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The map label for this gene is araA [C]

Identifier: 29348318

GI number: 29348318

Start: 3644584

End: 3646008

Strand: Reverse

Name: araA [C]

Synonym: BT_2909

Alternate gene names: 29348318

Gene position: 3646008-3644584 (Counterclockwise)

Preceding gene: 29348319

Following gene: 29348317

Centisome position: 58.24

GC content: 40.7

Gene sequence:

>1425_bases
ATGATACAACAAAAAGTAAGAGTGGGACTTTTAGGAGTCGGATTGGATACTTATTGGGGACAATTTGAAGGGCTTCTTCC
CCGTCTGTTAACTTATCAGGATGAAATAGCTGCCAAAATAGAGGCAATGGACGTACAAGTTATCAATACGGGGATGGTGG
ATTCGCCTCTAAAAGCTAATGAATGTGTCCTACAATTAAAACAAGCTGATGTAGAATTGGTTTTTCTGTTTATTTCTACT
TATGCTCTTTCTTCTACGATACTACCTGTAGCTCAACAAGTAGGCAAGCCTATTATTATATTAAATATACAGCCTGCATC
AGCAATAGATTATCAAAAACTCAATTCAATGGGGGATAGAGGAAGAATGACAGGTGAATGGTTGGCACATTGTCAGGCAT
GTTCTGTTCCGGAGTTTGCGAGTGTTTTGAATAGAGCCGGTGTGCGATATGATATTATCACCGGCTATTTATCAGAAGAT
TATGTTTGGGAGGAAATAGCCTCTTGGGTTGACGCTGTACGTGTAATGTATGGAATGCGCACAAGCCGTTTGGGAGTTTT
GGGGCATTACTATTGTGGTATGCTAGATGTATATACTGATCTTATGAAGCAGAGCGCAGTGTTTGGTACTCATATAGAGT
TGCTGGAGATGTGTGAGCTAAAAGCTTATAGAGAAGAAGTTAGCGATGGGGAACTGAAGCGAAAACTGGACGAATTTTAT
GATAAGTTTAATGTGGAAGCATCATGTAGTTCGGAAGAGCTAGTGAGGGCTGCACGTACTTCTGTGGCTTTGGATAAATT
AGTGAATGTGCATCAACTGGGAGCGATGGCTTATTATTACGAAGGATTCTGTGGGAATGATTATGAGAATATTGTAACTT
CTGTTATTGCAGGTAATACGTTGTTGACAGGATATGGAATACCCGTTGCCGGAGAATGTGAAGTGAAAAATGCACAGGCG
ATGAAAATTATGTCACTATTAAAAGCTGGTGGTTCTTTCTCTGAATTTTATGCAATGGATTTTAAGGATGATATTGTATT
ACTAGGACATGATGGCCCGGCACATTTTGCAATCGCCGAAGAGAAAGTGAAACTAGTGCCTCTTCCATTATATCACGGTA
AACCGGGTAAAGGTCTGTCCATCCAGATGAGTGTTAAACCAGGTGATGTTACACTTTTGTCGGTATGTGAGGGAAGAGAC
GGAGTCTTTCTACTTGCTGCTGAGGGAGAGGCTGTACAAGGAGAAACTCTACATATTGGCAATACAAATAGTCGTTATCG
CTTTCCGTGTGGTGCTCGTCGGTTTATGGATCAATGGAGTAAAGCGGGACCTTCACATCATTGTGCGATTGGCATTGGAC
ATAAAGTCTCTGAACTGAAGAAACTGGCATTTCTTCTGGATATTCCAATAATAGTAGTTGAATAA

Upstream 100 bases:

>100_bases
GAATTTCGTATCAAATAATGATAGTGTTCTGGCAATTATCGAAAGTCTTTCTCTTTTAAGATGACTAAGTTTGTATCATA
ATTAAAAAATGAATAATGCT

Downstream 100 bases:

>100_bases
TGCTTTAAAACTCTTTTTATGGAAAAGTTGAAGTATTCTCTTTTGTTTATGATTTCGATTCTGGCTATTTCCAATAGATG
GGTGTCGGCAAATGACATCG

Product: putative L-arabinose isomerase

Products: L-Ribulose [C]

Alternate protein names: L-Arabinose Isomerase Protein; L-Fucose Isomerase-Like Protein; L-Fucose Isomerase _2 Domain Protein

Number of amino acids: Translated: 474; Mature: 474

Protein sequence:

>474_residues
MIQQKVRVGLLGVGLDTYWGQFEGLLPRLLTYQDEIAAKIEAMDVQVINTGMVDSPLKANECVLQLKQADVELVFLFIST
YALSSTILPVAQQVGKPIIILNIQPASAIDYQKLNSMGDRGRMTGEWLAHCQACSVPEFASVLNRAGVRYDIITGYLSED
YVWEEIASWVDAVRVMYGMRTSRLGVLGHYYCGMLDVYTDLMKQSAVFGTHIELLEMCELKAYREEVSDGELKRKLDEFY
DKFNVEASCSSEELVRAARTSVALDKLVNVHQLGAMAYYYEGFCGNDYENIVTSVIAGNTLLTGYGIPVAGECEVKNAQA
MKIMSLLKAGGSFSEFYAMDFKDDIVLLGHDGPAHFAIAEEKVKLVPLPLYHGKPGKGLSIQMSVKPGDVTLLSVCEGRD
GVFLLAAEGEAVQGETLHIGNTNSRYRFPCGARRFMDQWSKAGPSHHCAIGIGHKVSELKKLAFLLDIPIIVVE

Sequences:

>Translated_474_residues
MIQQKVRVGLLGVGLDTYWGQFEGLLPRLLTYQDEIAAKIEAMDVQVINTGMVDSPLKANECVLQLKQADVELVFLFIST
YALSSTILPVAQQVGKPIIILNIQPASAIDYQKLNSMGDRGRMTGEWLAHCQACSVPEFASVLNRAGVRYDIITGYLSED
YVWEEIASWVDAVRVMYGMRTSRLGVLGHYYCGMLDVYTDLMKQSAVFGTHIELLEMCELKAYREEVSDGELKRKLDEFY
DKFNVEASCSSEELVRAARTSVALDKLVNVHQLGAMAYYYEGFCGNDYENIVTSVIAGNTLLTGYGIPVAGECEVKNAQA
MKIMSLLKAGGSFSEFYAMDFKDDIVLLGHDGPAHFAIAEEKVKLVPLPLYHGKPGKGLSIQMSVKPGDVTLLSVCEGRD
GVFLLAAEGEAVQGETLHIGNTNSRYRFPCGARRFMDQWSKAGPSHHCAIGIGHKVSELKKLAFLLDIPIIVVE
>Mature_474_residues
MIQQKVRVGLLGVGLDTYWGQFEGLLPRLLTYQDEIAAKIEAMDVQVINTGMVDSPLKANECVLQLKQADVELVFLFIST
YALSSTILPVAQQVGKPIIILNIQPASAIDYQKLNSMGDRGRMTGEWLAHCQACSVPEFASVLNRAGVRYDIITGYLSED
YVWEEIASWVDAVRVMYGMRTSRLGVLGHYYCGMLDVYTDLMKQSAVFGTHIELLEMCELKAYREEVSDGELKRKLDEFY
DKFNVEASCSSEELVRAARTSVALDKLVNVHQLGAMAYYYEGFCGNDYENIVTSVIAGNTLLTGYGIPVAGECEVKNAQA
MKIMSLLKAGGSFSEFYAMDFKDDIVLLGHDGPAHFAIAEEKVKLVPLPLYHGKPGKGLSIQMSVKPGDVTLLSVCEGRD
GVFLLAAEGEAVQGETLHIGNTNSRYRFPCGARRFMDQWSKAGPSHHCAIGIGHKVSELKKLAFLLDIPIIVVE

Specific function: L-arabinose catabolism; first step. [C]

COG id: COG2160

COG function: function code G; L-arabinose isomerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 5.3.1.4 [C]

Molecular weight: Translated: 52302; Mature: 52302

Theoretical pI: Translated: 5.11; Mature: 5.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIQQKVRVGLLGVGLDTYWGQFEGLLPRLLTYQDEIAAKIEAMDVQVINTGMVDSPLKAN
CCCCCEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCCCCCHH
ECVLQLKQADVELVFLFISTYALSSTILPVAQQVGKPIIILNIQPASAIDYQKLNSMGDR
HHHHHHHHCCCEEHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHCCCCC
GRMTGEWLAHCQACSVPEFASVLNRAGVRYDIITGYLSEDYVWEEIASWVDAVRVMYGMR
CCCCHHHHHHHHCCCCHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCC
TSRLGVLGHYYCGMLDVYTDLMKQSAVFGTHIELLEMCELKAYREEVSDGELKRKLDEFY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
DKFNVEASCSSEELVRAARTSVALDKLVNVHQLGAMAYYYEGFCGNDYENIVTSVIAGNT
HHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHCCCE
LLTGYGIPVAGECEVKNAQAMKIMSLLKAGGSFSEFYAMDFKDDIVLLGHDGPAHFAIAE
EEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHEEEECCCCCEEEEECCCCCEEEEEC
EKVKLVPLPLYHGKPGKGLSIQMSVKPGDVTLLSVCEGRDGVFLLAAEGEAVQGETLHIG
CCEEEEEEEEECCCCCCCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCCCCEEEEC
NTNSRYRFPCGARRFMDQWSKAGPSHHCAIGIGHKVSELKKLAFLLDIPIIVVE
CCCCEEECCCHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCCEEEEC
>Mature Secondary Structure
MIQQKVRVGLLGVGLDTYWGQFEGLLPRLLTYQDEIAAKIEAMDVQVINTGMVDSPLKAN
CCCCCEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCCCCCHH
ECVLQLKQADVELVFLFISTYALSSTILPVAQQVGKPIIILNIQPASAIDYQKLNSMGDR
HHHHHHHHCCCEEHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHCCCCC
GRMTGEWLAHCQACSVPEFASVLNRAGVRYDIITGYLSEDYVWEEIASWVDAVRVMYGMR
CCCCHHHHHHHHCCCCHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCC
TSRLGVLGHYYCGMLDVYTDLMKQSAVFGTHIELLEMCELKAYREEVSDGELKRKLDEFY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
DKFNVEASCSSEELVRAARTSVALDKLVNVHQLGAMAYYYEGFCGNDYENIVTSVIAGNT
HHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHCCCE
LLTGYGIPVAGECEVKNAQAMKIMSLLKAGGSFSEFYAMDFKDDIVLLGHDGPAHFAIAE
EEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHEEEECCCCCEEEEECCCCCEEEEEC
EKVKLVPLPLYHGKPGKGLSIQMSVKPGDVTLLSVCEGRDGVFLLAAEGEAVQGETLHIG
CCEEEEEEEEECCCCCCCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCCCCEEEEC
NTNSRYRFPCGARRFMDQWSKAGPSHHCAIGIGHKVSELKKLAFLLDIPIIVVE
CCCCEEECCCHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): 18 {L-ribulose}} 28 {L-arabinose}} [C]

Substrates: L-Arabinose [C]

Specific reaction: L-Arabinose <==> L-Ribulose [C]

General reaction: Intramolecular oxidoreduction; Isomerization [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA