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The map label for this gene is deoC [H]

Identifier: 33862485

GI number: 33862485

Start: 242924

End: 243607

Strand: Reverse

Name: deoC [H]

Synonym: PMT0212

Alternate gene names: 33862485

Gene position: 243607-242924 (Counterclockwise)

Preceding gene: 33862486

Following gene: 33862484

Centisome position: 10.1

GC content: 59.5

Gene sequence:

>684_bases
ATGCCTGGACCCTCCCAGCAGCGTGAATTACCGGATCTAGCACCACTGATCAATCAGGCACTGCTCGATCCTCACCTTGA
TCAAGACGTCCTGCAGCAGACCTGTGATGCCGCACGCCACTTCGGCTTTGCAGGTGTATGCACCAACCTCAATCGCCTGC
AGGCGGCGCGCGAACGACTCGGTCCACCAGGTCCAACGCGGCTGATTGCCGTAATCGCTTTTCCCTTCGGTGCCATACCA
AGCACGCTCAAACAAGCCGAAGCGGAATGGGCCGCCGATCATGGAGCTGAAGAGCTCGATGTGGTTCCAGACTTCTGGAC
CCTCAGCCAAGGAAGAGCAGAACTCTTTGCCGAAGAACTCGCCGAGATCTGTGCACTAGGGCTGCCTGTCCACGTCATCC
TCAACATGGCCCGCCTGCCGGCGGATCGCCTGAACTTGGCCGTCGACGCCGCCATCGATGCTGACGTCAGCGGTCTGCAA
AGTGGGAATGGTTTCGGCCCAGCAGTAACGGCAGCTGATATTCGTCTGCTAACAAACCTGGCTCGTGGCCGTTGCGGAAT
CAAAGCAGCCGGGGGGTTACACACTCTCGATCAAGCCCTCGACATGGTGGAAGCAGGCGCAACCCGTCTTGGCACCAGCC
AAGGCCCAGCTCTCATGCAGGCACTACGCCGTGGCCAAACGTGA

Upstream 100 bases:

>100_bases
TTTCCGCGAACAAGAAAGTGGCCAATTGCAGGTGATCTACCGACGTAACCATGGCGGCTACGGGGTTATACAGGCTCGCG
ATTAAGCGTGGGCAATCTTG

Downstream 100 bases:

>100_bases
GTGGAGAACGACGCCTCAACGGCCTCTCTTTGAAGGTGGGACCGCTCGGGGAACATGATCGACTTCTCACTCTGCTCAGC
GATCAAGAAGGAGTGACCCG

Product: deoxyribose-phosphate aldolase (DeoC)

Products: NA

Alternate protein names: Phosphodeoxyriboaldolase; DERA; Deoxyriboaldolase [H]

Number of amino acids: Translated: 227; Mature: 226

Protein sequence:

>227_residues
MPGPSQQRELPDLAPLINQALLDPHLDQDVLQQTCDAARHFGFAGVCTNLNRLQAARERLGPPGPTRLIAVIAFPFGAIP
STLKQAEAEWAADHGAEELDVVPDFWTLSQGRAELFAEELAEICALGLPVHVILNMARLPADRLNLAVDAAIDADVSGLQ
SGNGFGPAVTAADIRLLTNLARGRCGIKAAGGLHTLDQALDMVEAGATRLGTSQGPALMQALRRGQT

Sequences:

>Translated_227_residues
MPGPSQQRELPDLAPLINQALLDPHLDQDVLQQTCDAARHFGFAGVCTNLNRLQAARERLGPPGPTRLIAVIAFPFGAIP
STLKQAEAEWAADHGAEELDVVPDFWTLSQGRAELFAEELAEICALGLPVHVILNMARLPADRLNLAVDAAIDADVSGLQ
SGNGFGPAVTAADIRLLTNLARGRCGIKAAGGLHTLDQALDMVEAGATRLGTSQGPALMQALRRGQT
>Mature_226_residues
PGPSQQRELPDLAPLINQALLDPHLDQDVLQQTCDAARHFGFAGVCTNLNRLQAARERLGPPGPTRLIAVIAFPFGAIPS
TLKQAEAEWAADHGAEELDVVPDFWTLSQGRAELFAEELAEICALGLPVHVILNMARLPADRLNLAVDAAIDADVSGLQS
GNGFGPAVTAADIRLLTNLARGRCGIKAAGGLHTLDQALDMVEAGATRLGTSQGPALMQALRRGQT

Specific function: Unknown

COG id: COG0274

COG function: function code F; Deoxyribose-phosphate aldolase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the deoC/fbaB aldolase family. DeoC type 1 subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR011343
- InterPro:   IPR002915
- InterPro:   IPR022979 [H]

Pfam domain/function: PF01791 DeoC [H]

EC number: =4.1.2.4 [H]

Molecular weight: Translated: 23961; Mature: 23829

Theoretical pI: Translated: 4.73; Mature: 4.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPGPSQQRELPDLAPLINQALLDPHLDQDVLQQTCDAARHFGFAGVCTNLNRLQAARERL
CCCCCCHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHC
GPPGPTRLIAVIAFPFGAIPSTLKQAEAEWAADHGAEELDVVPDFWTLSQGRAELFAEEL
CCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHCCCCCHHHHHHHHHHHHHHHH
AEICALGLPVHVILNMARLPADRLNLAVDAAIDADVSGLQSGNGFGPAVTAADIRLLTNL
HHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCHHHCCCCCCCCCHHHHHHHHHHHHH
ARGRCGIKAAGGLHTLDQALDMVEAGATRLGTSQGPALMQALRRGQT
HHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCC
>Mature Secondary Structure 
PGPSQQRELPDLAPLINQALLDPHLDQDVLQQTCDAARHFGFAGVCTNLNRLQAARERL
CCCCCHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHC
GPPGPTRLIAVIAFPFGAIPSTLKQAEAEWAADHGAEELDVVPDFWTLSQGRAELFAEEL
CCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHCCCCCHHHHHHHHHHHHHHHH
AEICALGLPVHVILNMARLPADRLNLAVDAAIDADVSGLQSGNGFGPAVTAADIRLLTNL
HHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCHHHCCCCCCCCCHHHHHHHHHHHHH
ARGRCGIKAAGGLHTLDQALDMVEAGATRLGTSQGPALMQALRRGQT
HHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12240834 [H]