| Definition | Helicobacter hepaticus ATCC 51449 chromosome, complete genome. |
|---|---|
| Accession | NC_004917 |
| Length | 1,799,146 |
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The map label for this gene is pgk
Identifier: 32265826
GI number: 32265826
Start: 324933
End: 326141
Strand: Direct
Name: pgk
Synonym: HH0327
Alternate gene names: 32265826
Gene position: 324933-326141 (Clockwise)
Preceding gene: 32265818
Following gene: 32265827
Centisome position: 18.06
GC content: 39.95
Gene sequence:
>1209_bases ATGAAGGAAACTGGAATCGAATTAATGAAAAATACAAAAAGTGTGCGTGATATTGACGTCAAAGACAAAAGAGTGCTTAT TCGCGTGGATTTTAATGTGCCAATGGACGAGGATTTTGATATTTCAGATGATACGCGTATCCGCGAAGCACTACCCACTA TTAATTATTGCATTGATAATCACGCACAAAATATAGTGCTTGTCAGCCATTTAGGGCGTCCCAAAGGACGCAATGCAGAG TTTTCACTCAAACACGTGCTTAAACGTGTAGAGCGACTTTTAGGACGCGATATAGCTTTCGCAGAGACAATAGAAAATGT AGAAAATCTTCAACAACAAAGCAAGAGTGGAAGTGTGATTTTACTTGAAAATATTAGATTCTATGAGGGAGAGGAAAAAA ATGATGAGGAACTCTCTACTAAACTCGCCTCTATTTGTGATGTGTATATCAATGATGCCTTTGGCACAAGCCATCGCGCA CATTCAAGCACCTGTGGCATTGCTAAATATGCCAAAGAGTGTGTAGCAGGATTATTGCTCAAAAAAGAAATTGATTCATT TGCTAAAGCAATGGCAAATCCACTTAAACCGGTGTTACTTATCGTTGGCGGAAGCAAGGTAAGCTCTAAACTCGCACTCT TATATAATATCCTTGATGTGGTGGATAAAATCATCATTGGTGGTGCGATGAGCAATACTTTCCTTAAAGCACGAGGTTTT GATATGCAAAAATCCCTTGTGGAAGATGATTTAGTGAGTGAAGCACGTAAGATTTTGGATAAAGCAAAAGAAAAAAAAGT CAAAATCTACCTTCCTGTAGATGTTGTAAGCACTGATGATATTAAAGAACATCGCCATATCAAAATCACGCCTGCACAAG ATATACCAGAGGGCTTTATGGCAGTAGATATGGGACCTGCAACAAGTAAGCTCTTTAGTGAAGTGGTAAGGGATTCTCAA ACAATTATTTGGAATGGACCGCTTGGCATTTATGAAATACAAGCTTTTTCACGCGGCACTTTTAACCTTGCCCACGCTGT GAGCGATACTTATGCCTTTAGTCTTATTGGTGGTGGCGATACTGCTGATGCAATAGACAAGGCAGGAGAGCGAGACAATA TGAGCTTTATTTCCACGGGTGGTGGAGCAAGTTTGGAGCTACTTGAAGGGAAAATTCTTCCTGCATTTGAGGTGCTTGAG CGCAAATAA
Upstream 100 bases:
>100_bases ATAACATTGTTTATTAAGGATAATACAAAGCACTCATAACGCATATATAAAAATATGATAAAATACCGCATTTATTTACA GAATCTAATAAGGAGCGTAG
Downstream 100 bases:
>100_bases TGAATCTCTTTGCTCTTAGTCTTGAAGCTCTCCACGCTCCAAGCATAGAATCTAAACTTGCTCTCCTTGAAGTAGTTGCA TCTCAAAAACATCTGCTCTG
Product: phosphoglycerate kinase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 402; Mature: 402
Protein sequence:
>402_residues MKETGIELMKNTKSVRDIDVKDKRVLIRVDFNVPMDEDFDISDDTRIREALPTINYCIDNHAQNIVLVSHLGRPKGRNAE FSLKHVLKRVERLLGRDIAFAETIENVENLQQQSKSGSVILLENIRFYEGEEKNDEELSTKLASICDVYINDAFGTSHRA HSSTCGIAKYAKECVAGLLLKKEIDSFAKAMANPLKPVLLIVGGSKVSSKLALLYNILDVVDKIIIGGAMSNTFLKARGF DMQKSLVEDDLVSEARKILDKAKEKKVKIYLPVDVVSTDDIKEHRHIKITPAQDIPEGFMAVDMGPATSKLFSEVVRDSQ TIIWNGPLGIYEIQAFSRGTFNLAHAVSDTYAFSLIGGGDTADAIDKAGERDNMSFISTGGGASLELLEGKILPAFEVLE RK
Sequences:
>Translated_402_residues MKETGIELMKNTKSVRDIDVKDKRVLIRVDFNVPMDEDFDISDDTRIREALPTINYCIDNHAQNIVLVSHLGRPKGRNAE FSLKHVLKRVERLLGRDIAFAETIENVENLQQQSKSGSVILLENIRFYEGEEKNDEELSTKLASICDVYINDAFGTSHRA HSSTCGIAKYAKECVAGLLLKKEIDSFAKAMANPLKPVLLIVGGSKVSSKLALLYNILDVVDKIIIGGAMSNTFLKARGF DMQKSLVEDDLVSEARKILDKAKEKKVKIYLPVDVVSTDDIKEHRHIKITPAQDIPEGFMAVDMGPATSKLFSEVVRDSQ TIIWNGPLGIYEIQAFSRGTFNLAHAVSDTYAFSLIGGGDTADAIDKAGERDNMSFISTGGGASLELLEGKILPAFEVLE RK >Mature_402_residues MKETGIELMKNTKSVRDIDVKDKRVLIRVDFNVPMDEDFDISDDTRIREALPTINYCIDNHAQNIVLVSHLGRPKGRNAE FSLKHVLKRVERLLGRDIAFAETIENVENLQQQSKSGSVILLENIRFYEGEEKNDEELSTKLASICDVYINDAFGTSHRA HSSTCGIAKYAKECVAGLLLKKEIDSFAKAMANPLKPVLLIVGGSKVSSKLALLYNILDVVDKIIIGGAMSNTFLKARGF DMQKSLVEDDLVSEARKILDKAKEKKVKIYLPVDVVSTDDIKEHRHIKITPAQDIPEGFMAVDMGPATSKLFSEVVRDSQ TIIWNGPLGIYEIQAFSRGTFNLAHAVSDTYAFSLIGGGDTADAIDKAGERDNMSFISTGGGASLELLEGKILPAFEVLE RK
Specific function: Second phase of glycolysis; second step. [C]
COG id: COG0126
COG function: function code G; 3-phosphoglycerate kinase
Gene ontology:
Cell location: Cytoplasm (Potential)
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the phosphoglycerate kinase family
Homologues:
Organism=Homo sapiens, GI4505763, Length=415, Percent_Identity=42.4096385542169, Blast_Score=318, Evalue=6e-87, Organism=Homo sapiens, GI31543397, Length=406, Percent_Identity=43.1034482758621, Blast_Score=317, Evalue=2e-86, Organism=Escherichia coli, GI1789294, Length=388, Percent_Identity=42.0103092783505, Blast_Score=309, Evalue=2e-85, Organism=Caenorhabditis elegans, GI17508823, Length=412, Percent_Identity=42.2330097087379, Blast_Score=311, Evalue=3e-85, Organism=Saccharomyces cerevisiae, GI6319857, Length=415, Percent_Identity=44.578313253012, Blast_Score=320, Evalue=3e-88, Organism=Drosophila melanogaster, GI24581203, Length=412, Percent_Identity=42.4757281553398, Blast_Score=304, Evalue=8e-83, Organism=Drosophila melanogaster, GI17136394, Length=412, Percent_Identity=41.2621359223301, Blast_Score=288, Evalue=6e-78,
Paralogues:
None
Copy number: 2990 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1460 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). [C]
Swissprot (AC and ID): PGK_HELHP (Q7VJB6)
Other databases:
- EMBL: AE017125 - RefSeq: NP_859858.1 - ProteinModelPortal: Q7VJB6 - SMR: Q7VJB6 - GeneID: 1493381 - GenomeReviews: AE017125_GR - KEGG: hhe:HH0327 - NMPDR: fig|235279.1.peg.327 - HOGENOM: HBG453500 - OMA: DCIGDEV - ProtClustDB: PRK00073 - BioCyc: HHEP235279:HH_0327-MONOMER - BRENDA: 2.7.2.3 - GO: GO:0005737 - GO: GO:0006096 - HAMAP: MF_00145 - InterPro: IPR001576 - InterPro: IPR015901 - InterPro: IPR015911 - InterPro: IPR015824 - Gene3D: G3DSA:3.40.50.1270 - Gene3D: G3DSA:3.40.50.1260 - PANTHER: PTHR11406 - PIRSF: PIRSF000724 - PRINTS: PR00477
Pfam domain/function: PF00162 PGK; SSF53748 PGK
EC number: =2.7.2.3
Molecular weight: Translated: 44465; Mature: 44465
Theoretical pI: Translated: 5.72; Mature: 5.72
Prosite motif: PS00111 PGLYCERATE_KINASE
Important sites: BINDING 46-46 BINDING 126-126 BINDING 159-159 BINDING 210-210 BINDING 332-332
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKETGIELMKNTKSVRDIDVKDKRVLIRVDFNVPMDEDFDISDDTRIREALPTINYCIDN CCCCHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHC HAQNIVLVSHLGRPKGRNAEFSLKHVLKRVERLLGRDIAFAETIENVENLQQQSKSGSVI CCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCEE LLENIRFYEGEEKNDEELSTKLASICDVYINDAFGTSHRAHSSTCGIAKYAKECVAGLLL EEECCEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH KKEIDSFAKAMANPLKPVLLIVGGSKVSSKLALLYNILDVVDKIIIGGAMSNTFLKARGF HHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCHHCCCHHHCCC DMQKSLVEDDLVSEARKILDKAKEKKVKIYLPVDVVSTDDIKEHRHIKITPAQDIPEGFM CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEEECCCCCCCCCEEEEECCCCCCCCCE AVDMGPATSKLFSEVVRDSQTIIWNGPLGIYEIQAFSRGTFNLAHAVSDTYAFSLIGGGD EEECCCHHHHHHHHHHCCCCEEEECCCCCEEEEEECCCCCHHHHHHHCCCEEEEEECCCC TADAIDKAGERDNMSFISTGGGASLELLEGKILPAFEVLERK CHHHHHHCCCCCCCEEEECCCCCEEEEECCCCCCHHHHHCCC >Mature Secondary Structure MKETGIELMKNTKSVRDIDVKDKRVLIRVDFNVPMDEDFDISDDTRIREALPTINYCIDN CCCCHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHC HAQNIVLVSHLGRPKGRNAEFSLKHVLKRVERLLGRDIAFAETIENVENLQQQSKSGSVI CCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCEE LLENIRFYEGEEKNDEELSTKLASICDVYINDAFGTSHRAHSSTCGIAKYAKECVAGLLL EEECCEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH KKEIDSFAKAMANPLKPVLLIVGGSKVSSKLALLYNILDVVDKIIIGGAMSNTFLKARGF HHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCHHCCCHHHCCC DMQKSLVEDDLVSEARKILDKAKEKKVKIYLPVDVVSTDDIKEHRHIKITPAQDIPEGFM CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEEECCCCCCCCCEEEEECCCCCCCCCE AVDMGPATSKLFSEVVRDSQTIIWNGPLGIYEIQAFSRGTFNLAHAVSDTYAFSLIGGGD EEECCCHHHHHHHHHHCCCCEEEECCCCCEEEEEECCCCCHHHHHHHCCCEEEEEECCCC TADAIDKAGERDNMSFISTGGGASLELLEGKILPAFEVLERK CHHHHHHCCCCCCCEEEECCCCCEEEEECCCCCCHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12810954