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The map label for this gene is mmsR [H]

Identifier: 29348319

GI number: 29348319

Start: 3646091

End: 3646972

Strand: Reverse

Name: mmsR [H]

Synonym: BT_2910

Alternate gene names: 29348319

Gene position: 3646972-3646091 (Counterclockwise)

Preceding gene: 29348320

Following gene: 29348318

Centisome position: 58.25

GC content: 37.87

Gene sequence:

>882_bases
ATGGAACGCATGTCCATTAAATATTTCGTGAATAATAATAGTTTGGGACCAGACCGGAACATTTCTTCAGTCGGCTTTGA
AGAAATTCCCCCAAATACTTCTTATCCGACTTTGAATCATTCTGCCGGTTATTATTTTAATCCGGATAAAGGACGTATAC
TGACGGAGTATCAACTGATTTATATTACAGAGGGAGAAGGAGTGCTTGAAACAAGAAGTGGGGGAGTGTTTACTATCAAG
CGAGGTATGATTTTTGTTCTTTTTCCGGGCGAATGGCACACCTATTATCCTAATTATCAAACAGGTTGGAGTCATTATTG
GATCGGCTTTTGCGGTCCGGAAGTTGATAGCTGGATGACGAATGAGTATTGTTCGAAAGAAAGTCCTGTATTTAAGGTCG
GTATCAATGATGAGATCGTTTCTTTATTCAGAAAAGCTATTGATGTTGCTAACGAAGAACCTACTTTATATCAACGCGTA
TTGAGTGGATTGGTGACCTATCTGGTAGCACTAATGTGTAGTATCGATAAGAACCTTCAGGTAGAGAATGATGATTTCTC
TTCTAAAATAGATTATGCTTGTGTGCTCATGAAGGAATTGATAGATCAACCAGTTTCTATGCAAGAGATTGCCAAAAAAG
CAGGTATGGGATATTCTCTTTTTCGAAAGTTGTTTAAGGAACAGAAGAATTATGCACCTGTGCAATATTTCCAGAATCTG
AAAATACAGAAAGCCATAGAGTTGTTGACTACTACTACTATTCCGGTAAAAGAGATAGCATATAGGCTCGATTTTGAATC
CCCGGCTTATTTCTCTGCCCGGTTCAAGAAACAAACAGGAAAATCACCTATAGAATATCGAGAAGAATTTCGTATCAAAT
AA

Upstream 100 bases:

>100_bases
GAAAAAGAAGTATTGGGAAACCATGTTTTTTCTTTCTTTCTTGCAGTTTTAGGATTTTCTTGATAACTTTCCGCCCTACT
TTTTCTAAATACTAGTTGCT

Downstream 100 bases:

>100_bases
TGATAGTGTTCTGGCAATTATCGAAAGTCTTTCTCTTTTAAGATGACTAAGTTTGTATCATAATTAAAAAATGAATAATG
CTATGATACAACAAAAAGTA

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 293; Mature: 293

Protein sequence:

>293_residues
MERMSIKYFVNNNSLGPDRNISSVGFEEIPPNTSYPTLNHSAGYYFNPDKGRILTEYQLIYITEGEGVLETRSGGVFTIK
RGMIFVLFPGEWHTYYPNYQTGWSHYWIGFCGPEVDSWMTNEYCSKESPVFKVGINDEIVSLFRKAIDVANEEPTLYQRV
LSGLVTYLVALMCSIDKNLQVENDDFSSKIDYACVLMKELIDQPVSMQEIAKKAGMGYSLFRKLFKEQKNYAPVQYFQNL
KIQKAIELLTTTTIPVKEIAYRLDFESPAYFSARFKKQTGKSPIEYREEFRIK

Sequences:

>Translated_293_residues
MERMSIKYFVNNNSLGPDRNISSVGFEEIPPNTSYPTLNHSAGYYFNPDKGRILTEYQLIYITEGEGVLETRSGGVFTIK
RGMIFVLFPGEWHTYYPNYQTGWSHYWIGFCGPEVDSWMTNEYCSKESPVFKVGINDEIVSLFRKAIDVANEEPTLYQRV
LSGLVTYLVALMCSIDKNLQVENDDFSSKIDYACVLMKELIDQPVSMQEIAKKAGMGYSLFRKLFKEQKNYAPVQYFQNL
KIQKAIELLTTTTIPVKEIAYRLDFESPAYFSARFKKQTGKSPIEYREEFRIK
>Mature_293_residues
MERMSIKYFVNNNSLGPDRNISSVGFEEIPPNTSYPTLNHSAGYYFNPDKGRILTEYQLIYITEGEGVLETRSGGVFTIK
RGMIFVLFPGEWHTYYPNYQTGWSHYWIGFCGPEVDSWMTNEYCSKESPVFKVGINDEIVSLFRKAIDVANEEPTLYQRV
LSGLVTYLVALMCSIDKNLQVENDDFSSKIDYACVLMKELIDQPVSMQEIAKKAGMGYSLFRKLFKEQKNYAPVQYFQNL
KIQKAIELLTTTTIPVKEIAYRLDFESPAYFSARFKKQTGKSPIEYREEFRIK

Specific function: Regulatory protein for the mmsAB operon. Activates the transcription of the mmsAB genes [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786251, Length=247, Percent_Identity=25.1012145748988, Blast_Score=70, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 33887; Mature: 33887

Theoretical pI: Translated: 6.30; Mature: 6.30

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MERMSIKYFVNNNSLGPDRNISSVGFEEIPPNTSYPTLNHSAGYYFNPDKGRILTEYQLI
CCCEEEEEEEECCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCEEECCCCCCEEEEEEEE
YITEGEGVLETRSGGVFTIKRGMIFVLFPGEWHTYYPNYQTGWSHYWIGFCGPEVDSWMT
EEECCCCEEEECCCCEEEEECCEEEEEECCCCEEECCCCCCCCCEEEEEEECCCHHHHHH
NEYCSKESPVFKVGINDEIVSLFRKAIDVANEEPTLYQRVLSGLVTYLVALMCSIDKNLQ
HHHCCCCCCEEEECCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCE
VENDDFSSKIDYACVLMKELIDQPVSMQEIAKKAGMGYSLFRKLFKEQKNYAPVQYFQNL
ECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHCC
KIQKAIELLTTTTIPVKEIAYRLDFESPAYFSARFKKQTGKSPIEYREEFRIK
CHHHHHHHHHCCCCCHHHHHHHCCCCCCCHHHHHHHHHCCCCHHHHHHHCCCC
>Mature Secondary Structure
MERMSIKYFVNNNSLGPDRNISSVGFEEIPPNTSYPTLNHSAGYYFNPDKGRILTEYQLI
CCCEEEEEEEECCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCEEECCCCCCEEEEEEEE
YITEGEGVLETRSGGVFTIKRGMIFVLFPGEWHTYYPNYQTGWSHYWIGFCGPEVDSWMT
EEECCCCEEEECCCCEEEEECCEEEEEECCCCEEECCCCCCCCCEEEEEEECCCHHHHHH
NEYCSKESPVFKVGINDEIVSLFRKAIDVANEEPTLYQRVLSGLVTYLVALMCSIDKNLQ
HHHCCCCCCEEEECCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCE
VENDDFSSKIDYACVLMKELIDQPVSMQEIAKKAGMGYSLFRKLFKEQKNYAPVQYFQNL
ECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHCC
KIQKAIELLTTTTIPVKEIAYRLDFESPAYFSARFKKQTGKSPIEYREEFRIK
CHHHHHHHHHCCCCCHHHHHHHCCCCCCCHHHHHHHHHCCCCHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1339433; 10984043 [H]