Click here to switch to the map view.

The map label for this gene is ykoX [H]

Identifier: 32265540

GI number: 32265540

Start: 45310

End: 45990

Strand: Direct

Name: ykoX [H]

Synonym: HH0041

Alternate gene names: 32265540

Gene position: 45310-45990 (Clockwise)

Preceding gene: 32265530

Following gene: 32265543

Centisome position: 2.52

GC content: 33.48

Gene sequence:

>681_bases
TTGGGAGCGCTACTTGGAAATATTATCAATAGTATTGTAGAAATTGTAGGTAATTTAGGCTATATAGGGATTTTTATAAT
GATGTTTTTAGAATCAAGTTTTTTTCCCTTCCCCTCTGAAGTAGTAATGATACCCGCTGGATATTTAGTTTTTAAAGGTG
AAATGAATGCTATTATTGCTGTGATTTGTGGCATTGCTGGTTCTCTTGCAGGTGCGTTATTTAATTATTACATTGCACTC
AAATTTGGAAGAGATTTTCTTATCCGCTATGGAAAATATGTATTTTTTACAGAATCTACAATGCAAAAAATGGAGGCTTT
TTTTATTAAACACGGACCAATGAGCACATTTGTAGGAAGACTTATTACAATTATAAGACAATACATCTCTCTTCCTGCAG
GACTTGCAAGAATGAATCTTGTAAAATTTTGTCTTTATACATCTCTTGGTGCTGGGATTTGGGTTATTATCCTCACACTC
ATTGGATATTATGCAGGTGTATGGTTTGGCACAGATATGAGTGTAGATTCTATAATCCACGCTTTTACTTCCACTACTCC
AACCACGCAAGAAATAGAGCTTAAAAATATAGTCAAACAAGCAGGATTATATACACTCGGCTTTGTAATACTATGTTTAG
TAGGCTATATATGTTATTGGCGTATTCAAAAACAAGCATAA

Upstream 100 bases:

>100_bases
TATAGATTCTAAATTAATTAAAAAAGTATGGCATTATATCAAACTAAAATAATGACGAGATATTTATAAAATAAATTTAT
TGACTTAATGGAGTAAAAGT

Downstream 100 bases:

>100_bases
TCAAGAGAGCATCAATGCAGTGCAATAAATTTAAAAATGGAATTTCTTAATGCCTAAGAAAAAAAGACTGATTTTTTGCA
TAAAAGTGAGTTTGTTTTGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 226; Mature: 225

Protein sequence:

>226_residues
MGALLGNIINSIVEIVGNLGYIGIFIMMFLESSFFPFPSEVVMIPAGYLVFKGEMNAIIAVICGIAGSLAGALFNYYIAL
KFGRDFLIRYGKYVFFTESTMQKMEAFFIKHGPMSTFVGRLITIIRQYISLPAGLARMNLVKFCLYTSLGAGIWVIILTL
IGYYAGVWFGTDMSVDSIIHAFTSTTPTTQEIELKNIVKQAGLYTLGFVILCLVGYICYWRIQKQA

Sequences:

>Translated_226_residues
MGALLGNIINSIVEIVGNLGYIGIFIMMFLESSFFPFPSEVVMIPAGYLVFKGEMNAIIAVICGIAGSLAGALFNYYIAL
KFGRDFLIRYGKYVFFTESTMQKMEAFFIKHGPMSTFVGRLITIIRQYISLPAGLARMNLVKFCLYTSLGAGIWVIILTL
IGYYAGVWFGTDMSVDSIIHAFTSTTPTTQEIELKNIVKQAGLYTLGFVILCLVGYICYWRIQKQA
>Mature_225_residues
GALLGNIINSIVEIVGNLGYIGIFIMMFLESSFFPFPSEVVMIPAGYLVFKGEMNAIIAVICGIAGSLAGALFNYYIALK
FGRDFLIRYGKYVFFTESTMQKMEAFFIKHGPMSTFVGRLITIIRQYISLPAGLARMNLVKFCLYTSLGAGIWVIILTLI
GYYAGVWFGTDMSVDSIIHAFTSTTPTTQEIELKNIVKQAGLYTLGFVILCLVGYICYWRIQKQA

Specific function: Unknown

COG id: COG0586

COG function: function code S; Uncharacterized membrane-associated protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dedA family [H]

Homologues:

Organism=Escherichia coli, GI1788656, Length=169, Percent_Identity=27.810650887574, Blast_Score=64, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 25145; Mature: 25014

Theoretical pI: Translated: 8.81; Mature: 8.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGALLGNIINSIVEIVGNLGYIGIFIMMFLESSFFPFPSEVVMIPAGYLVFKGEMNAIIA
CCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCEEEECCCEEEEECCHHHHHH
VICGIAGSLAGALFNYYIALKFGRDFLIRYGKYVFFTESTMQKMEAFFIKHGPMSTFVGR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEHHHHHHHHHHHHCCCCHHHHHHH
LITIIRQYISLPAGLARMNLVKFCLYTSLGAGIWVIILTLIGYYAGVWFGTDMSVDSIIH
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
AFTSTTPTTQEIELKNIVKQAGLYTLGFVILCLVGYICYWRIQKQA
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
GALLGNIINSIVEIVGNLGYIGIFIMMFLESSFFPFPSEVVMIPAGYLVFKGEMNAIIA
CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCEEEECCCEEEEECCHHHHHH
VICGIAGSLAGALFNYYIALKFGRDFLIRYGKYVFFTESTMQKMEAFFIKHGPMSTFVGR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEHHHHHHHHHHHHCCCCHHHHHHH
LITIIRQYISLPAGLARMNLVKFCLYTSLGAGIWVIILTLIGYYAGVWFGTDMSVDSIIH
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
AFTSTTPTTQEIELKNIVKQAGLYTLGFVILCLVGYICYWRIQKQA
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]