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The map label for this gene is holB

Identifier: 32266119

GI number: 32266119

Start: 598268

End: 598888

Strand: Direct

Name: holB

Synonym: HH0620

Alternate gene names: NA

Gene position: 598268-598888 (Clockwise)

Preceding gene: 32266118

Following gene: 32266120

Centisome position: 33.25

GC content: 33.49

Gene sequence:

>621_bases
ATGATAGGAGAAATTCATATAACACCTTTTCCTCAGAACCTTATAGAAGATTTTACTCACAATCGTGATGAGCAATATTA
TGAAATCTTTGAACGAGAAGATTTTAAAATTGATGATGCAAAAGAAGTAATCGCTCAAAGTTACCTTGCACACGAAAAAG
AAACACTTATTATCATCACTGCTCACAAATATAATCAGGCTGCACAAAATGCTTTGCTTAAAATCATAGAAGAGCCTCCA
CAAAATGTGCGTTTTATCCTTATTGCAAAAAATAAAAACGCTTTTCTTCCCACAATTCGCTCTCGTATGCAGCTTAAAAT
ACATAGGCATAAGAGCGACATTGCACCCTTTGAACTTGATATAAAAAAACTCAACCTGCAATCTATTTATGAATTTTGCA
AACACAATGAAAACGCTCATCACAGCAAAGAGGAAGTGAAACTTCGCATTCAATCACTTCTTTTTGCACTTTTTGAAGCC
AAAATCAAACTCAATGAGCGAGAACTTGCACTTTTTGATAAAGCCATCGCACTCAATCAAAATGATGCAAGTGAAAGAGA
AAATTACATTTTTTTGCCACTTTTGCTTAGAATCTTGCAAAAACAAAAGAATAAACAATGA

Upstream 100 bases:

>100_bases
AAACTCTTAAGTCTTTTTAAACTCTTTGATAGAGCTATTCTTGAGGCTATGTTTAATAGAATCTCACTTGATATATAGCA
AAAAGAAGGAGGATTAGAAA

Downstream 100 bases:

>100_bases
TAGTACAGAGAATCTACCCTCAATCTATTCCTCAAAAAATCCAAGCAATAGGCGCAGATGCCATAGGACAAAAGATTATG
AGCAAAAAAGCACATATTTT

Product: DNA polymerase III subunit delta'

Products: diphosphate; DNAn+1

Alternate protein names: DNA Polymerase III Delta Prime Subunit HolB; DNA Polymerase III Delta Subunit; DNA Polymerase III Delta Prime Subunit; DNA Polymerase III Delta Prime Subunit Holb

Number of amino acids: Translated: 206; Mature: 206

Protein sequence:

>206_residues
MIGEIHITPFPQNLIEDFTHNRDEQYYEIFEREDFKIDDAKEVIAQSYLAHEKETLIIITAHKYNQAAQNALLKIIEEPP
QNVRFILIAKNKNAFLPTIRSRMQLKIHRHKSDIAPFELDIKKLNLQSIYEFCKHNENAHHSKEEVKLRIQSLLFALFEA
KIKLNERELALFDKAIALNQNDASERENYIFLPLLLRILQKQKNKQ

Sequences:

>Translated_206_residues
MIGEIHITPFPQNLIEDFTHNRDEQYYEIFEREDFKIDDAKEVIAQSYLAHEKETLIIITAHKYNQAAQNALLKIIEEPP
QNVRFILIAKNKNAFLPTIRSRMQLKIHRHKSDIAPFELDIKKLNLQSIYEFCKHNENAHHSKEEVKLRIQSLLFALFEA
KIKLNERELALFDKAIALNQNDASERENYIFLPLLLRILQKQKNKQ
>Mature_206_residues
MIGEIHITPFPQNLIEDFTHNRDEQYYEIFEREDFKIDDAKEVIAQSYLAHEKETLIIITAHKYNQAAQNALLKIIEEPP
QNVRFILIAKNKNAFLPTIRSRMQLKIHRHKSDIAPFELDIKKLNLQSIYEFCKHNENAHHSKEEVKLRIQSLLFALFEA
KIKLNERELALFDKAIALNQNDASERENYIFLPLLLRILQKQKNKQ

Specific function: Unknown

COG id: COG0470

COG function: function code L; ATPase involved in DNA replication

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 2.7.7.7

Molecular weight: Translated: 24402; Mature: 24402

Theoretical pI: Translated: 7.85; Mature: 7.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIGEIHITPFPQNLIEDFTHNRDEQYYEIFEREDFKIDDAKEVIAQSYLAHEKETLIIIT
CCCEEECCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCEEEEEE
AHKYNQAAQNALLKIIEEPPQNVRFILIAKNKNAFLPTIRSRMQLKIHRHKSDIAPFELD
ECCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCEEEH
IKKLNLQSIYEFCKHNENAHHSKEEVKLRIQSLLFALFEAKIKLNERELALFDKAIALNQ
HHHCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCC
NDASERENYIFLPLLLRILQKQKNKQ
CCCHHCCCEEEHHHHHHHHHHHHCCC
>Mature Secondary Structure
MIGEIHITPFPQNLIEDFTHNRDEQYYEIFEREDFKIDDAKEVIAQSYLAHEKETLIIIT
CCCEEECCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCEEEEEE
AHKYNQAAQNALLKIIEEPPQNVRFILIAKNKNAFLPTIRSRMQLKIHRHKSDIAPFELD
ECCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCEEEH
IKKLNLQSIYEFCKHNENAHHSKEEVKLRIQSLLFALFEAKIKLNERELALFDKAIALNQ
HHHCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCC
NDASERENYIFLPLLLRILQKQKNKQ
CCCHHCCCEEEHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: deoxynucleoside triphosphate; DNAn

Specific reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1)

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA