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The map label for this gene is yagH [H]

Identifier: 29348517

GI number: 29348517

Start: 3953822

End: 3954811

Strand: Reverse

Name: yagH [H]

Synonym: BT_3108

Alternate gene names: 29348517

Gene position: 3954811-3953822 (Counterclockwise)

Preceding gene: 29348518

Following gene: 29348516

Centisome position: 63.17

GC content: 37.88

Gene sequence:

>990_bases
ATGAAAACACTCATCCAATTTTTATTGGCGACATTCACCATTTTAGCTTGTGTATGTTGCAAGACTGCAAAAGAAGAAAA
AACAGACGATAAATTGAATGAAATTACCTTTGCAGATCCGACTATATTTGTAGAAAATGGCAAGTATTATCTCACAGGTA
CGCGCAATAGAGAACCTAATGGATTTGCTATATTCGAATCTACAGATTTGAAGGAATGGAAGACTGCTAATGGAGATACT
CTTCAGTTGATACTACGCAAGGGAGATTCCGCTTATGGTGAAAGAGGATTCTGGGCTCCGCAATTATTTAAGGAAGGAAA
TAGGTATTATCTGACATATACGGCTAATGAACATACTGCACTGGCATCCTCCAACTCTGTATATGGTCCATTCAGACAAG
ACTCCATACGTCCTATTGACGAGACGGCCAAAAATATCGATTCATTTTTATTCAAAGATTCAGATGGAAAGTACTACTTG
TATCATGTACGTTTCAACAAAGGAAATTATCTGTGGGTAGCTGAATTTGACTTGCAGAAAGGCTGTATTAAGCCCGAAAC
TCTGAAAAAGTGTTTCGATAATACGGAGGCATGGGAAAGAACGCCTAATTATAAATCGGCACCAGTAATGGAAGGTCCTA
CTGTTGTCAAACTCGATGATTTATATTATTTGTTCTATTCTGCCAATCATTTCAAGAATATAGATTATGCTGTGGGATAT
GCTACGTCTACGTCTCCTTACGGTCCGTGGAAGAAGCATGCAAACAATCCTATTATTCACCGAAGCATCGTCCACGAAAA
CGGCTCCGGACATGGGGATTTGTTTAAAGGTTTGGACGGAAGATATTACTATGTATATCATGTTCATCATTCAGATTCAA
TTGTGCAGCCGCGTAAGACACGCATTGTTCCGTTAATCTTAAAAAAGGAAAATGACGTATATAGTATAACGATTGATAAA
GAAAATGTTATCAAGCCAATGTGGAAATAA

Upstream 100 bases:

>100_bases
TGCTCATAATAAAACATATTTTCTATCGTCTACACCTTTTTTCTTTTACTTTTGCTGCATCACAATCATACATAAATAAC
GTTTAACTTTTTAGAATCAT

Downstream 100 bases:

>100_bases
TAGAAGTATATAAAACAATATGTATTATGATGGATGGTAATTTTATATCTCGAAAAAGAATAGGAGGCATAGTTGCTTTA
TCCTTTTTACAGTTTGGAAA

Product: putative beta-xylosidase

Products: NA

Alternate protein names: 1,4-beta-D-xylan xylohydrolase; Xylan 1,4-beta-xylosidase [H]

Number of amino acids: Translated: 329; Mature: 329

Protein sequence:

>329_residues
MKTLIQFLLATFTILACVCCKTAKEEKTDDKLNEITFADPTIFVENGKYYLTGTRNREPNGFAIFESTDLKEWKTANGDT
LQLILRKGDSAYGERGFWAPQLFKEGNRYYLTYTANEHTALASSNSVYGPFRQDSIRPIDETAKNIDSFLFKDSDGKYYL
YHVRFNKGNYLWVAEFDLQKGCIKPETLKKCFDNTEAWERTPNYKSAPVMEGPTVVKLDDLYYLFYSANHFKNIDYAVGY
ATSTSPYGPWKKHANNPIIHRSIVHENGSGHGDLFKGLDGRYYYVYHVHHSDSIVQPRKTRIVPLILKKENDVYSITIDK
ENVIKPMWK

Sequences:

>Translated_329_residues
MKTLIQFLLATFTILACVCCKTAKEEKTDDKLNEITFADPTIFVENGKYYLTGTRNREPNGFAIFESTDLKEWKTANGDT
LQLILRKGDSAYGERGFWAPQLFKEGNRYYLTYTANEHTALASSNSVYGPFRQDSIRPIDETAKNIDSFLFKDSDGKYYL
YHVRFNKGNYLWVAEFDLQKGCIKPETLKKCFDNTEAWERTPNYKSAPVMEGPTVVKLDDLYYLFYSANHFKNIDYAVGY
ATSTSPYGPWKKHANNPIIHRSIVHENGSGHGDLFKGLDGRYYYVYHVHHSDSIVQPRKTRIVPLILKKENDVYSITIDK
ENVIKPMWK
>Mature_329_residues
MKTLIQFLLATFTILACVCCKTAKEEKTDDKLNEITFADPTIFVENGKYYLTGTRNREPNGFAIFESTDLKEWKTANGDT
LQLILRKGDSAYGERGFWAPQLFKEGNRYYLTYTANEHTALASSNSVYGPFRQDSIRPIDETAKNIDSFLFKDSDGKYYL
YHVRFNKGNYLWVAEFDLQKGCIKPETLKKCFDNTEAWERTPNYKSAPVMEGPTVVKLDDLYYLFYSANHFKNIDYAVGY
ATSTSPYGPWKKHANNPIIHRSIVHENGSGHGDLFKGLDGRYYYVYHVHHSDSIVQPRKTRIVPLILKKENDVYSITIDK
ENVIKPMWK

Specific function: Unknown

COG id: COG3507

COG function: function code G; Beta-xylosidase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 43 family [H]

Homologues:

Organism=Escherichia coli, GI1786467, Length=290, Percent_Identity=26.2068965517241, Blast_Score=68, Evalue=8e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008985
- InterPro:   IPR013320
- InterPro:   IPR009784
- InterPro:   IPR006710 [H]

Pfam domain/function: PF07081 DUF1349; PF04616 Glyco_hydro_43 [H]

EC number: =3.2.1.37 [H]

Molecular weight: Translated: 38001; Mature: 38001

Theoretical pI: Translated: 8.39; Mature: 8.39

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTLIQFLLATFTILACVCCKTAKEEKTDDKLNEITFADPTIFVENGKYYLTGTRNREPN
CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHEEEECCCEEEEECCEEEEEECCCCCCC
GFAIFESTDLKEWKTANGDTLQLILRKGDSAYGERGFWAPQLFKEGNRYYLTYTANEHTA
CEEEEECCCCHHHHCCCCCEEEEEEECCCCCCCCCCCCCHHHHHCCCEEEEEEECCCCEE
LASSNSVYGPFRQDSIRPIDETAKNIDSFLFKDSDGKYYLYHVRFNKGNYLWVAEFDLQK
EECCCCCCCCCCCCCCCCHHHHHHHHHHHEEECCCCCEEEEEEEECCCCEEEEEEECCCC
GCIKPETLKKCFDNTEAWERTPNYKSAPVMEGPTVVKLDDLYYLFYSANHFKNIDYAVGY
CCCCHHHHHHHHCCCHHHHCCCCCCCCCCCCCCEEEEECCEEEEEEECCCCCCCCEEEEE
ATSTSPYGPWKKHANNPIIHRSIVHENGSGHGDLFKGLDGRYYYVYHVHHSDSIVQPRKT
ECCCCCCCCHHHHCCCCEEEEEEEECCCCCCCHHHHCCCCCEEEEEEEECCCCCCCCCHH
RIVPLILKKENDVYSITIDKENVIKPMWK
EEEEEEEECCCCEEEEEECCHHCCCCCCC
>Mature Secondary Structure
MKTLIQFLLATFTILACVCCKTAKEEKTDDKLNEITFADPTIFVENGKYYLTGTRNREPN
CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHEEEECCCEEEEECCEEEEEECCCCCCC
GFAIFESTDLKEWKTANGDTLQLILRKGDSAYGERGFWAPQLFKEGNRYYLTYTANEHTA
CEEEEECCCCHHHHCCCCCEEEEEEECCCCCCCCCCCCCHHHHHCCCEEEEEEECCCCEE
LASSNSVYGPFRQDSIRPIDETAKNIDSFLFKDSDGKYYLYHVRFNKGNYLWVAEFDLQK
EECCCCCCCCCCCCCCCCHHHHHHHHHHHEEECCCCCEEEEEEEECCCCEEEEEEECCCC
GCIKPETLKKCFDNTEAWERTPNYKSAPVMEGPTVVKLDDLYYLFYSANHFKNIDYAVGY
CCCCHHHHHHHHCCCHHHHCCCCCCCCCCCCCCEEEEECCEEEEEEECCCCCCCCEEEEE
ATSTSPYGPWKKHANNPIIHRSIVHENGSGHGDLFKGLDGRYYYVYHVHHSDSIVQPRKT
ECCCCCCCCHHHHCCCCEEEEEEEECCCCCCCHHHHCCCCCEEEEEEEECCCCCCCCCHH
RIVPLILKKENDVYSITIDKENVIKPMWK
EEEEEEEECCCCEEEEEECCHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]