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The map label for this gene is lrtA [H]

Identifier: 33862486

GI number: 33862486

Start: 243623

End: 244210

Strand: Reverse

Name: lrtA [H]

Synonym: PMT0213

Alternate gene names: 33862486

Gene position: 244210-243623 (Counterclockwise)

Preceding gene: 33862491

Following gene: 33862485

Centisome position: 10.13

GC content: 55.27

Gene sequence:

>588_bases
ATGAAGCTGCTGATCCATGGTCGCAATCTTGAACTAACGCCTGCCCTACGCGAATACACACAATCGAAACTGGAACGGGC
GATTCAACATTTCGAAGACATGGTGAAGGAAGCTGATGTGCACCTTTCAGTCGCCCGAAACCCGAGCGTGCCTCAACAAA
CTGCCGAGGTCACCGTTTTTGCTAACGGCACGGTGATCCGCGCTCAAGAACGCAGTGAAAACCTTTACGCCAGCATTGAT
CTGGTAGCCAGCAAACTCTGCCGTCAACTACGCCGCTACAAGGAACGCCACAGCGATCACCACCACAGCCCCGGGCATCG
AGCCTCGTCAACGCCAACCACTGAAGCGGTGATCGATGAAGCCCCGATCGACGGTTCACTACTCGATGGCAAGGAGGCCC
ACCTCCCCAGCCCAGGCGTTAGGCGCAAATACTTCGCCATGCCGCCAATGAGCGTCGAACAAGCCCGGTATCAACTAGAC
CTGATCGACCACGACTTCTACCTTTTCCGCGAACAAGAAAGTGGCCAATTGCAGGTGATCTACCGACGTAACCATGGCGG
CTACGGGGTTATACAGGCTCGCGATTAA

Upstream 100 bases:

>100_bases
GCACTGGCTCACTGCACTCAAACAGAAAAGTCGATTGGGATTGTGCCGATGTAGAGGTAGTACCTAACTTGCCGATATCA
ATCGGCACCGGAGGGATGCC

Downstream 100 bases:

>100_bases
GCGTGGGCAATCTTGATGCCTGGACCCTCCCAGCAGCGTGAATTACCGGATCTAGCACCACTGATCAATCAGGCACTGCT
CGATCCTCACCTTGATCAAG

Product: light repressed protein A-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 195; Mature: 195

Protein sequence:

>195_residues
MKLLIHGRNLELTPALREYTQSKLERAIQHFEDMVKEADVHLSVARNPSVPQQTAEVTVFANGTVIRAQERSENLYASID
LVASKLCRQLRRYKERHSDHHHSPGHRASSTPTTEAVIDEAPIDGSLLDGKEAHLPSPGVRRKYFAMPPMSVEQARYQLD
LIDHDFYLFREQESGQLQVIYRRNHGGYGVIQARD

Sequences:

>Translated_195_residues
MKLLIHGRNLELTPALREYTQSKLERAIQHFEDMVKEADVHLSVARNPSVPQQTAEVTVFANGTVIRAQERSENLYASID
LVASKLCRQLRRYKERHSDHHHSPGHRASSTPTTEAVIDEAPIDGSLLDGKEAHLPSPGVRRKYFAMPPMSVEQARYQLD
LIDHDFYLFREQESGQLQVIYRRNHGGYGVIQARD
>Mature_195_residues
MKLLIHGRNLELTPALREYTQSKLERAIQHFEDMVKEADVHLSVARNPSVPQQTAEVTVFANGTVIRAQERSENLYASID
LVASKLCRQLRRYKERHSDHHHSPGHRASSTPTTEAVIDEAPIDGSLLDGKEAHLPSPGVRRKYFAMPPMSVEQARYQLD
LIDHDFYLFREQESGQLQVIYRRNHGGYGVIQARD

Specific function: Probably Modulates The Activity Of Sigma(54) (Rpon). [C]

COG id: COG1544

COG function: function code J; Ribosome-associated protein Y (PSrp-1)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein S30Ae family [H]

Homologues:

Organism=Escherichia coli, GI1789595, Length=100, Percent_Identity=35, Blast_Score=60, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003489 [H]

Pfam domain/function: PF02482 Ribosomal_S30AE [H]

EC number: NA

Molecular weight: Translated: 22266; Mature: 22266

Theoretical pI: Translated: 7.43; Mature: 7.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLLIHGRNLELTPALREYTQSKLERAIQHFEDMVKEADVHLSVARNPSVPQQTAEVTVF
CEEEEECCCEEECHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEE
ANGTVIRAQERSENLYASIDLVASKLCRQLRRYKERHSDHHHSPGHRASSTPTTEAVIDE
ECCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHCC
APIDGSLLDGKEAHLPSPGVRRKYFAMPPMSVEQARYQLDLIDHDFYLFREQESGQLQVI
CCCCCCEECCCCCCCCCCCCCCEEEECCCCCHHHHHEEEEEECCCEEEEEECCCCCEEEE
YRRNHGGYGVIQARD
EEECCCCEEEEEECC
>Mature Secondary Structure
MKLLIHGRNLELTPALREYTQSKLERAIQHFEDMVKEADVHLSVARNPSVPQQTAEVTVF
CEEEEECCCEEECHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEE
ANGTVIRAQERSENLYASIDLVASKLCRQLRRYKERHSDHHHSPGHRASSTPTTEAVIDE
ECCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHCC
APIDGSLLDGKEAHLPSPGVRRKYFAMPPMSVEQARYQLDLIDHDFYLFREQESGQLQVI
CCCCCCEECCCCCCCCCCCCCCEEEECCCCCHHHHHEEEEEECCCEEEEEECCCCCEEEE
YRRNHGGYGVIQARD
EEECCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]