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The map label for this gene is rbpE [H]

Identifier: 32265818

GI number: 32265818

Start: 316541

End: 316792

Strand: Direct

Name: rbpE [H]

Synonym: HH0319

Alternate gene names: 32265818

Gene position: 316541-316792 (Clockwise)

Preceding gene: 32265817

Following gene: 32265826

Centisome position: 17.59

GC content: 39.29

Gene sequence:

>252_bases
TTGAAAACACTTTATGTAGGAAACTTGGTTTATGCAGTTACACGTGATGAGGTTCAGGATCTTTTCTCCCAATTCGGTGA
AGTTTTTTCTGTTAAACTTATTAATGATAGGGAGAGTGGTAAGCCAAAAGGCTTTGGTTTTGTAGAAATGGACGATGAAG
CTGCACCTAAAGCTATTGACGCGCTCAATGAAAAAGATTTTCGTGGTCGCAACCTTCGTGTAAATGAAGCAAGACCACGT
GAGCAATTCTAA

Upstream 100 bases:

>100_bases
ATAATGCAATAGTATCTTTTTAAGAAACTTATAAGTAAATAAATCGTAGCATACAAGGACGTCCTTAAAGTTGGGGGTTA
GTTATTTTTTAGGAGTTGCT

Downstream 100 bases:

>100_bases
AGCCTAGCAGATTCTAGGGAGTAACTCGCCTTGTGGATATTCCACATATCGTTTTCCACCCCACGCATTGCATAAAATAA
CACGTGCTTGATTTATATCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 83; Mature: 83

Protein sequence:

>83_residues
MKTLYVGNLVYAVTRDEVQDLFSQFGEVFSVKLINDRESGKPKGFGFVEMDDEAAPKAIDALNEKDFRGRNLRVNEARPR
EQF

Sequences:

>Translated_83_residues
MKTLYVGNLVYAVTRDEVQDLFSQFGEVFSVKLINDRESGKPKGFGFVEMDDEAAPKAIDALNEKDFRGRNLRVNEARPR
EQF
>Mature_83_residues
MKTLYVGNLVYAVTRDEVQDLFSQFGEVFSVKLINDRESGKPKGFGFVEMDDEAAPKAIDALNEKDFRGRNLRVNEARPR
EQF

Specific function: Unknown

COG id: COG0724

COG function: function code R; RNA-binding proteins (RRM domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RRM (RNA recognition motif) domain [H]

Homologues:

Organism=Homo sapiens, GI14149675, Length=78, Percent_Identity=46.1538461538462, Blast_Score=80, Evalue=5e-16,
Organism=Homo sapiens, GI4557493, Length=78, Percent_Identity=46.1538461538462, Blast_Score=78, Evalue=1e-15,
Organism=Homo sapiens, GI35493811, Length=78, Percent_Identity=38.4615384615385, Blast_Score=63, Evalue=6e-11,
Organism=Homo sapiens, GI4757926, Length=78, Percent_Identity=38.4615384615385, Blast_Score=63, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI17508587, Length=79, Percent_Identity=48.1012658227848, Blast_Score=77, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17553656, Length=77, Percent_Identity=45.4545454545455, Blast_Score=77, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17508567, Length=76, Percent_Identity=47.3684210526316, Blast_Score=75, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI17508585, Length=76, Percent_Identity=40.7894736842105, Blast_Score=71, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17539498, Length=79, Percent_Identity=46.8354430379747, Blast_Score=67, Evalue=2e-12,
Organism=Saccharomyces cerevisiae, GI6321599, Length=79, Percent_Identity=40.5063291139241, Blast_Score=61, Evalue=3e-11,
Organism=Drosophila melanogaster, GI17137710, Length=78, Percent_Identity=48.7179487179487, Blast_Score=78, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012677
- InterPro:   IPR000504
- InterPro:   IPR015465 [H]

Pfam domain/function: PF00076 RRM_1 [H]

EC number: NA

Molecular weight: Translated: 9515; Mature: 9515

Theoretical pI: Translated: 4.84; Mature: 4.84

Prosite motif: PS50102 RRM

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTLYVGNLVYAVTRDEVQDLFSQFGEVFSVKLINDRESGKPKGFGFVEMDDEAAPKAID
CCEEEECCEEEEECHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCCEEEECCCCCCHHHH
ALNEKDFRGRNLRVNEARPREQF
HCCCCCCCCCCEEECCCCCCCCC
>Mature Secondary Structure
MKTLYVGNLVYAVTRDEVQDLFSQFGEVFSVKLINDRESGKPKGFGFVEMDDEAAPKAID
CCEEEECCEEEEECHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCCEEEECCCCCCHHHH
ALNEKDFRGRNLRVNEARPREQF
HCCCCCCCCCCEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]