| Definition | Bacteroides thetaiotaomicron VPI-5482 chromosome, complete genome. |
|---|---|
| Accession | NC_004663 |
| Length | 6,260,361 |
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The map label for this gene is 29349958
Identifier: 29349958
GI number: 29349958
Start: 5970215
End: 5971675
Strand: Reverse
Name: 29349958
Synonym: BT_4550
Alternate gene names: NA
Gene position: 5971675-5970215 (Counterclockwise)
Preceding gene: 29349959
Following gene: 29349957
Centisome position: 95.39
GC content: 44.01
Gene sequence:
>1461_bases ATGGAAATCCAAAGAAAATGCCAGTGGTGCGGCAAACCATTTATAGCACACACGATGGTAACACGCTATTGCAGCAAATC GTGCAATGAAAAAGCGTACAAAGAGAAGAAGCGGAAGCAGAGGTTACAGGAATACGAGGAACGGCAAAATGAGCAGCCCA TGCAGGAAGTCGGTATCGTAGGAAGCAAGTTGTATCTCTCCCCTGCCGAAACCGCAACCCTTTTAGGTATTAGCCGTGCG ACCATCTATCGGCACATGGCTACCGGTATCATTCGGGCACTGCAACTTCGCGGGCGTACCATTATCCGCAAGTCGGACAT TGAAAAAATGTTTGATGATGCACCCGGTTATAAGAAACGGAGTTATGGAAGAAAACAGACCGTTCTTTATTACACTACCA ATGAGATTCTGGAGAAGTTCCAAATTCAGAAGAAAACACTGTATCGTCGATGCAAGTTATACAACATCCCTAAGGTTGAA GAAGGCAATCGTGTGTTCTACAACCGCACCCTTATAGACAAGTATTTTGCCGACCTTGCCGAAGAAATCAATCCGGCCTG TTATTATACCCCGGAGCAGGTCATGGAAAAGTACGGTATGAGCCGTAATGCTGTTGCTACCTTTGCCCTGCGGTACAATA TTCCCCGAATCAACCGCCACCACGAGGTGTATTATTCCCGTGCCCATATAGACGCGATTAAGGAAAAGCAGGAGAAGCTG AATCCCGACTATTATACCTACGATGAAATCACCGAGAAATACGGACTTACTAAAATTAATATCAGCTACTATGTCAACAA ATACGACATCAAACGGTTCAAGCAAGGAAGCCGGACAATGGTGCAACGTTCCGAGTTTGACAAAGTCTATATAGAGCATC GTGATGGAACATATACACCCAAGAAACGGGAAAAGAAAAGCGACCTGCCGAAAGAGACCTTTGTAATCCCTGAAGGTTAT TACTCATCCGAGCAAATTGCGGCAACTTATCATATGAACAGGAAAACCATTTGCAAGCTATGCCGTGAAAACGACATTCC TAAAATCAGTCATGGTGGGTTCAATTATTACGAGCAACTGTCAGTTGACAGATTCTTCGCCAAATACAAGGCTGCAGACA ATATAAAGGAATGGATTAGTGCGGAACAAATGGAGGAAATCTATGGTATGAGCAAAGATGCCAGATGCTCATTTGTACAT CGCCATAAAATCCCGTCCCGTGTTGTTTATGGCAAAGTCCAATATTCAAAAGACCATATCGACATTATCAAAAGCGGAGG TTTCGACCAACGGGAAATGTATTACAGCGTAGCCGAAGCAATGGAAAAATATAGTCTCCGCAGGGATGATGTCTACAATT ATGCGAGGTATAACAAGATACGGAAGATGCATCACGGAAAGCCCATGTTCCTGTTGAAAGAGGATTTTGACAAGGTGATG GCTGAAAAATCCGGTATCTGA
Upstream 100 bases:
>100_bases GAGAATGAGCGGAACCGCTATAGAAGACACAGTGTGAGACGCTATGAGAAATTGTGAGACGCATTGAGACAGAATAGGCG AAATTAAAGGCGACTAATAT
Downstream 100 bases:
>100_bases GAATTATTCCGCACAGACAAGAATCATTTTCAGCAATGGCAGCCATCAGCATTGTTTCATTGTATTGGTTTGCAACAAAT TAATCACCAATTATAAAAAC
Product: putative transposase
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 486; Mature: 486
Protein sequence:
>486_residues MEIQRKCQWCGKPFIAHTMVTRYCSKSCNEKAYKEKKRKQRLQEYEERQNEQPMQEVGIVGSKLYLSPAETATLLGISRA TIYRHMATGIIRALQLRGRTIIRKSDIEKMFDDAPGYKKRSYGRKQTVLYYTTNEILEKFQIQKKTLYRRCKLYNIPKVE EGNRVFYNRTLIDKYFADLAEEINPACYYTPEQVMEKYGMSRNAVATFALRYNIPRINRHHEVYYSRAHIDAIKEKQEKL NPDYYTYDEITEKYGLTKINISYYVNKYDIKRFKQGSRTMVQRSEFDKVYIEHRDGTYTPKKREKKSDLPKETFVIPEGY YSSEQIAATYHMNRKTICKLCRENDIPKISHGGFNYYEQLSVDRFFAKYKAADNIKEWISAEQMEEIYGMSKDARCSFVH RHKIPSRVVYGKVQYSKDHIDIIKSGGFDQREMYYSVAEAMEKYSLRRDDVYNYARYNKIRKMHHGKPMFLLKEDFDKVM AEKSGI
Sequences:
>Translated_486_residues MEIQRKCQWCGKPFIAHTMVTRYCSKSCNEKAYKEKKRKQRLQEYEERQNEQPMQEVGIVGSKLYLSPAETATLLGISRA TIYRHMATGIIRALQLRGRTIIRKSDIEKMFDDAPGYKKRSYGRKQTVLYYTTNEILEKFQIQKKTLYRRCKLYNIPKVE EGNRVFYNRTLIDKYFADLAEEINPACYYTPEQVMEKYGMSRNAVATFALRYNIPRINRHHEVYYSRAHIDAIKEKQEKL NPDYYTYDEITEKYGLTKINISYYVNKYDIKRFKQGSRTMVQRSEFDKVYIEHRDGTYTPKKREKKSDLPKETFVIPEGY YSSEQIAATYHMNRKTICKLCRENDIPKISHGGFNYYEQLSVDRFFAKYKAADNIKEWISAEQMEEIYGMSKDARCSFVH RHKIPSRVVYGKVQYSKDHIDIIKSGGFDQREMYYSVAEAMEKYSLRRDDVYNYARYNKIRKMHHGKPMFLLKEDFDKVM AEKSGI >Mature_486_residues MEIQRKCQWCGKPFIAHTMVTRYCSKSCNEKAYKEKKRKQRLQEYEERQNEQPMQEVGIVGSKLYLSPAETATLLGISRA TIYRHMATGIIRALQLRGRTIIRKSDIEKMFDDAPGYKKRSYGRKQTVLYYTTNEILEKFQIQKKTLYRRCKLYNIPKVE EGNRVFYNRTLIDKYFADLAEEINPACYYTPEQVMEKYGMSRNAVATFALRYNIPRINRHHEVYYSRAHIDAIKEKQEKL NPDYYTYDEITEKYGLTKINISYYVNKYDIKRFKQGSRTMVQRSEFDKVYIEHRDGTYTPKKREKKSDLPKETFVIPEGY YSSEQIAATYHMNRKTICKLCRENDIPKISHGGFNYYEQLSVDRFFAKYKAADNIKEWISAEQMEEIYGMSKDARCSFVH RHKIPSRVVYGKVQYSKDHIDIIKSGGFDQREMYYSVAEAMEKYSLRRDDVYNYARYNKIRKMHHGKPMFLLKEDFDKVM AEKSGI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 57935; Mature: 57935
Theoretical pI: Translated: 9.78; Mature: 9.78
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 5.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEIQRKCQWCGKPFIAHTMVTRYCSKSCNEKAYKEKKRKQRLQEYEERQNEQPMQEVGIV CCCHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCC GSKLYLSPAETATLLGISRATIYRHMATGIIRALQLRGRTIIRKSDIEKMFDDAPGYKKR CCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEEHHHHHHHHHCCCCCCHH SYGRKQTVLYYTTNEILEKFQIQKKTLYRRCKLYNIPKVEEGNRVFYNRTLIDKYFADLA CCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEHHHHHHHHHHHH EEINPACYYTPEQVMEKYGMSRNAVATFALRYNIPRINRHHEVYYSRAHIDAIKEKQEKL HHCCCCEEECHHHHHHHHCCCCCHHEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHC NPDYYTYDEITEKYGLTKINISYYVNKYDIKRFKQGSRTMVQRSEFDKVYIEHRDGTYTP CCCCEEHHHHHHHHCCEEEEEEEEEEHHHHHHHHCCHHHHHHHHCCCEEEEEECCCCCCC KKREKKSDLPKETFVIPEGYYSSEQIAATYHMNRKTICKLCRENDIPKISHGGFNYYEQL CHHHHHHCCCCCEEEECCCCCCCCCEEEEHCCCHHHHHHHHHCCCCCCCCCCCCCHHHHH SVDRFFAKYKAADNIKEWISAEQMEEIYGMSKDARCSFVHRHKIPSRVVYGKVQYSKDHI HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCEEEEEEEECCCHH DIIKSGGFDQREMYYSVAEAMEKYSLRRDDVYNYARYNKIRKMHHGKPMFLLKEDFDKVM HHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHH AEKSGI HHHCCC >Mature Secondary Structure MEIQRKCQWCGKPFIAHTMVTRYCSKSCNEKAYKEKKRKQRLQEYEERQNEQPMQEVGIV CCCHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCC GSKLYLSPAETATLLGISRATIYRHMATGIIRALQLRGRTIIRKSDIEKMFDDAPGYKKR CCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEEHHHHHHHHHCCCCCCHH SYGRKQTVLYYTTNEILEKFQIQKKTLYRRCKLYNIPKVEEGNRVFYNRTLIDKYFADLA CCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEHHHHHHHHHHHH EEINPACYYTPEQVMEKYGMSRNAVATFALRYNIPRINRHHEVYYSRAHIDAIKEKQEKL HHCCCCEEECHHHHHHHHCCCCCHHEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHC NPDYYTYDEITEKYGLTKINISYYVNKYDIKRFKQGSRTMVQRSEFDKVYIEHRDGTYTP CCCCEEHHHHHHHHCCEEEEEEEEEEHHHHHHHHCCHHHHHHHHCCCEEEEEECCCCCCC KKREKKSDLPKETFVIPEGYYSSEQIAATYHMNRKTICKLCRENDIPKISHGGFNYYEQL CHHHHHHCCCCCEEEECCCCCCCCCEEEEHCCCHHHHHHHHHCCCCCCCCCCCCCHHHHH SVDRFFAKYKAADNIKEWISAEQMEEIYGMSKDARCSFVHRHKIPSRVVYGKVQYSKDHI HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCEEEEEEEECCCHH DIIKSGGFDQREMYYSVAEAMEKYSLRRDDVYNYARYNKIRKMHHGKPMFLLKEDFDKVM HHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHH AEKSGI HHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA