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The map label for this gene is ymcC

Identifier: 30062523

GI number: 30062523

Start: 1040556

End: 1041200

Strand: Reverse

Name: ymcC

Synonym: S1055

Alternate gene names: 30062523

Gene position: 1041200-1040556 (Counterclockwise)

Preceding gene: 30062524

Following gene: 30062522

Centisome position: 22.64

GC content: 47.91

Gene sequence:

>645_bases
GTGCGCCCTCTTATTTTATCGATTTTCGCACTATTTCTTGCGGGATGTACGCACAGCCAGCAAAGTATGGTCGATACATT
TCGCGCCAGCCTTTTCGATAATCAGGATATCACTGTAGCGGCTCAGCAGATCCAGGCGTTGCCTTATTCCACGATGTATT
TACGCCTTAATGAAGGGCAACGAATCTTTGTGGTACTGGGATATATAGAACAAGAACAAAGCAAATGGTTATCCCAGGAT
AACGCCATGCTGGTTACCCACAATGGACGTCTTTTAAAGACCGTCAAACTTAATAATAATCTGCTGGAAGTGACAAATCC
CGGGCGGGCCCCTCTGCGTAACGCGCTGGCAATAAAAGATGGCAGCCGCTGGACGCGCGATATTCTCTGGAGTGAAGACA
ACCATTTTCGCTCTGCGACCCTAAGTTCTACTTTTTCCTTTGCTGGATTAGAGACGCTGAATATTGCGGGTCACAATGTG
CTGTGTAATGTCTGGCAGGAAGAGGTGACTTCCACGCTGCCAGAAAAACAGTGGCAAAACACATTCTGGGTCGATTCGGC
TACTGGCCAGGTTCGTCAAAGTCGGCAAATGTTAGGCGCAGGGGTTATTCCCGTAGAAATGACGTTTCTTAAACCCGCAC
CATGA

Upstream 100 bases:

>100_bases
TTAAACGCGTCGAAATTCAAGTTAAATAATACCCGGTTGCGATATTCGTACCGGGCTTTAGAGATTTGCATTTTTTTAAT
TAACCTTTCAAGGATTAAAG

Downstream 100 bases:

>100_bases
ATAAATTACAGTCGTATTTCATTGCCAGCGTACTTTACGTAATGACACCCCATGCCTTTGCGCAAGGAACGGTGACTATT
TATCTGCCTAGCGAACAACA

Product: putative regulator

Products: NA

Alternate protein names: Group 4 capsule protein B homolog [H]

Number of amino acids: Translated: 214; Mature: 214

Protein sequence:

>214_residues
MRPLILSIFALFLAGCTHSQQSMVDTFRASLFDNQDITVAAQQIQALPYSTMYLRLNEGQRIFVVLGYIEQEQSKWLSQD
NAMLVTHNGRLLKTVKLNNNLLEVTNPGRAPLRNALAIKDGSRWTRDILWSEDNHFRSATLSSTFSFAGLETLNIAGHNV
LCNVWQEEVTSTLPEKQWQNTFWVDSATGQVRQSRQMLGAGVIPVEMTFLKPAP

Sequences:

>Translated_214_residues
MRPLILSIFALFLAGCTHSQQSMVDTFRASLFDNQDITVAAQQIQALPYSTMYLRLNEGQRIFVVLGYIEQEQSKWLSQD
NAMLVTHNGRLLKTVKLNNNLLEVTNPGRAPLRNALAIKDGSRWTRDILWSEDNHFRSATLSSTFSFAGLETLNIAGHNV
LCNVWQEEVTSTLPEKQWQNTFWVDSATGQVRQSRQMLGAGVIPVEMTFLKPAP
>Mature_214_residues
MRPLILSIFALFLAGCTHSQQSMVDTFRASLFDNQDITVAAQQIQALPYSTMYLRLNEGQRIFVVLGYIEQEQSKWLSQD
NAMLVTHNGRLLKTVKLNNNLLEVTNPGRAPLRNALAIKDGSRWTRDILWSEDNHFRSATLSSTFSFAGLETLNIAGHNV
LCNVWQEEVTSTLPEKQWQNTFWVDSATGQVRQSRQMLGAGVIPVEMTFLKPAP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli yjbF [H]

Homologues:

Organism=Escherichia coli, GI1787221, Length=214, Percent_Identity=97.196261682243, Blast_Score=429, Evalue=1e-122,
Organism=Escherichia coli, GI87082360, Length=212, Percent_Identity=37.7358490566038, Blast_Score=155, Evalue=2e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR021308 [H]

Pfam domain/function: PF11102 DUF2886 [H]

EC number: NA

Molecular weight: Translated: 24156; Mature: 24156

Theoretical pI: Translated: 7.58; Mature: 7.58

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRPLILSIFALFLAGCTHSQQSMVDTFRASLFDNQDITVAAQQIQALPYSTMYLRLNEGQ
CCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCEEHHHHHHHHCCCEEEEEEECCCC
RIFVVLGYIEQEQSKWLSQDNAMLVTHNGRLLKTVKLNNNLLEVTNPGRAPLRNALAIKD
EEEEEEEEHHHHHHHHHCCCCCEEEEECCEEEEEEEECCCEEEECCCCCCCCCCEEEECC
GSRWTRDILWSEDNHFRSATLSSTFSFAGLETLNIAGHNVLCNVWQEEVTSTLPEKQWQN
CCCHHHHHCCCCCCCEEEHHHHCCHHHCCCEEEEECCCHHEEHHHHHHHHHHCCHHHHCC
TFWVDSATGQVRQSRQMLGAGVIPVEMTFLKPAP
EEEEECCCHHHHHHHHHHCCCCCEEEEEEECCCC
>Mature Secondary Structure
MRPLILSIFALFLAGCTHSQQSMVDTFRASLFDNQDITVAAQQIQALPYSTMYLRLNEGQ
CCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCEEHHHHHHHHCCCEEEEEEECCCC
RIFVVLGYIEQEQSKWLSQDNAMLVTHNGRLLKTVKLNNNLLEVTNPGRAPLRNALAIKD
EEEEEEEEHHHHHHHHHCCCCCEEEEECCEEEEEEEECCCEEEECCCCCCCCCCEEEECC
GSRWTRDILWSEDNHFRSATLSSTFSFAGLETLNIAGHNVLCNVWQEEVTSTLPEKQWQN
CCCHHHHHCCCCCCCEEEHHHHCCHHHCCCEEEEECCCHHEEHHHHHHHHHHCCHHHHCC
TFWVDSATGQVRQSRQMLGAGVIPVEMTFLKPAP
EEEEECCCHHHHHHHHHHCCCCCEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]