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The map label for this gene is abnA [H]

Identifier: 29348309

GI number: 29348309

Start: 3629527

End: 3630504

Strand: Reverse

Name: abnA [H]

Synonym: BT_2900

Alternate gene names: 29348309

Gene position: 3630504-3629527 (Counterclockwise)

Preceding gene: 29348310

Following gene: 29348308

Centisome position: 57.99

GC content: 39.67

Gene sequence:

>978_bases
ATGAAAAAACTGTTGTTAATAGAAATTCTCCTTACCATAAGTTTTACGCTTATGGCAGAAGATCCCGCTAAGACTTATAA
GAACCCGGTTGTTAATTATAGTTTGCCCGATCCCAGTGTGATCAGGGCAGAGGATGGATACTTTTATTTGTATGCAACGG
AAGATATCAGGAATTTACCGATTCACCGTTCTAAAGACTTGATCAAATGGGAGTCTGTCGGTACAGCTTTTACCGATGAA
ACACGTCCGACTTTTGAGCCAAAAGGGAATTTATGGGCACCTGACATTAATAAAATAGGAGACAAATATGTACTCTATTA
TTCGATGTCTTGCTGGGGAGGTGAGTGGACTTGTGGAATAGGCGTAGCTACTGCCGACAAACCGGAAGGCCCTTTCGTAG
ATCATGGAATGATGTTTAGAAGTAATGAAATTGGGGTTCAGAATTCGATTGATCCATTTTATATAGAAGATGGAGGGCGG
AAATATATGTTTTGGGGGAGTTTTCGCGGCATATATGGAATAGAGTTAACAGCCGACGGGCTAAAAGTAAAATCTGGAGC
AGACAAGAAACAGATAGCAGGAACCGCTTATGAGGGGACTTATATTCATAAAAAGAATGGATATTACTATCTGTTTGCTT
CTACCGGAACTTGTTGTGAAGGATTGAAAAGTACGTATCAGACAGTAGTAGGGCGTTCTAGTTCATTGTGGGGACCTTAT
TTGGATAAACAGGGAAGGTCTATGCTCGATAATAACCATGTGGTATTGATTCATAACAACAAAAGCTTTGTAGGCACAGG
ACATAATGCGGAACTAATAACCGATAAAGCAGATAATGATTGGATTTTATATCATGGAGTGAGTGTTTCCAATCCCTATG
GGAGAGTTTTATTGTTAGATAGAGTTGATTGGAAAAAAGGGTGGCCTGTTGTGAAAAGTAGTTCTGCTTCTACAGAATCC
CCCAAACCTCATTTTTAA

Upstream 100 bases:

>100_bases
TATTTCTGTAAATGAGTAAATAGATTAAGTAAAGCGTGGAATATTACCACATATTTCACGCTTTTACTATATAGATGTGT
CAGATTAAAACAATATAGAG

Downstream 100 bases:

>100_bases
AACGATTTCTTTTTAGATATTGACAGGAGAGATTAAAATAGGTATTATTCCAATATAATTAGTTGTTTTTTTAGGCAGTT
TGAACAGAATTTTTCTTTTA

Product: arabinan endo-1,5-alpha-L-arabinosidase A

Products: NA

Alternate protein names: Endo-1,5-alpha-L-arabinanase; ABN; Endo-arabinanase [H]

Number of amino acids: Translated: 325; Mature: 325

Protein sequence:

>325_residues
MKKLLLIEILLTISFTLMAEDPAKTYKNPVVNYSLPDPSVIRAEDGYFYLYATEDIRNLPIHRSKDLIKWESVGTAFTDE
TRPTFEPKGNLWAPDINKIGDKYVLYYSMSCWGGEWTCGIGVATADKPEGPFVDHGMMFRSNEIGVQNSIDPFYIEDGGR
KYMFWGSFRGIYGIELTADGLKVKSGADKKQIAGTAYEGTYIHKKNGYYYLFASTGTCCEGLKSTYQTVVGRSSSLWGPY
LDKQGRSMLDNNHVVLIHNNKSFVGTGHNAELITDKADNDWILYHGVSVSNPYGRVLLLDRVDWKKGWPVVKSSSASTES
PKPHF

Sequences:

>Translated_325_residues
MKKLLLIEILLTISFTLMAEDPAKTYKNPVVNYSLPDPSVIRAEDGYFYLYATEDIRNLPIHRSKDLIKWESVGTAFTDE
TRPTFEPKGNLWAPDINKIGDKYVLYYSMSCWGGEWTCGIGVATADKPEGPFVDHGMMFRSNEIGVQNSIDPFYIEDGGR
KYMFWGSFRGIYGIELTADGLKVKSGADKKQIAGTAYEGTYIHKKNGYYYLFASTGTCCEGLKSTYQTVVGRSSSLWGPY
LDKQGRSMLDNNHVVLIHNNKSFVGTGHNAELITDKADNDWILYHGVSVSNPYGRVLLLDRVDWKKGWPVVKSSSASTES
PKPHF
>Mature_325_residues
MKKLLLIEILLTISFTLMAEDPAKTYKNPVVNYSLPDPSVIRAEDGYFYLYATEDIRNLPIHRSKDLIKWESVGTAFTDE
TRPTFEPKGNLWAPDINKIGDKYVLYYSMSCWGGEWTCGIGVATADKPEGPFVDHGMMFRSNEIGVQNSIDPFYIEDGGR
KYMFWGSFRGIYGIELTADGLKVKSGADKKQIAGTAYEGTYIHKKNGYYYLFASTGTCCEGLKSTYQTVVGRSSSLWGPY
LDKQGRSMLDNNHVVLIHNNKSFVGTGHNAELITDKADNDWILYHGVSVSNPYGRVLLLDRVDWKKGWPVVKSSSASTES
PKPHF

Specific function: Catalyzes the hydrolysis of the alpha-1,5-linked L- arabinofuranoside backbone. Its preferred substrate is linear 1,5- alpha-L-arabinan. It is also active towards branched sugar beet arabinan, but inactive towards larch wood arabinogalactan, wheat arabino

COG id: COG3507

COG function: function code G; Beta-xylosidase

Gene ontology:

Cell location: Secreted (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 43 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006710
- InterPro:   IPR016840 [H]

Pfam domain/function: PF04616 Glyco_hydro_43 [H]

EC number: =3.2.1.99 [H]

Molecular weight: Translated: 36515; Mature: 36515

Theoretical pI: Translated: 7.23; Mature: 7.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKLLLIEILLTISFTLMAEDPAKTYKNPVVNYSLPDPSVIRAEDGYFYLYATEDIRNLP
CCHHEEEHHHHHEEEEEEECCHHHHHCCCEEEEECCCCCEEEECCCEEEEEECCCCCCCC
IHRSKDLIKWESVGTAFTDETRPTFEPKGNLWAPDINKIGDKYVLYYSMSCWGGEWTCGI
CCCCCCCEEECCCCCEECCCCCCCCCCCCCCCCCCHHHCCCEEEEEEEEECCCCCEEEEE
GVATADKPEGPFVDHGMMFRSNEIGVQNSIDPFYIEDGGRKYMFWGSFRGIYGIELTADG
EEEECCCCCCCCCCCCEEEECCCCCCCCCCCCEEEECCCEEEEEEECCCCEEEEEEEECC
LKVKSGADKKQIAGTAYEGTYIHKKNGYYYLFASTGTCCEGLKSTYQTVVGRSSSLWGPY
EEECCCCCHHHHCCEEECCEEEEECCCEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCC
LDKQGRSMLDNNHVVLIHNNKSFVGTGHNAELITDKADNDWILYHGVSVSNPYGRVLLLD
CCCCCHHHHCCCCEEEEECCCEEEECCCCCEEEEECCCCCEEEEECCCCCCCCCEEEEEE
RVDWKKGWPVVKSSSASTESPKPHF
ECCCCCCCCEEECCCCCCCCCCCCC
>Mature Secondary Structure
MKKLLLIEILLTISFTLMAEDPAKTYKNPVVNYSLPDPSVIRAEDGYFYLYATEDIRNLP
CCHHEEEHHHHHEEEEEEECCHHHHHCCCEEEEECCCCCEEEECCCEEEEEECCCCCCCC
IHRSKDLIKWESVGTAFTDETRPTFEPKGNLWAPDINKIGDKYVLYYSMSCWGGEWTCGI
CCCCCCCEEECCCCCEECCCCCCCCCCCCCCCCCCHHHCCCEEEEEEEEECCCCCEEEEE
GVATADKPEGPFVDHGMMFRSNEIGVQNSIDPFYIEDGGRKYMFWGSFRGIYGIELTADG
EEEECCCCCCCCCCCCEEEECCCCCCCCCCCCEEEECCCEEEEEEECCCCEEEEEEEECC
LKVKSGADKKQIAGTAYEGTYIHKKNGYYYLFASTGTCCEGLKSTYQTVVGRSSSLWGPY
EEECCCCCHHHHCCEEECCEEEEECCCEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCC
LDKQGRSMLDNNHVVLIHNNKSFVGTGHNAELITDKADNDWILYHGVSVSNPYGRVLLLD
CCCCCHHHHCCCCEEEEECCCEEEECCCCCEEEEECCCCCEEEEECCCCCCCCCEEEEEE
RVDWKKGWPVVKSSSASTESPKPHF
ECCCCCCCCEEECCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]