Click here to switch to the map view.

The map label for this gene is yjhC [C]

Identifier: 29348881

GI number: 29348881

Start: 4470931

End: 4472223

Strand: Reverse

Name: yjhC [C]

Synonym: BT_3472

Alternate gene names: 29348881

Gene position: 4472223-4470931 (Counterclockwise)

Preceding gene: 29348882

Following gene: 29348880

Centisome position: 71.44

GC content: 40.6

Gene sequence:

>1293_bases
ATGAAACATACGCAAATTAGCAGAAGAGAGTTTCTGAAGAATATCGGAATGACCGGAGCTGGAGTTCTTCTTGCAGCAAG
TCCCTGGCTTTCTGCCTTTTCAGAAGCCGTGAACACCTCCAATGAAAAATGTCGTTTGGGGGTTATTGGACCAGGCTCAC
GAGGTCGCTTCCTTATGAGCTTTTTAGTCCAAAATCCTAAAGTTGATATCGTAGCACTTTGCGATATTTACCAGCCTTCG
ATAGATGAAGCATTGAAGCTTGCTCCCAAAGCAAAAGTATATGGTGACTATCGTGAGCTATTGGAAAACAACAACATAGA
TGCTATACTTGTAGCGACTCCTCTCAGTTCGCACTGTAAAATTGTAATGGATGCTTTTGATGCCGGTAAACATGTATTCT
GTGAAAAAACAATTGGTTTTACAATGGAAGAATGTTTCCGTATGTACAATAAACATCGTAGTACGGGAAAAATATTCTTC
ACAGGTCAACAGCGTCTGTTCGATCCTCGTTATATCAAAGCTATGGAAATGATTCATGCCGGCACATTTGGAGAAATAAA
TGCGATCCGCACATTCTGGTACAGAAATGGAGACTGGAGACGCCCAGTTCCTTCTGCTAATTTAGAACGACAAATTAACT
GGCGACTCTATAAAGAGTATTCAAAAGGACTAATGACGGAACTGGCCTGCCATCAATTACAAATAGGAAGTTGGGCATTG
AATAAACTCCCAGAGAAAGTGATGGGACATGGAGCTATTACATACTGGAAAGACGGTCGGGAAGTATACGACAATGTAAG
TTGCCTATATGTATTCGATGATGGCGTAAAAATGACATTCGATTCTGTTATTTCCAATCAATTTTATGGTTTGGAAGAGC
AAATCATGGGAAATCTCGGAACTGTTGAACCAGAAAAAGGTAAATATTACTTTGAAAGTATCCCGCCGGCACCCGGTTTT
CTGCAAATGATAAACGATTGGGAAAATAAATTATTTGACACTCTGCCTTTCGCAGGTACCAGTTGGGCTCCGGAAACGGC
TAACGAAAACAAAGGAGAATTAATCCTCGGAGAACGTCCTAAGAGCGATGGCACTTCTTTGTTATTGGAAGCTTTTGTAG
AAGCTGTTATTACTCGCAAACAACCCGCAAGAATCGCGGAAGAAGGATATTATGCGAGTATGCTCTGCCTATTGGGTCAC
CAAGCGTTACAGGAAGAAAAAACACTATATTTCCCTGATGAATACAAAATTAATTATCTGAATCATCAATCAAAAACATC
CGAAGCAGTATGA

Upstream 100 bases:

>100_bases
TGCCAATTTTAATAAAAAGAAGAGTGAATTTTATAGAAAGTTTACTCTTCTTTCTATATTTGCATACAGAATAAAATACT
GAGAATCAAATAACTTCAAA

Downstream 100 bases:

>100_bases
AAGATACAATCCTGACCGCTCGACGAAAGAAAACAGAGTTGATTACACTGTTCCTGTGTTTTATTATTGCCAATTTGGTC
AATTTATACTCTATATTTAC

Product: putative hydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 430; Mature: 430

Protein sequence:

>430_residues
MKHTQISRREFLKNIGMTGAGVLLAASPWLSAFSEAVNTSNEKCRLGVIGPGSRGRFLMSFLVQNPKVDIVALCDIYQPS
IDEALKLAPKAKVYGDYRELLENNNIDAILVATPLSSHCKIVMDAFDAGKHVFCEKTIGFTMEECFRMYNKHRSTGKIFF
TGQQRLFDPRYIKAMEMIHAGTFGEINAIRTFWYRNGDWRRPVPSANLERQINWRLYKEYSKGLMTELACHQLQIGSWAL
NKLPEKVMGHGAITYWKDGREVYDNVSCLYVFDDGVKMTFDSVISNQFYGLEEQIMGNLGTVEPEKGKYYFESIPPAPGF
LQMINDWENKLFDTLPFAGTSWAPETANENKGELILGERPKSDGTSLLLEAFVEAVITRKQPARIAEEGYYASMLCLLGH
QALQEEKTLYFPDEYKINYLNHQSKTSEAV

Sequences:

>Translated_430_residues
MKHTQISRREFLKNIGMTGAGVLLAASPWLSAFSEAVNTSNEKCRLGVIGPGSRGRFLMSFLVQNPKVDIVALCDIYQPS
IDEALKLAPKAKVYGDYRELLENNNIDAILVATPLSSHCKIVMDAFDAGKHVFCEKTIGFTMEECFRMYNKHRSTGKIFF
TGQQRLFDPRYIKAMEMIHAGTFGEINAIRTFWYRNGDWRRPVPSANLERQINWRLYKEYSKGLMTELACHQLQIGSWAL
NKLPEKVMGHGAITYWKDGREVYDNVSCLYVFDDGVKMTFDSVISNQFYGLEEQIMGNLGTVEPEKGKYYFESIPPAPGF
LQMINDWENKLFDTLPFAGTSWAPETANENKGELILGERPKSDGTSLLLEAFVEAVITRKQPARIAEEGYYASMLCLLGH
QALQEEKTLYFPDEYKINYLNHQSKTSEAV
>Mature_430_residues
MKHTQISRREFLKNIGMTGAGVLLAASPWLSAFSEAVNTSNEKCRLGVIGPGSRGRFLMSFLVQNPKVDIVALCDIYQPS
IDEALKLAPKAKVYGDYRELLENNNIDAILVATPLSSHCKIVMDAFDAGKHVFCEKTIGFTMEECFRMYNKHRSTGKIFF
TGQQRLFDPRYIKAMEMIHAGTFGEINAIRTFWYRNGDWRRPVPSANLERQINWRLYKEYSKGLMTELACHQLQIGSWAL
NKLPEKVMGHGAITYWKDGREVYDNVSCLYVFDDGVKMTFDSVISNQFYGLEEQIMGNLGTVEPEKGKYYFESIPPAPGF
LQMINDWENKLFDTLPFAGTSWAPETANENKGELILGERPKSDGTSLLLEAFVEAVITRKQPARIAEEGYYASMLCLLGH
QALQEEKTLYFPDEYKINYLNHQSKTSEAV

Specific function: Glycosidase [H]

COG id: COG0673

COG function: function code R; Predicted dehydrogenases and related proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gfo/idh/mocA family. Glycosyl hydrolase 109 subfamily [H]

Homologues:

Organism=Escherichia coli, GI87082405, Length=201, Percent_Identity=28.8557213930348, Blast_Score=73, Evalue=4e-14,
Organism=Drosophila melanogaster, GI24581117, Length=261, Percent_Identity=22.6053639846743, Blast_Score=77, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR000683
- InterPro:   IPR006311
- InterPro:   IPR019546 [H]

Pfam domain/function: PF01408 GFO_IDH_MocA; PF10518 TAT_signal [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 48873; Mature: 48873

Theoretical pI: Translated: 6.60; Mature: 6.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKHTQISRREFLKNIGMTGAGVLLAASPWLSAFSEAVNTSNEKCRLGVIGPGSRGRFLMS
CCCCCHHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHH
FLVQNPKVDIVALCDIYQPSIDEALKLAPKAKVYGDYRELLENNNIDAILVATPLSSHCK
HHHCCCCEEEEEEECCCCCCHHHHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCE
IVMDAFDAGKHVFCEKTIGFTMEECFRMYNKHRSTGKIFFTGQQRLFDPRYIKAMEMIHA
EEEEHHCCCCEEEEHHHCCCCHHHHHHHHHCCCCCCEEEECCCHHCCCHHHHHHHHHHHC
GTFGEINAIRTFWYRNGDWRRPVPSANLERQINWRLYKEYSKGLMTELACHQLQIGSWAL
CCCCCHHHEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
NKLPEKVMGHGAITYWKDGREVYDNVSCLYVFDDGVKMTFDSVISNQFYGLEEQIMGNLG
HHCHHHHHCCCCEEEECCCHHHHCCCEEEEEEECCCHHHHHHHHHHHCCCCHHHHHCCCC
TVEPEKGKYYFESIPPAPGFLQMINDWENKLFDTLPFAGTSWAPETANENKGELILGERP
CCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCCC
KSDGTSLLLEAFVEAVITRKQPARIAEEGYYASMLCLLGHQALQEEKTLYFPDEYKINYL
CCCHHHHHHHHHHHHHHCCCCCHHHHHCCHHHHHHHHHHHHHHHCCCCEECCCCCEEEEE
NHQSKTSEAV
CCCCCCCCCC
>Mature Secondary Structure
MKHTQISRREFLKNIGMTGAGVLLAASPWLSAFSEAVNTSNEKCRLGVIGPGSRGRFLMS
CCCCCHHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHH
FLVQNPKVDIVALCDIYQPSIDEALKLAPKAKVYGDYRELLENNNIDAILVATPLSSHCK
HHHCCCCEEEEEEECCCCCCHHHHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCE
IVMDAFDAGKHVFCEKTIGFTMEECFRMYNKHRSTGKIFFTGQQRLFDPRYIKAMEMIHA
EEEEHHCCCCEEEEHHHCCCCHHHHHHHHHCCCCCCEEEECCCHHCCCHHHHHHHHHHHC
GTFGEINAIRTFWYRNGDWRRPVPSANLERQINWRLYKEYSKGLMTELACHQLQIGSWAL
CCCCCHHHEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
NKLPEKVMGHGAITYWKDGREVYDNVSCLYVFDDGVKMTFDSVISNQFYGLEEQIMGNLG
HHCHHHHHCCCCEEEECCCHHHHCCCEEEEEEECCCHHHHHHHHHHHCCCCHHHHHCCCC
TVEPEKGKYYFESIPPAPGFLQMINDWENKLFDTLPFAGTSWAPETANENKGELILGERP
CCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCCC
KSDGTSLLLEAFVEAVITRKQPARIAEEGYYASMLCLLGHQALQEEKTLYFPDEYKINYL
CCCHHHHHHHHHHHHHHCCCCCHHHHHCCHHHHHHHHHHHHHHHCCCCEECCCCCEEEEE
NHQSKTSEAV
CCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA