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The map label for this gene is hpaA

Identifier: 30065588

GI number: 30065588

Start: 4541304

End: 4542194

Strand: Reverse

Name: hpaA

Synonym: S4647

Alternate gene names: 30065588

Gene position: 4542194-4541304 (Counterclockwise)

Preceding gene: 30065589

Following gene: 30065587

Centisome position: 98.76

GC content: 46.02

Gene sequence:

>891_bases
ATGTCCAGTGAAGCTATCTTTGAACATGGTTATGAAAATATTGATTTGGTCCGGGAATATGATGCCCGCTACGCTGGTGA
AGATGTGCATTATGAAACATTTGCCCGGTTAGCGAATTTCTTTGGACGCGATATGCGCCCTCACTGGCACGATAGATATT
TTCAACTCCATTATCTGGTCACTGGACGCATTACTTTACAACTGGATGAGCACTTCTATTCTGTGCGCGCACCGCTTTTT
GTACTAACACCACCATCGGTGCCACATACTTTCTTTACTAATCCTGATAGCGATGGGCATGTTCTGACCGTACGTCAGGA
GTTAATTTGGCCCCTGGTAGAAAAGCTCTGGCCTGGTAGTGGAGATGCCGCAATGCTACAAGGTATCTGTCTGTCACTGG
AGGGAATGGAACATACACTGGCGGCATTAAATCATTATTGGCCGATAATATCCCTGGAGTTTCAACAAAATAAGCAAGGA
CGGGAAATTCTATTGCAATCACTGGCGCAAAGTATTTTTACAATCCTACTGCGTGAAGCACCACCAAATGATATTTCAAC
ATGCAGCGTGCGCGGCGAGATGTGTTTATTCCAGAAGTTTAATCGGCTGATTGACGAAAATTATCGCCAACATTTAATGG
TCCCTGAATATGCAACAATGCTCGGTATGAGTGAATCACGGCTTACCGAGCTGTGCCGACGTTTTGCCAATCAATCGCCG
AAGAGATTGATTTTCGAACGAGTGAGCCGGGAAGCCAGACGGCTTCTGCTCTATAGCGAGCAAAGCATCAACCAGATAGC
CCTTGATCTTGGCTACAAAGATCCCGCCTATTTCGCCCGTTTTTTCAACCGAATGATGGGTTGCTCACCAACACAATTCC
GTGGTCGCTGA

Upstream 100 bases:

>100_bases
GGTACTGGGCGCGTTAGTCATGACCCGAATCCCTATGGGGAGTCGGGAACACTCTCTTTCATCTGAACTTATCGCACCAA
AACCGCAATAAGGAGTCATG

Downstream 100 bases:

>100_bases
CCATTTATCAACCTGAGAGACTCGACATGAAAATATCTTTACGCTCACTATTTGTGGCGTGCCTGATTGCGCCAGTGGCA
TTCACCTACGCCTCCGAACC

Product: putative 4-hydroxyphenylacetate 3-monooxygenase operon regulatory protein

Products: NA

Alternate protein names: Transcriptional Regulator AraC Family; Transcriptional Regulator; Helix-Turn-Helix Domain-Containing Protein; 4-Hydroxyphenylacetate Catabolism Regulatory Protein HpaA; Transcriptional Regulator PobR; Transcriptional Regulatory Protein; Regulator Of 4HPA-Hydroxylase Operon; PobR Regulator; Helix-Turn-Helix- Domain Containing Protein AraC Type; Transcriptional Regulator AraC Family Protein; Transcriptional Regulator Arac Family; Helix-Turn-Helix AraC Type; Transcriptional Regulator Pobr Arac Family Protein; Regulator Of 4hpa-Hydroxylase Operon; Transcriptional Regulator Protein; AraC Protein; AraC Family Regulatory Protein; AraC/XylS Family Transcriptional Regulator; AraC Family Transcriptional Regulatory Protein; Transcriptional Regulatory Protein AraC-Type; AraC Family Transcription Regulator Protein; AraC Family Transcription Regulator; AraC-Family Transcriptional Regulator; Two Component AraC Family Transcriptional Regulator; AraC/XylS Family Transcription Factor; AraC-Type Regulatory Protein

Number of amino acids: Translated: 296; Mature: 295

Protein sequence:

>296_residues
MSSEAIFEHGYENIDLVREYDARYAGEDVHYETFARLANFFGRDMRPHWHDRYFQLHYLVTGRITLQLDEHFYSVRAPLF
VLTPPSVPHTFFTNPDSDGHVLTVRQELIWPLVEKLWPGSGDAAMLQGICLSLEGMEHTLAALNHYWPIISLEFQQNKQG
REILLQSLAQSIFTILLREAPPNDISTCSVRGEMCLFQKFNRLIDENYRQHLMVPEYATMLGMSESRLTELCRRFANQSP
KRLIFERVSREARRLLLYSEQSINQIALDLGYKDPAYFARFFNRMMGCSPTQFRGR

Sequences:

>Translated_296_residues
MSSEAIFEHGYENIDLVREYDARYAGEDVHYETFARLANFFGRDMRPHWHDRYFQLHYLVTGRITLQLDEHFYSVRAPLF
VLTPPSVPHTFFTNPDSDGHVLTVRQELIWPLVEKLWPGSGDAAMLQGICLSLEGMEHTLAALNHYWPIISLEFQQNKQG
REILLQSLAQSIFTILLREAPPNDISTCSVRGEMCLFQKFNRLIDENYRQHLMVPEYATMLGMSESRLTELCRRFANQSP
KRLIFERVSREARRLLLYSEQSINQIALDLGYKDPAYFARFFNRMMGCSPTQFRGR
>Mature_295_residues
SSEAIFEHGYENIDLVREYDARYAGEDVHYETFARLANFFGRDMRPHWHDRYFQLHYLVTGRITLQLDEHFYSVRAPLFV
LTPPSVPHTFFTNPDSDGHVLTVRQELIWPLVEKLWPGSGDAAMLQGICLSLEGMEHTLAALNHYWPIISLEFQQNKQGR
EILLQSLAQSIFTILLREAPPNDISTCSVRGEMCLFQKFNRLIDENYRQHLMVPEYATMLGMSESRLTELCRRFANQSPK
RLIFERVSREARRLLLYSEQSINQIALDLGYKDPAYFARFFNRMMGCSPTQFRGR

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 34641; Mature: 34510

Theoretical pI: Translated: 6.74; Mature: 6.74

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSEAIFEHGYENIDLVREYDARYAGEDVHYETFARLANFFGRDMRPHWHDRYFQLHYLV
CCCCHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEEEE
TGRITLQLDEHFYSVRAPLFVLTPPSVPHTFFTNPDSDGHVLTVRQELIWPLVEKLWPGS
EEEEEEEEHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHCCCC
GDAAMLQGICLSLEGMEHTLAALNHYWPIISLEFQQNKQGREILLQSLAQSIFTILLREA
CCHHHHHHHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCC
PPNDISTCSVRGEMCLFQKFNRLIDENYRQHLMVPEYATMLGMSESRLTELCRRFANQSP
CCCCCCEECCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCHHHHHHHHHHHHCCCH
KRLIFERVSREARRLLLYSEQSINQIALDLGYKDPAYFARFFNRMMGCSPTQFRGR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
SSEAIFEHGYENIDLVREYDARYAGEDVHYETFARLANFFGRDMRPHWHDRYFQLHYLV
CCCHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEEEE
TGRITLQLDEHFYSVRAPLFVLTPPSVPHTFFTNPDSDGHVLTVRQELIWPLVEKLWPGS
EEEEEEEEHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHCCCC
GDAAMLQGICLSLEGMEHTLAALNHYWPIISLEFQQNKQGREILLQSLAQSIFTILLREA
CCHHHHHHHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCC
PPNDISTCSVRGEMCLFQKFNRLIDENYRQHLMVPEYATMLGMSESRLTELCRRFANQSP
CCCCCCEECCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCHHHHHHHHHHHHCCCH
KRLIFERVSREARRLLLYSEQSINQIALDLGYKDPAYFARFFNRMMGCSPTQFRGR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA