Click here to switch to the map view.

The map label for this gene is xerC [H]

Identifier: 29349957

GI number: 29349957

Start: 5968988

End: 5970106

Strand: Reverse

Name: xerC [H]

Synonym: BT_4549

Alternate gene names: 29349957

Gene position: 5970106-5968988 (Counterclockwise)

Preceding gene: 29349958

Following gene: 29349956

Centisome position: 95.36

GC content: 43.61

Gene sequence:

>1119_bases
ATGCACGAATGTAAAACTGTAACATTGAGGACAAGACCTCTAAAGAAAAACATGTTGTCGTTCTATCTGGATTATTATCC
CGGTTATCGCGACAAAGAAAGTATGAAGGTAATCCGTCATGAATCTTTGGGCATCTACATCTATGCCGAACCAAAGAACC
AACGGGAACAGAACTTTAATGCCGTCATGTCGGAAAAAGCAGAAGCTATCCGATGCCGACGCTTTGAATCCATCGTAAAT
GAGCGGTACGATTTCTTTGACAAGAGCAAGATGAAAGGAGATTTTCTTGCCTATTATAAGAAGACACTCCGCAAGCACGA
CCAGAAATGGGAGTTCGTATATCTGCATTTTTTCAATTTCGTGGGTGGAAAATGTTCATTCGAGGAAATCGATGTGGACT
TATGCAACAAGTTCAGAGAGTATCTGCTTAATGCGAAACAGCTTAGACGTCCTGAGCGTCCCATATCACGCAATTCGGCT
GTGGGCTACTGGTCCACATTCAGAGGATTTCTCAAAATACTCTATCGCAACAAGTTAATTCACTCCAATGTAAATGATTT
CTTGGACAAGATAGAGCCGGAAGATGTAGTGAAAGACTACCTAAGCGTAGATGAACTGTACAGATTGGCAGAAACACCTT
GCAAAATACCGGTTCTGAAAACAGCCTCGTTATTCTCTTGTCTGACAAGTCTGAGAATCAGCGATATTCTCACATTGCGA
TGGGAAGAAATCGTGGACTTTGCTGCCGGAGGAAAATGCGTCCACACCGTCACTCAAAAGACAAAGACAGAAGACATCAT
CCCCATTAGTGACGAAGCCTTGCAATTGATTGGTTATTCTCCCGAAAAGACAGGGCTGGTATTCAAAGGATTGAAAAGAT
GCTGGACGCAATACCCCATGAAAGAGTGGATCCGAGCCGCAGGTATCACCAAAAACATCACCTTCCACTCATATCGAAGG
ACATTCGCCACTTTACAGGCTGCTGCCGGAACAGACATCCGAACCATCCAAAGCATCATGGCACACAAGAGCATCACCAC
AACCCAACGATACATGAAAGTGGTGGATAGCAACAAGCGAAAAGCCAGCAACAAAATTTCCTTGATCCGTAAGGATTAA

Upstream 100 bases:

>100_bases
CCGCACAGACAAGAATCATTTTCAGCAATGGCAGCCATCAGCATTGTTTCATTGTATTGGTTTGCAACAAATTAATCACC
AATTATAAAAACATATCATT

Downstream 100 bases:

>100_bases
CGGTCATTATTACCTCTTTTATATGGTTAGAGTATGATTTTTGAGTATGATTCATATTCTAACCATAATTATTTGTGAAT
ATCAGTCCAATAACCATTAG

Product: integrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 372; Mature: 372

Protein sequence:

>372_residues
MHECKTVTLRTRPLKKNMLSFYLDYYPGYRDKESMKVIRHESLGIYIYAEPKNQREQNFNAVMSEKAEAIRCRRFESIVN
ERYDFFDKSKMKGDFLAYYKKTLRKHDQKWEFVYLHFFNFVGGKCSFEEIDVDLCNKFREYLLNAKQLRRPERPISRNSA
VGYWSTFRGFLKILYRNKLIHSNVNDFLDKIEPEDVVKDYLSVDELYRLAETPCKIPVLKTASLFSCLTSLRISDILTLR
WEEIVDFAAGGKCVHTVTQKTKTEDIIPISDEALQLIGYSPEKTGLVFKGLKRCWTQYPMKEWIRAAGITKNITFHSYRR
TFATLQAAAGTDIRTIQSIMAHKSITTTQRYMKVVDSNKRKASNKISLIRKD

Sequences:

>Translated_372_residues
MHECKTVTLRTRPLKKNMLSFYLDYYPGYRDKESMKVIRHESLGIYIYAEPKNQREQNFNAVMSEKAEAIRCRRFESIVN
ERYDFFDKSKMKGDFLAYYKKTLRKHDQKWEFVYLHFFNFVGGKCSFEEIDVDLCNKFREYLLNAKQLRRPERPISRNSA
VGYWSTFRGFLKILYRNKLIHSNVNDFLDKIEPEDVVKDYLSVDELYRLAETPCKIPVLKTASLFSCLTSLRISDILTLR
WEEIVDFAAGGKCVHTVTQKTKTEDIIPISDEALQLIGYSPEKTGLVFKGLKRCWTQYPMKEWIRAAGITKNITFHSYRR
TFATLQAAAGTDIRTIQSIMAHKSITTTQRYMKVVDSNKRKASNKISLIRKD
>Mature_372_residues
MHECKTVTLRTRPLKKNMLSFYLDYYPGYRDKESMKVIRHESLGIYIYAEPKNQREQNFNAVMSEKAEAIRCRRFESIVN
ERYDFFDKSKMKGDFLAYYKKTLRKHDQKWEFVYLHFFNFVGGKCSFEEIDVDLCNKFREYLLNAKQLRRPERPISRNSA
VGYWSTFRGFLKILYRNKLIHSNVNDFLDKIEPEDVVKDYLSVDELYRLAETPCKIPVLKTASLFSCLTSLRISDILTLR
WEEIVDFAAGGKCVHTVTQKTKTEDIIPISDEALQLIGYSPEKTGLVFKGLKRCWTQYPMKEWIRAAGITKNITFHSYRR
TFATLQAAAGTDIRTIQSIMAHKSITTTQRYMKVVDSNKRKASNKISLIRKD

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG4974

COG function: function code L; Site-specific recombinase XerD

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 43726; Mature: 43726

Theoretical pI: Translated: 9.94; Mature: 9.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHECKTVTLRTRPLKKNMLSFYLDYYPGYRDKESMKVIRHESLGIYIYAEPKNQREQNFN
CCCCEEEEEECCCHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCEEEEEECCCCCHHHHHH
AVMSEKAEAIRCRRFESIVNERYDFFDKSKMKGDFLAYYKKTLRKHDQKWEFVYLHFFNF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEEHHHH
VGGKCSFEEIDVDLCNKFREYLLNAKQLRRPERPISRNSAVGYWSTFRGFLKILYRNKLI
CCCCCCHHHHCHHHHHHHHHHHHCHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
HSNVNDFLDKIEPEDVVKDYLSVDELYRLAETPCKIPVLKTASLFSCLTSLRISDILTLR
HCCHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
WEEIVDFAAGGKCVHTVTQKTKTEDIIPISDEALQLIGYSPEKTGLVFKGLKRCWTQYPM
HHHHHHHHCCCHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHCCH
KEWIRAAGITKNITFHSYRRTFATLQAAAGTDIRTIQSIMAHKSITTTQRYMKVVDSNKR
HHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
KASNKISLIRKD
HCCCCCEEEECC
>Mature Secondary Structure
MHECKTVTLRTRPLKKNMLSFYLDYYPGYRDKESMKVIRHESLGIYIYAEPKNQREQNFN
CCCCEEEEEECCCHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCEEEEEECCCCCHHHHHH
AVMSEKAEAIRCRRFESIVNERYDFFDKSKMKGDFLAYYKKTLRKHDQKWEFVYLHFFNF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEEHHHH
VGGKCSFEEIDVDLCNKFREYLLNAKQLRRPERPISRNSAVGYWSTFRGFLKILYRNKLI
CCCCCCHHHHCHHHHHHHHHHHHCHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
HSNVNDFLDKIEPEDVVKDYLSVDELYRLAETPCKIPVLKTASLFSCLTSLRISDILTLR
HCCHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
WEEIVDFAAGGKCVHTVTQKTKTEDIIPISDEALQLIGYSPEKTGLVFKGLKRCWTQYPM
HHHHHHHHCCCHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHCCH
KEWIRAAGITKNITFHSYRRTFATLQAAAGTDIRTIQSIMAHKSITTTQRYMKVVDSNKR
HHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
KASNKISLIRKD
HCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA