFGLGLVPAMLRGQDYVEECDQYSWTEWLRLHNI
PERVNEEVFIAMSKALNFIDPDEISATVILTALNRFLQEKNGSKMAFLDGAPPERLCQPMVEHIQSHGGEVYLNSPLREI
KLSEDSSVESFLIGGEPGSEPRNVQADAYVSALPVDPLKLLLPAPWKQMEVFRKLDGLRGVPVINIHLWFDRKLTDIDHL
LFSRSPLLSVYADMSITCKEYEDPDRSMLELVFAPAKDWIGRSDEDIIEATLAELKKLFPMHFTGEKQAKLRKYKVIKTP
LSVYKTTPGCQKLRPSQETPIANFFLAGDFTMQRYLASMEGAVLSGKLCANAVDSCGEKLSTAQSVSKPLQA

Specific function: This enzyme converts phytoene into zeta-carotene via the intermediary of phytofluene by the symmetrical introduction of two double bonds at the C-11 and C-11' positions of phytoene [H]

COG id: COG3349

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the carotenoid/retinoid oxidoreductase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002937
- InterPro:   IPR014102 [H]

Pfam domain/function: PF01593 Amino_oxidase [H]

EC number: 1.3.99.-

Molecular weight: Translated: 52767; Mature: 52767

Theoretical pI: Translated: 4.92; Mature: 4.92

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVAIAGAGLAGLSCAKYLVDAGHIPVVYESRDVLGGKVAAWKDDDGDWYETGLHIFFGA
CEEEEECCCHHHHHHHHHHHCCCCCEEEECCCCCCCCEEEEEECCCCCHHHHCCCEEECC
YPNMLQLFKELGIEERLQWKSHSMIFNQLEEPGTYSRFDFPDLPAPFNGVAAILGNNDLL
CHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCCC
SWPEKVAFGLGLVPAMLRGQDYVEECDQYSWTEWLRLHNIPERVNEEVFIAMSKALNFID
CCHHHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHCCCHHHHCHHHEEEHHHHCCCCC
PDEISATVILTALNRFLQEKNGSKMAFLDGAPPERLCQPMVEHIQSHGGEVYLNSPLREI
CCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHCCCEEEECCCHHHE
KLSEDSSVESFLIGGEPGSEPRNVQADAYVSALPVDPLKLLLPAPWKQMEVFRKLDGLRG
ECCCCCCCCEEEECCCCCCCCCCCCCCCEEEECCCCHHHHHCCCCHHHHHHHHHHCCCCC
VPVINIHLWFDRKLTDIDHLLFSRSPLLSVYADMSITCKEYEDPDRSMLELVFAPAKDWI
CCEEEEEEEECCCHHHHHHHHHCCCCHHHHHCCCEEEECCCCCCHHHHHHHHHHCCHHHC
GRSDEDIIEATLAELKKLFPMHFTGEKQAKLRKYKVIKTPLSVYKTTPGCQKLRPSQETP
CCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCHHHHCCCCCHHHCCCCCCCC
IANFFLAGDFTMQRYLASMEGAVLSGKLCANAVDSCGEKLSTAQSVSKPLQA
CEEEEEECHHHHHHHHHHHCCCHHCCHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MRVAIAGAGLAGLSCAKYLVDAGHIPVVYESRDVLGGKVAAWKDDDGDWYETGLHIFFGA
CEEEEECCCHHHHHHHHHHHCCCCCEEEECCCCCCCCEEEEEECCCCCHHHHCCCEEECC
YPNMLQLFKELGIEERLQWKSHSMIFNQLEEPGTYSRFDFPDLPAPFNGVAAILGNNDLL
CHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCCC
SWPEKVAFGLGLVPAMLRGQDYVEECDQYSWTEWLRLHNIPERVNEEVFIAMSKALNFID
CCHHHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHCCCHHHHCHHHEEEHHHHCCCCC
PDEISATVILTALNRFLQEKNGSKMAFLDGAPPERLCQPMVEHIQSHGGEVYLNSPLREI
CCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHCCCEEEECCCHHHE
KLSEDSSVESFLIGGEPGSEPRNVQADAYVSALPVDPLKLLLPAPWKQMEVFRKLDGLRG
ECCCCCCCCEEEECCCCCCCCCCCCCCCEEEECCCCHHHHHCCCCHHHHHHHHHHCCCCC
VPVINIHLWFDRKLTDIDHLLFSRSPLLSVYADMSITCKEYEDPDRSMLELVFAPAKDWI
CCEEEEEEEECCCHHHHHHHHHCCCCHHHHHCCCEEEECCCCCCHHHHHHHHHHCCHHHC
GRSDEDIIEATLAELKKLFPMHFTGEKQAKLRKYKVIKTPLSVYKTTPGCQKLRPSQETP
CCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCHHHHCCCCCHHHCCCCCCCC
IANFFLAGDFTMQRYLASMEGAVLSGKLCANAVDSCGEKLSTAQSVSKPLQA
CEEEEEECHHHHHHHHHHHCCCHHCCHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1907510 [H]