| Definition | Helicobacter hepaticus ATCC 51449 chromosome, complete genome. |
|---|---|
| Accession | NC_004917 |
| Length | 1,799,146 |
Click here to switch to the map view.
The map label for this gene is 32266537
Identifier: 32266537
GI number: 32266537
Start: 1016511
End: 1017746
Strand: Direct
Name: 32266537
Synonym: HH1038
Alternate gene names: NA
Gene position: 1016511-1017746 (Clockwise)
Preceding gene: 32266536
Following gene: 32266538
Centisome position: 56.5
GC content: 29.37
Gene sequence:
>1236_bases ATGGGCAATAGTAGTATATTGAGTGATGAAATAAATACCAATGACTATAAACAATATTTTTGTAGAGATTTTTCAAAAAT ACACCAAATAACCGCATATTTAGCAATGTTTCCGCCTAATCTTCCTTATCATTTTATCAAAAAATATTCCCAAAAGGGGG ATTTGGTGTTTGACCCATTTTCTGGAAGAGGAACAACAGCATTTGAAGCTTGCAGAATGGGAAGAAAAGGGATAGGAAAT GACTTAAATCCACTTGCAGTGTGTCTAACAAAAAGTAAAATTGATATACCCAAAAAACATAATATACAAAAAAGACTCGA AAAACTAAAACAAGATTTCACAACTACACGCATTACAAATAAACAAATTAAAAACATTTCAGATGATATTAAAATGCTTT ATGAAGAAAGCGAAACCTTGCCACAACTTGTATATCTAAAAAATAATTTAAACAAAAATAGAAAGATTGATAATTTTATT CTTGCAGTTTTAACAGGCATTATGCACGGCAAACATAGAAAAGATGGGACTTCAATTTATTGTAGCATTGATATGCCTAA TACTTTTAGTATGTCGCCTAATTATATCCGTAATTTCATTGCCAAACATCATCTTAAAAAAATAAAACAAAATGTTTTTG AACTTTTGCAACAACGCATTGAGCATTTATTTCAAAATCAAACAAAAGAATTTCAAAGTTTAGATTCTTATCAAAAAGGT GATTGCTTTAATAAAGATGCAATCAAAAGCACAAAAAAAATCATTAAAAAATATGGAGAAAATAGTGTCCAACTCATTAT TACTTCCCCTCCATACTTAAAAAACATTAATTATGGTAAATATAATTGGATTAGGCTTTGGTTGCTCAATAAGGAAGTAA AAGAAGTAGATAAGAACGTAAGTATTTATCATAATATGCAAAAAATTAAAGGTTTAAAAGATAATTTGGCATTTGAAAAT TATGCTAAATATATGCAAGAACTCTTCAAAAGTTGGGAAAAAATTTTGAAGCCAAAATCCTATGCTTTTGTTGTTATTGG AGATATTGACAAGCGCAACCTTGCAAAAGACACTTGGGATTACATACAAAATAATGGTGGGTGCAAATTACGACTTAAAC ACATTGCCGAAGATGTCATTGCCAATGATAAAGAAAAAAAGGTAACAAGAATTTGGGGTGCAAAAAAAGGCAAGGCAACA AAAATTGATAGAATCTTAGTTTTGCAAAAGGAGTAG
Upstream 100 bases:
>100_bases ATGCTATAATAGGCATTTTATGGAGGCGCAAAGGAAATGGGGAATATCGCTGCCAAACTTTCGTCTTTGTCTCAACTACA AGAAATGAGGGCTAAACGCT
Downstream 100 bases:
>100_bases GCAAATGGGCATTACAGATGAATTTCAAAAGAAACCTCAAGGAGAGTTGATAGAGGCAAAAACAAAATTTTTTGAGGAAA TTAAGAAAGATAAAAATTTT
Product: type II R/M system
Products: NA
Alternate protein names: DNA Methylase; DNA Methylase; DNA Methylase N-4/N-6 Domain Protein; Adenine-Specific DNA Methylase; Site-Specific DNA-Methyltransferase; Type II R/M System; Methyltransferase Cytosine; RNA Methylase; Adenine-Specific DNA Methyltransferase; DNA Methylase N-4/N-6 Domain-Containing Protein; Methylase
Number of amino acids: Translated: 411; Mature: 410
Protein sequence:
>411_residues MGNSSILSDEINTNDYKQYFCRDFSKIHQITAYLAMFPPNLPYHFIKKYSQKGDLVFDPFSGRGTTAFEACRMGRKGIGN DLNPLAVCLTKSKIDIPKKHNIQKRLEKLKQDFTTTRITNKQIKNISDDIKMLYEESETLPQLVYLKNNLNKNRKIDNFI LAVLTGIMHGKHRKDGTSIYCSIDMPNTFSMSPNYIRNFIAKHHLKKIKQNVFELLQQRIEHLFQNQTKEFQSLDSYQKG DCFNKDAIKSTKKIIKKYGENSVQLIITSPPYLKNINYGKYNWIRLWLLNKEVKEVDKNVSIYHNMQKIKGLKDNLAFEN YAKYMQELFKSWEKILKPKSYAFVVIGDIDKRNLAKDTWDYIQNNGGCKLRLKHIAEDVIANDKEKKVTRIWGAKKGKAT KIDRILVLQKE
Sequences:
>Translated_411_residues MGNSSILSDEINTNDYKQYFCRDFSKIHQITAYLAMFPPNLPYHFIKKYSQKGDLVFDPFSGRGTTAFEACRMGRKGIGN DLNPLAVCLTKSKIDIPKKHNIQKRLEKLKQDFTTTRITNKQIKNISDDIKMLYEESETLPQLVYLKNNLNKNRKIDNFI LAVLTGIMHGKHRKDGTSIYCSIDMPNTFSMSPNYIRNFIAKHHLKKIKQNVFELLQQRIEHLFQNQTKEFQSLDSYQKG DCFNKDAIKSTKKIIKKYGENSVQLIITSPPYLKNINYGKYNWIRLWLLNKEVKEVDKNVSIYHNMQKIKGLKDNLAFEN YAKYMQELFKSWEKILKPKSYAFVVIGDIDKRNLAKDTWDYIQNNGGCKLRLKHIAEDVIANDKEKKVTRIWGAKKGKAT KIDRILVLQKE >Mature_410_residues GNSSILSDEINTNDYKQYFCRDFSKIHQITAYLAMFPPNLPYHFIKKYSQKGDLVFDPFSGRGTTAFEACRMGRKGIGND LNPLAVCLTKSKIDIPKKHNIQKRLEKLKQDFTTTRITNKQIKNISDDIKMLYEESETLPQLVYLKNNLNKNRKIDNFIL AVLTGIMHGKHRKDGTSIYCSIDMPNTFSMSPNYIRNFIAKHHLKKIKQNVFELLQQRIEHLFQNQTKEFQSLDSYQKGD CFNKDAIKSTKKIIKKYGENSVQLIITSPPYLKNINYGKYNWIRLWLLNKEVKEVDKNVSIYHNMQKIKGLKDNLAFENY AKYMQELFKSWEKILKPKSYAFVVIGDIDKRNLAKDTWDYIQNNGGCKLRLKHIAEDVIANDKEKKVTRIWGAKKGKATK IDRILVLQKE
Specific function: Unknown
COG id: COG0863
COG function: function code L; DNA modification methylase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 48059; Mature: 47928
Theoretical pI: Translated: 10.23; Mature: 10.23
Prosite motif: PS00093 N4_MTASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGNSSILSDEINTNDYKQYFCRDFSKIHQITAYLAMFPPNLPYHFIKKYSQKGDLVFDPF CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCEEECCC SGRGTTAFEACRMGRKGIGNDLNPLAVCLTKSKIDIPKKHNIQKRLEKLKQDFTTTRITN CCCCCHHHHHHHCCCCCCCCCCCHHHEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHH KQIKNISDDIKMLYEESETLPQLVYLKNNLNKNRKIDNFILAVLTGIMHGKHRKDGTSIY HHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEE CSIDMPNTFSMSPNYIRNFIAKHHLKKIKQNVFELLQQRIEHLFQNQTKEFQSLDSYQKG EEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC DCFNKDAIKSTKKIIKKYGENSVQLIITSPPYLKNINYGKYNWIRLWLLNKEVKEVDKNV CCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEEEEEEEEECHHHHHHHCCH SIYHNMQKIKGLKDNLAFENYAKYMQELFKSWEKILKPKSYAFVVIGDIDKRNLAKDTWD HHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHH YIQNNGGCKLRLKHIAEDVIANDKEKKVTRIWGAKKGKATKIDRILVLQKE HHHCCCCCEEEHHHHHHHHHCCCHHHHHHHHHCCCCCCCCEEEEEEEEECC >Mature Secondary Structure GNSSILSDEINTNDYKQYFCRDFSKIHQITAYLAMFPPNLPYHFIKKYSQKGDLVFDPF CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCEEECCC SGRGTTAFEACRMGRKGIGNDLNPLAVCLTKSKIDIPKKHNIQKRLEKLKQDFTTTRITN CCCCCHHHHHHHCCCCCCCCCCCHHHEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHH KQIKNISDDIKMLYEESETLPQLVYLKNNLNKNRKIDNFILAVLTGIMHGKHRKDGTSIY HHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEE CSIDMPNTFSMSPNYIRNFIAKHHLKKIKQNVFELLQQRIEHLFQNQTKEFQSLDSYQKG EEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC DCFNKDAIKSTKKIIKKYGENSVQLIITSPPYLKNINYGKYNWIRLWLLNKEVKEVDKNV CCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEEEEEEEEECHHHHHHHCCH SIYHNMQKIKGLKDNLAFENYAKYMQELFKSWEKILKPKSYAFVVIGDIDKRNLAKDTWD HHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHH YIQNNGGCKLRLKHIAEDVIANDKEKKVTRIWGAKKGKATKIDRILVLQKE HHHCCCCCEEEHHHHHHHHHCCCHHHHHHHHHCCCCCCCCEEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA