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The map label for this gene is ymcA

Identifier: 30062521

GI number: 30062521

Start: 1037717

End: 1039813

Strand: Reverse

Name: ymcA

Synonym: S1053

Alternate gene names: 30062521

Gene position: 1039813-1037717 (Counterclockwise)

Preceding gene: 30062522

Following gene: 30062520

Centisome position: 22.61

GC content: 52.07

Gene sequence:

>2097_bases
ATGAAGAAGAATTCTTATCTTTTAAGCTGCCTGGCCATTGCCGTCTCCAGTGCCTGTCATGCTGAAGTATTAACCTACCC
GGATCCGCTGGGTTCGTCGCAATCAGACTTTGGCGGCACAGGATTGTTGCAGATGCCAAATGCGCGCATCGCACCGGAAG
GTGAATTCAGCGTCAACTACCGGGATAACGATCAATACCGGTTCTACTCCACCTCCGTGGCGCTGTTCCCATGGCTGGAA
GGCACCATTCGTTATACGGATGTGCGCACACGCAAATATAGCCAGTGGGAAGATTTCAGCGGCGATCAGTCATACAAAGA
CAAATCATTCGATTTTAAACTTCGCCTGTGGGAAGAAGGTTACTGGCTACCGCAAGTGGCGTTTGGTAAACGTGATATTG
CTGGTACGGGTTTGTTTGACGGTGAATATCTGGTGGCCAGCAAGCAAGCGGGGCCATTTGATTTCACCCTCGGGATGGCA
TGGGGCTACGCCGGTAATGCGGGCAATATTACCAACCCGTTTTGCCGGGTGAGCGATAAATATTGTCATCGCGCAGAGTC
TCACGATGCGGGCGATATCAGCTTTAGCGATATCTTTCGTGGCCCGGCTTCCATCTTTGGCGGCATTGAGTATCAAACGC
CGTGGAATCCCCTGCGTCTGAAACTCGAATACGACGGCAACAATTACCAGAATGATTTCGCTGGCAAACTGCCTCAGGCA
AGCCATTTCAACGTCGGTGCAGTTTATCGCGCTGCCAGCTGGGCAGACCTCAACCTCAGTTATGAACGCGGAAACACGTT
GATGTTTGGTTTCACTTTACGGACCAATTTCAACGATCTGCGCCCTGCCCTACGCGATACGCCAAAACCGGCCTGGCAGC
CTGCGCCAGAGTCTGAAGGTTTGCAGTACACCACGGTAGCAAACCAACTTACCGCCCTGAAGTATAACGCGGGCTTTGAC
GCGCCAGAAATTCAGCTACGCGATAAGACGCTGTATATGTCTGGTCAGCAATACAAATACCGTGACTCTCGCGAAGCGGT
CGATCGTGCCAACCGGATTCTGGTGAATAACCTGCCGCAAGGCGTTGAGAAGATTAGCGTGACGCAAAAGCGCGAGCATA
TGGCGATGGTGACTACCGAAACCGACGTAGCCAGCCTGCGCAAACAGCTGGCCGGCACAGCGCCTGGTAAATCAGAGCAA
CTGCAACAACAACGTGTTGAAGCAGAAGATCTTTCTGCCTTTGGTCGGTGCTACCGTATTCGTGAAGATCGCTTTAGCTA
CTCTTTCAACCCAACACTTTCACAGTCGCTGGGCGGCCCGGAAGATTTCTATATGTTCCAGCTGGGGCTGATGTCCAGCG
CCCGCTACTGGTTTACCGACCACCTGCTGCTTGATGACGGTATTTTCACCAATATTTACAACAACTACGACAAGTTTAAG
TCTTCACTGTTACCCGCGGACTCTACCCTGCCCCGCGTGCGCACGCATATCCGTGATTACGTTCGCAATGACGTTTATCT
CAACAACTTGCAAGCGAATTACTTTGCCGACTTAGGCAATGGTTTCTATGGCCAGGTGTATGGCGGTTATCTGGAAACGA
TGTATGCCGGTGTCGGTTCCGAGCTTCTTTATCGCCCGCTAGATGCCAGCTGGGCGCTGGGTGTGGACGTTAACTACGTG
AAGCAGCGTGACTGGGACAACATGATGCGCTTCACCGATTATTCCACGCCCACAGGTTTCGTGACGGCTTACTGGAACCC
GCCGACGCTCAATGGCGTACTGATGAAACTTAGCGTTGGGCAATATCTGGCAAAAGATAAAGGCGCAACGATCGACGTCG
CCAAACTCTTTGACAGCGGCGTGGCGGTAGGGGTATGGGCGGCAATCAGTAACGTATCTAAAGATGACTACGGCGAAGGC
GGCTTTAGTAAAGGTTTTTATATCTCGATTCCGTTCGACTTGATGACCATTGGACCTAACCGCAACCGCGCGGTGGTTTC
GTGGACACCATTGACGCGTGATGGTGGACAAATGCTGTCACGCAAATACCAGCTCGATCCAATGACGGCAGAGCGAGAAG
TACCGGTTGGACAATAA

Upstream 100 bases:

>100_bases
GCCAGCTTTGGTTGGGCTTTTCTGCGCATGTACTGCCCGAAAAATATGCTGATTTAAATGACCAGATTGTGTCTGTTTTA
ACGCAACGTGTTCCTGACTG

Downstream 100 bases:

>100_bases
CCTGACGTAATTCATAACATTACATTGACTGATAAATATAAACCAATGAAAAAGAACATTTTTAAGTTTTCGGTACTGAC
ATTGGCTGTTCTGTCTTTGA

Product: hypothetical protein

Products: NA

Alternate protein names: Group 4 capsule protein D homolog [H]

Number of amino acids: Translated: 698; Mature: 698

Protein sequence:

>698_residues
MKKNSYLLSCLAIAVSSACHAEVLTYPDPLGSSQSDFGGTGLLQMPNARIAPEGEFSVNYRDNDQYRFYSTSVALFPWLE
GTIRYTDVRTRKYSQWEDFSGDQSYKDKSFDFKLRLWEEGYWLPQVAFGKRDIAGTGLFDGEYLVASKQAGPFDFTLGMA
WGYAGNAGNITNPFCRVSDKYCHRAESHDAGDISFSDIFRGPASIFGGIEYQTPWNPLRLKLEYDGNNYQNDFAGKLPQA
SHFNVGAVYRAASWADLNLSYERGNTLMFGFTLRTNFNDLRPALRDTPKPAWQPAPESEGLQYTTVANQLTALKYNAGFD
APEIQLRDKTLYMSGQQYKYRDSREAVDRANRILVNNLPQGVEKISVTQKREHMAMVTTETDVASLRKQLAGTAPGKSEQ
LQQQRVEAEDLSAFGRCYRIREDRFSYSFNPTLSQSLGGPEDFYMFQLGLMSSARYWFTDHLLLDDGIFTNIYNNYDKFK
SSLLPADSTLPRVRTHIRDYVRNDVYLNNLQANYFADLGNGFYGQVYGGYLETMYAGVGSELLYRPLDASWALGVDVNYV
KQRDWDNMMRFTDYSTPTGFVTAYWNPPTLNGVLMKLSVGQYLAKDKGATIDVAKLFDSGVAVGVWAAISNVSKDDYGEG
GFSKGFYISIPFDLMTIGPNRNRAVVSWTPLTRDGGQMLSRKYQLDPMTAEREVPVGQ

Sequences:

>Translated_698_residues
MKKNSYLLSCLAIAVSSACHAEVLTYPDPLGSSQSDFGGTGLLQMPNARIAPEGEFSVNYRDNDQYRFYSTSVALFPWLE
GTIRYTDVRTRKYSQWEDFSGDQSYKDKSFDFKLRLWEEGYWLPQVAFGKRDIAGTGLFDGEYLVASKQAGPFDFTLGMA
WGYAGNAGNITNPFCRVSDKYCHRAESHDAGDISFSDIFRGPASIFGGIEYQTPWNPLRLKLEYDGNNYQNDFAGKLPQA
SHFNVGAVYRAASWADLNLSYERGNTLMFGFTLRTNFNDLRPALRDTPKPAWQPAPESEGLQYTTVANQLTALKYNAGFD
APEIQLRDKTLYMSGQQYKYRDSREAVDRANRILVNNLPQGVEKISVTQKREHMAMVTTETDVASLRKQLAGTAPGKSEQ
LQQQRVEAEDLSAFGRCYRIREDRFSYSFNPTLSQSLGGPEDFYMFQLGLMSSARYWFTDHLLLDDGIFTNIYNNYDKFK
SSLLPADSTLPRVRTHIRDYVRNDVYLNNLQANYFADLGNGFYGQVYGGYLETMYAGVGSELLYRPLDASWALGVDVNYV
KQRDWDNMMRFTDYSTPTGFVTAYWNPPTLNGVLMKLSVGQYLAKDKGATIDVAKLFDSGVAVGVWAAISNVSKDDYGEG
GFSKGFYISIPFDLMTIGPNRNRAVVSWTPLTRDGGQMLSRKYQLDPMTAEREVPVGQ
>Mature_698_residues
MKKNSYLLSCLAIAVSSACHAEVLTYPDPLGSSQSDFGGTGLLQMPNARIAPEGEFSVNYRDNDQYRFYSTSVALFPWLE
GTIRYTDVRTRKYSQWEDFSGDQSYKDKSFDFKLRLWEEGYWLPQVAFGKRDIAGTGLFDGEYLVASKQAGPFDFTLGMA
WGYAGNAGNITNPFCRVSDKYCHRAESHDAGDISFSDIFRGPASIFGGIEYQTPWNPLRLKLEYDGNNYQNDFAGKLPQA
SHFNVGAVYRAASWADLNLSYERGNTLMFGFTLRTNFNDLRPALRDTPKPAWQPAPESEGLQYTTVANQLTALKYNAGFD
APEIQLRDKTLYMSGQQYKYRDSREAVDRANRILVNNLPQGVEKISVTQKREHMAMVTTETDVASLRKQLAGTAPGKSEQ
LQQQRVEAEDLSAFGRCYRIREDRFSYSFNPTLSQSLGGPEDFYMFQLGLMSSARYWFTDHLLLDDGIFTNIYNNYDKFK
SSLLPADSTLPRVRTHIRDYVRNDVYLNNLQANYFADLGNGFYGQVYGGYLETMYAGVGSELLYRPLDASWALGVDVNYV
KQRDWDNMMRFTDYSTPTGFVTAYWNPPTLNGVLMKLSVGQYLAKDKGATIDVAKLFDSGVAVGVWAAISNVSKDDYGEG
GFSKGFYISIPFDLMTIGPNRNRAVVSWTPLTRDGGQMLSRKYQLDPMTAEREVPVGQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787219, Length=698, Percent_Identity=98.8538681948424, Blast_Score=1424, Evalue=0.0,
Organism=Escherichia coli, GI1790461, Length=696, Percent_Identity=63.7931034482759, Blast_Score=936, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010344 [H]

Pfam domain/function: PF06082 DUF940 [H]

EC number: NA

Molecular weight: Translated: 78739; Mature: 78739

Theoretical pI: Translated: 5.61; Mature: 5.61

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKNSYLLSCLAIAVSSACHAEVLTYPDPLGSSQSDFGGTGLLQMPNARIAPEGEFSVNY
CCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCEEEEE
RDNDQYRFYSTSVALFPWLEGTIRYTDVRTRKYSQWEDFSGDQSYKDKSFDFKLRLWEEG
CCCCCEEEEECCEEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEECCC
YWLPQVAFGKRDIAGTGLFDGEYLVASKQAGPFDFTLGMAWGYAGNAGNITNPFCRVSDK
CCCCEECCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEEEECCCCCCCCCCCCHHHCCHH
YCHRAESHDAGDISFSDIFRGPASIFGGIEYQTPWNPLRLKLEYDGNNYQNDFAGKLPQA
HHHHCCCCCCCCCCHHHHHCCHHHHHCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCC
SHFNVGAVYRAASWADLNLSYERGNTLMFGFTLRTNFNDLRPALRDTPKPAWQPAPESEG
CCCCCCEEEEECCEEEEEEEEECCCEEEEEEEEECCCHHHHHHHHCCCCCCCCCCCCCCC
LQYTTVANQLTALKYNAGFDAPEIQLRDKTLYMSGQQYKYRDSREAVDRANRILVNNLPQ
EEEEEHHCCEEEEEECCCCCCCCEEEECEEEEECCCCCCCCCHHHHHHHHCEEEECCCCH
GVEKISVTQKREHMAMVTTETDVASLRKQLAGTAPGKSEQLQQQRVEAEDLSAFGRCYRI
HHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHHHHHHEE
REDRFSYSFNPTLSQSLGGPEDFYMFQLGLMSSARYWFTDHLLLDDGIFTNIYNNYDKFK
HHCCCCEECCCCHHHHCCCCCCEEEEEEHHHCCCCEEEEEEEEECCCHHHHHHHHHHHHH
SSLLPADSTLPRVRTHIRDYVRNDVYLNNLQANYFADLGNGFYGQVYGGYLETMYAGVGS
HHCCCCCCCHHHHHHHHHHHHHCCEEEECCCCHHHHHCCCCEEEHHHHHHHHHHHHCCCH
ELLYRPLDASWALGVDVNYVKQRDWDNMMRFTDYSTPTGFVTAYWNPPTLNGVLMKLSVG
HHHCCCCCCCEEECCCCHHHHHCCHHHHHHEECCCCCCCEEEEEECCCCCCCEEEEEEHH
QYLAKDKGATIDVAKLFDSGVAVGVWAAISNVSKDDYGEGGFSKGFYISIPFDLMTIGPN
HHHHCCCCCEEEHHHHHCCCCCEEHHHHHHCCCCCCCCCCCCCCCEEEEECCEEEEECCC
RNRAVVSWTPLTRDGGQMLSRKYQLDPMTAEREVPVGQ
CCEEEEEECCCCCCCHHHHHHEECCCCCCCCCCCCCCC
>Mature Secondary Structure
MKKNSYLLSCLAIAVSSACHAEVLTYPDPLGSSQSDFGGTGLLQMPNARIAPEGEFSVNY
CCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCEEEEE
RDNDQYRFYSTSVALFPWLEGTIRYTDVRTRKYSQWEDFSGDQSYKDKSFDFKLRLWEEG
CCCCCEEEEECCEEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEECCC
YWLPQVAFGKRDIAGTGLFDGEYLVASKQAGPFDFTLGMAWGYAGNAGNITNPFCRVSDK
CCCCEECCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEEEECCCCCCCCCCCCHHHCCHH
YCHRAESHDAGDISFSDIFRGPASIFGGIEYQTPWNPLRLKLEYDGNNYQNDFAGKLPQA
HHHHCCCCCCCCCCHHHHHCCHHHHHCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCC
SHFNVGAVYRAASWADLNLSYERGNTLMFGFTLRTNFNDLRPALRDTPKPAWQPAPESEG
CCCCCCEEEEECCEEEEEEEEECCCEEEEEEEEECCCHHHHHHHHCCCCCCCCCCCCCCC
LQYTTVANQLTALKYNAGFDAPEIQLRDKTLYMSGQQYKYRDSREAVDRANRILVNNLPQ
EEEEEHHCCEEEEEECCCCCCCCEEEECEEEEECCCCCCCCCHHHHHHHHCEEEECCCCH
GVEKISVTQKREHMAMVTTETDVASLRKQLAGTAPGKSEQLQQQRVEAEDLSAFGRCYRI
HHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHHHHHHEE
REDRFSYSFNPTLSQSLGGPEDFYMFQLGLMSSARYWFTDHLLLDDGIFTNIYNNYDKFK
HHCCCCEECCCCHHHHCCCCCCEEEEEEHHHCCCCEEEEEEEEECCCHHHHHHHHHHHHH
SSLLPADSTLPRVRTHIRDYVRNDVYLNNLQANYFADLGNGFYGQVYGGYLETMYAGVGS
HHCCCCCCCHHHHHHHHHHHHHCCEEEECCCCHHHHHCCCCEEEHHHHHHHHHHHHCCCH
ELLYRPLDASWALGVDVNYVKQRDWDNMMRFTDYSTPTGFVTAYWNPPTLNGVLMKLSVG
HHHCCCCCCCEEECCCCHHHHHCCHHHHHHEECCCCCCCEEEEEECCCCCCCEEEEEEHH
QYLAKDKGATIDVAKLFDSGVAVGVWAAISNVSKDDYGEGGFSKGFYISIPFDLMTIGPN
HHHHCCCCCEEEHHHHHCCCCCEEHHHHHHCCCCCCCCCCCCCCCEEEEECCEEEEECCC
RNRAVVSWTPLTRDGGQMLSRKYQLDPMTAEREVPVGQ
CCEEEEEECCCCCCCHHHHHHEECCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]