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The map label for this gene is ymcB

Identifier: 30062522

GI number: 30062522

Start: 1039813

End: 1040559

Strand: Reverse

Name: ymcB

Synonym: S1054

Alternate gene names: 30062522

Gene position: 1040559-1039813 (Counterclockwise)

Preceding gene: 30062523

Following gene: 30062521

Centisome position: 22.62

GC content: 51.94

Gene sequence:

>747_bases
ATGAATAAATTACAGTCGTATTTCATTGCCAGCGTACTTTACGTAATGACACCCCATGCCTTTGCGCAAGGAACGGTGAC
TATTTATCTGCCTAGCGAACAACAGACACTTTCCGTTGGCCCCGTGGAAAATGTTGTCCAGTTGGTGACACAACCGCAAC
TGCGCGATCGCCTCTGGTGGCCTGGTGCCTTGCTGACCGACTCTGCGGCGAAAGCTAAAGCGCTTAAAGACTACCAACAT
GTCATGGCACAGCTTGCTTCCTGGGAAGCAGAAGCTGACGACGATGTGGCGGCAACGATTAAATCCGTGCGCCAGCAGTT
ACTCAATCTCAATATCACTGGTCGCTTACCGGTCAAACTGGACCCTGATTTTGTACGAGTGGATGAGAACAGCAATCCCC
CGTTGGTCGGGGACTATACGCTCTATACCGTACAGCGTCCGGTGACTATTACTCTGCTGGGTGCGGTTTCTGGGGCTGGG
CAATTGCCCTGGCAGGCAGGCCGTAGCGTTACCGATTATCTGCAAGATCACCCCCGCCTTGCAGGCGCAGACAAGAATAA
CGTTATGGTGATTACGCCTGAGGGTGAGACTGTCGTCGCCCCTGTTGCCCTGTGGAATAAAAGACATGTGGAACCACCGC
CTGGCAGCCAGCTTTGGTTGGGCTTTTCTGCGCATGTACTGCCCGAAAAATATGCTGATTTAAATGACCAGATTGTGTCT
GTTTTAACGCAACGTGTTCCTGACTGA

Upstream 100 bases:

>100_bases
CATTCTGGGTCGATTCGGCTACTGGCCAGGTTCGTCAAAGTCGGCAAATGTTAGGCGCAGGGGTTATTCCCGTAGAAATG
ACGTTTCTTAAACCCGCACC

Downstream 100 bases:

>100_bases
TGAAGAAGAATTCTTATCTTTTAAGCTGCCTGGCCATTGCCGTCTCCAGTGCCTGTCATGCTGAAGTATTAACCTACCCG
GATCCGCTGGGTTCGTCGCA

Product: hypothetical protein

Products: NA

Alternate protein names: Group 4 capsule protein C homolog [H]

Number of amino acids: Translated: 248; Mature: 248

Protein sequence:

>248_residues
MNKLQSYFIASVLYVMTPHAFAQGTVTIYLPSEQQTLSVGPVENVVQLVTQPQLRDRLWWPGALLTDSAAKAKALKDYQH
VMAQLASWEAEADDDVAATIKSVRQQLLNLNITGRLPVKLDPDFVRVDENSNPPLVGDYTLYTVQRPVTITLLGAVSGAG
QLPWQAGRSVTDYLQDHPRLAGADKNNVMVITPEGETVVAPVALWNKRHVEPPPGSQLWLGFSAHVLPEKYADLNDQIVS
VLTQRVPD

Sequences:

>Translated_248_residues
MNKLQSYFIASVLYVMTPHAFAQGTVTIYLPSEQQTLSVGPVENVVQLVTQPQLRDRLWWPGALLTDSAAKAKALKDYQH
VMAQLASWEAEADDDVAATIKSVRQQLLNLNITGRLPVKLDPDFVRVDENSNPPLVGDYTLYTVQRPVTITLLGAVSGAG
QLPWQAGRSVTDYLQDHPRLAGADKNNVMVITPEGETVVAPVALWNKRHVEPPPGSQLWLGFSAHVLPEKYADLNDQIVS
VLTQRVPD
>Mature_248_residues
MNKLQSYFIASVLYVMTPHAFAQGTVTIYLPSEQQTLSVGPVENVVQLVTQPQLRDRLWWPGALLTDSAAKAKALKDYQH
VMAQLASWEAEADDDVAATIKSVRQQLLNLNITGRLPVKLDPDFVRVDENSNPPLVGDYTLYTVQRPVTITLLGAVSGAG
QLPWQAGRSVTDYLQDHPRLAGADKNNVMVITPEGETVVAPVALWNKRHVEPPPGSQLWLGFSAHVLPEKYADLNDQIVS
VLTQRVPD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli yjbG [H]

Homologues:

Organism=Escherichia coli, GI1787220, Length=248, Percent_Identity=99.5967741935484, Blast_Score=501, Evalue=1e-143,
Organism=Escherichia coli, GI1790460, Length=244, Percent_Identity=41.8032786885246, Blast_Score=185, Evalue=3e-48,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010425 [H]

Pfam domain/function: PF06251 DUF1017 [H]

EC number: NA

Molecular weight: Translated: 27326; Mature: 27326

Theoretical pI: Translated: 5.26; Mature: 5.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKLQSYFIASVLYVMTPHAFAQGTVTIYLPSEQQTLSVGPVENVVQLVTQPQLRDRLWW
CCHHHHHHHHHHHHHHCCCHHHCCEEEEEECCCCCEEECCCHHHHHHHHCCCHHHHHCCC
PGALLTDSAAKAKALKDYQHVMAQLASWEAEADDDVAATIKSVRQQLLNLNITGRLPVKL
CCHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEE
DPDFVRVDENSNPPLVGDYTLYTVQRPVTITLLGAVSGAGQLPWQAGRSVTDYLQDHPRL
CCCEEEECCCCCCCEEECEEEEEECCCEEEEEEEECCCCCCCCHHHCCCHHHHHHHCCCC
AGADKNNVMVITPEGETVVAPVALWNKRHVEPPPGSQLWLGFSAHVLPEKYADLNDQIVS
CCCCCCCEEEEECCCCEEEEEEECCCCCCCCCCCCCEEEEEEECCCCCHHHCCHHHHHHH
VLTQRVPD
HHHHHCCC
>Mature Secondary Structure
MNKLQSYFIASVLYVMTPHAFAQGTVTIYLPSEQQTLSVGPVENVVQLVTQPQLRDRLWW
CCHHHHHHHHHHHHHHCCCHHHCCEEEEEECCCCCEEECCCHHHHHHHHCCCHHHHHCCC
PGALLTDSAAKAKALKDYQHVMAQLASWEAEADDDVAATIKSVRQQLLNLNITGRLPVKL
CCHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEE
DPDFVRVDENSNPPLVGDYTLYTVQRPVTITLLGAVSGAGQLPWQAGRSVTDYLQDHPRL
CCCEEEECCCCCCCEEECEEEEEECCCEEEEEEEECCCCCCCCHHHCCCHHHHHHHCCCC
AGADKNNVMVITPEGETVVAPVALWNKRHVEPPPGSQLWLGFSAHVLPEKYADLNDQIVS
CCCCCCCEEEEECCCCEEEEEEECCCCCCCCCCCCCEEEEEEECCCCCHHHCCHHHHHHH
VLTQRVPD
HHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]