| Definition | Bacteroides thetaiotaomicron VPI-5482 chromosome, complete genome. |
|---|---|
| Accession | NC_004663 |
| Length | 6,260,361 |
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The map label for this gene is 29348308
Identifier: 29348308
GI number: 29348308
Start: 3627234
End: 3629267
Strand: Reverse
Name: 29348308
Synonym: BT_2899
Alternate gene names: NA
Gene position: 3629267-3627234 (Counterclockwise)
Preceding gene: 29348309
Following gene: 29348307
Centisome position: 57.97
GC content: 42.53
Gene sequence:
>2034_bases ATGAATTTAAAATGCTTACTTTGTGGAATAGCTATTTTGGTATGTGTCGGAACCGTAAAGGCTATTGACAATGTGTCGGA ACGTGTATCCGCATCTATTTCTTTGAAAGTGCCGGGAAATGAGGCAAAACAGTACCCGTTGACTTTCCAGAAGACCAAAA ACGACAAAAGCGCTTATCAGTTGGAAGCCTCTGAAAGAATTCCGTTGACAGTTTATCAAACAATAGAAGAAAAAGGCGGA AAATCGCAGATAACAGTATGTATCACTGCATTGGAGGATGTATATTTTAATTACAGTCAACAAGTGTCAACAGGGTTCCG CCATGATGACTGCCAGTTCTACATGCCCGGATTCTGGTATCGCCGTAATCTTCGTTCTCCAAAGTCGGCTCCCTCGTTTC ATACTTCGGATAGTTGGTTGGTGCGTGAAGATAGGTTAAGTACCCCTCTTACAGGTATCTACAGTGAGGGAACCAAACGT TTTATGACCGTAAACCGTATCGATCAGTTCGAGAATGACGCTTTGACTACTCATCGGGAGGGAGAGGTTATTCTTTCCGG TAAAACCTCCCTTGGTTTCACCGGCTTTGAGAATCGTAATGGCATAGCTACACTTTCTTTCGGTTTCCCCTATCAGGAAG CTCCTAAGAGCTATATTCGCAAGCTGACATTGGCCCCGCAGGTAAAGGCTTTTCAGTTGTTGAAAAAAGGTGAAACCGTT TTATTGAACTGGACTATTTATGAAGATGCAGCCGAAGATTACTCGGATTTTATTCGTCATACTTGGGAATATTGTTACGA TACTTATGCTCCAAAGCCAGTTGATACTCCCTATTCAATAGCGGACATGAAAAATACTCTTAGTTCTTTTTTCGTGAATA GCTTGGTGAGTAAACCGGAGTTGACTTACTATTCAGGGGTAGGCTTGCGGACAGATGATTGTAAAAGTAACGGAGAGGCG GAAGTCGGTTTTGTCGGACGTGTTCTTTTGAATGCATTCAATGCTTGGGAATATGGCTGGGAAAGCAATCGGGCAGAACT GAAGGAAAACAGCCTTAAGATTTTTGACAGTTACTTGAAGAATGGCTTTACTGAGGCAGGGTTCTTTAAGGAATTTGTGA ATCTGGATCGTAACTTTGAGGAACCGGTTCATAGTATTCGCCGTCAATCAGAAGGAATCTATGCAATGCTTCATTTCCTG GCATACGAGAAAGAACAAGGACGTCGCCATCCGGAGTGGGAACAACGGATGAAGAAGATGCTTGACATGTTTATGCAATT GCAGAATCAGGATGGTAGTTTTCCACGTAAGTTCCGGGATGATTTTTCTATAGTCGATAAGAGCGGTGGTAGTACTCCTT CGGCTACTCTGCCATTAGTGATGGGATATAAGTATTTTAAAGATAAACGCTATCTGGATAGTGCCAAGAAGACAGCGGAT TATCTGGAAAATGAACTGATTTCGAAAGCAGATTATTTCTCCTCTACACTTGATGCAAACTGTGAAGATAAGGAGGCATC GCTTTATGCTGCAACTGCTACTTACTATTTGGCATTGATAACCAAAGGAGAAGAGCATAAGCATTATGCCGACCTGACGA AAAAAGCTGCATATTTTGCGTTGTCATGGTATTATTTGTGGGATGTACCTTTTGCTCCCGGTCAAATGTTGGGTGATATA GGACTGAAGACACGTGGATGGGGTAATGTGTCCGTAGAGAATAACCATATCGATGTGTTTATCTTTGAGTTTGCTTCCGT GCTTCAGTGGTTGTCTAAAGAATATAAAGAACCTCGTTTTGCAGATTTTGCGGAAGTGATTTCTACGTCTATGCGGCAGT TATTGCCTCACGATGGTCATATGTGCGGCATTGCCAAAGTCGGTTATTATCCGGAAGTTGTTCAACATACGAACTGGGAT TATGGAAGGAACGGAAAAGGATATTATAACGATATCTTTGCACCGGGATGGACGGTAGCCTCTTTGTGGGAGCTATTGAC TCCGGGACGTGCCGAAAAGATGTTGGTTAAGTAA
Upstream 100 bases:
>100_bases AGATTTTATTTTGTAGAACAGACAGAATTAAGATAACAACAAAATTTAATACTAACAGAATCGGAGATTGATTGCTACTG ATTCGCATAATTTGATTTAT
Downstream 100 bases:
>100_bases TTCATCTAATCTGTGATATATATGCTAAAGAAACGATTCTATATTCTACTGTTCTTCTGCCTGCTTCTTGGAGGAAATGT AAATAGCAGTACAGTGGATA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 677; Mature: 677
Protein sequence:
>677_residues MNLKCLLCGIAILVCVGTVKAIDNVSERVSASISLKVPGNEAKQYPLTFQKTKNDKSAYQLEASERIPLTVYQTIEEKGG KSQITVCITALEDVYFNYSQQVSTGFRHDDCQFYMPGFWYRRNLRSPKSAPSFHTSDSWLVREDRLSTPLTGIYSEGTKR FMTVNRIDQFENDALTTHREGEVILSGKTSLGFTGFENRNGIATLSFGFPYQEAPKSYIRKLTLAPQVKAFQLLKKGETV LLNWTIYEDAAEDYSDFIRHTWEYCYDTYAPKPVDTPYSIADMKNTLSSFFVNSLVSKPELTYYSGVGLRTDDCKSNGEA EVGFVGRVLLNAFNAWEYGWESNRAELKENSLKIFDSYLKNGFTEAGFFKEFVNLDRNFEEPVHSIRRQSEGIYAMLHFL AYEKEQGRRHPEWEQRMKKMLDMFMQLQNQDGSFPRKFRDDFSIVDKSGGSTPSATLPLVMGYKYFKDKRYLDSAKKTAD YLENELISKADYFSSTLDANCEDKEASLYAATATYYLALITKGEEHKHYADLTKKAAYFALSWYYLWDVPFAPGQMLGDI GLKTRGWGNVSVENNHIDVFIFEFASVLQWLSKEYKEPRFADFAEVISTSMRQLLPHDGHMCGIAKVGYYPEVVQHTNWD YGRNGKGYYNDIFAPGWTVASLWELLTPGRAEKMLVK
Sequences:
>Translated_677_residues MNLKCLLCGIAILVCVGTVKAIDNVSERVSASISLKVPGNEAKQYPLTFQKTKNDKSAYQLEASERIPLTVYQTIEEKGG KSQITVCITALEDVYFNYSQQVSTGFRHDDCQFYMPGFWYRRNLRSPKSAPSFHTSDSWLVREDRLSTPLTGIYSEGTKR FMTVNRIDQFENDALTTHREGEVILSGKTSLGFTGFENRNGIATLSFGFPYQEAPKSYIRKLTLAPQVKAFQLLKKGETV LLNWTIYEDAAEDYSDFIRHTWEYCYDTYAPKPVDTPYSIADMKNTLSSFFVNSLVSKPELTYYSGVGLRTDDCKSNGEA EVGFVGRVLLNAFNAWEYGWESNRAELKENSLKIFDSYLKNGFTEAGFFKEFVNLDRNFEEPVHSIRRQSEGIYAMLHFL AYEKEQGRRHPEWEQRMKKMLDMFMQLQNQDGSFPRKFRDDFSIVDKSGGSTPSATLPLVMGYKYFKDKRYLDSAKKTAD YLENELISKADYFSSTLDANCEDKEASLYAATATYYLALITKGEEHKHYADLTKKAAYFALSWYYLWDVPFAPGQMLGDI GLKTRGWGNVSVENNHIDVFIFEFASVLQWLSKEYKEPRFADFAEVISTSMRQLLPHDGHMCGIAKVGYYPEVVQHTNWD YGRNGKGYYNDIFAPGWTVASLWELLTPGRAEKMLVK >Mature_677_residues MNLKCLLCGIAILVCVGTVKAIDNVSERVSASISLKVPGNEAKQYPLTFQKTKNDKSAYQLEASERIPLTVYQTIEEKGG KSQITVCITALEDVYFNYSQQVSTGFRHDDCQFYMPGFWYRRNLRSPKSAPSFHTSDSWLVREDRLSTPLTGIYSEGTKR FMTVNRIDQFENDALTTHREGEVILSGKTSLGFTGFENRNGIATLSFGFPYQEAPKSYIRKLTLAPQVKAFQLLKKGETV LLNWTIYEDAAEDYSDFIRHTWEYCYDTYAPKPVDTPYSIADMKNTLSSFFVNSLVSKPELTYYSGVGLRTDDCKSNGEA EVGFVGRVLLNAFNAWEYGWESNRAELKENSLKIFDSYLKNGFTEAGFFKEFVNLDRNFEEPVHSIRRQSEGIYAMLHFL AYEKEQGRRHPEWEQRMKKMLDMFMQLQNQDGSFPRKFRDDFSIVDKSGGSTPSATLPLVMGYKYFKDKRYLDSAKKTAD YLENELISKADYFSSTLDANCEDKEASLYAATATYYLALITKGEEHKHYADLTKKAAYFALSWYYLWDVPFAPGQMLGDI GLKTRGWGNVSVENNHIDVFIFEFASVLQWLSKEYKEPRFADFAEVISTSMRQLLPHDGHMCGIAKVGYYPEVVQHTNWD YGRNGKGYYNDIFAPGWTVASLWELLTPGRAEKMLVK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 77564; Mature: 77564
Theoretical pI: Translated: 6.46; Mature: 6.46
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNLKCLLCGIAILVCVGTVKAIDNVSERVSASISLKVPGNEAKQYPLTFQKTKNDKSAYQ CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCEEEEECCCCCCEEE LEASERIPLTVYQTIEEKGGKSQITVCITALEDVYFNYSQQVSTGFRHDDCQFYMPGFWY EECCCCCCCHHHHHHHHCCCCCEEEEHHHHHHHHHHCCHHHHHCCCCCCCCEEECCCHHH RRNLRSPKSAPSFHTSDSWLVREDRLSTPLTGIYSEGTKRFMTVNRIDQFENDALTTHRE HHCCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHCCCHHHEEHHHHHHHCCCCCCCCCC GEVILSGKTSLGFTGFENRNGIATLSFGFPYQEAPKSYIRKLTLAPQVKAFQLLKKGETV CCEEEECCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCEE LLNWTIYEDAAEDYSDFIRHTWEYCYDTYAPKPVDTPYSIADMKNTLSSFFVNSLVSKPE EEEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC LTYYSGVGLRTDDCKSNGEAEVGFVGRVLLNAFNAWEYGWESNRAELKENSLKIFDSYLK CEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH NGFTEAGFFKEFVNLDRNFEEPVHSIRRQSEGIYAMLHFLAYEKEQGRRHPEWEQRMKKM CCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHH LDMFMQLQNQDGSFPRKFRDDFSIVDKSGGSTPSATLPLVMGYKYFKDKRYLDSAKKTAD HHHHHHHHCCCCCCCHHHCCCHHHEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH YLENELISKADYFSSTLDANCEDKEASLYAATATYYLALITKGEEHKHYADLTKKAAYFA HHHHHHHHHHHHHHHHCCCCCCCCCCCEEEHHHHEEEEEEECCCCHHHHHHHHHHHHHHE LSWYYLWDVPFAPGQMLGDIGLKTRGWGNVSVENNHIDVFIFEFASVLQWLSKEYKEPRF EEEEEEEECCCCCHHHHHHCCCCCCCCCCEEEECCCEEEEHHHHHHHHHHHHHHHCCCCH ADFAEVISTSMRQLLPHDGHMCGIAKVGYYPEVVQHTNWDYGRNGKGYYNDIFAPGWTVA HHHHHHHHHHHHHHCCCCCCEEEEHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCHHH SLWELLTPGRAEKMLVK HHHHHHCCCCCHHCCCC >Mature Secondary Structure MNLKCLLCGIAILVCVGTVKAIDNVSERVSASISLKVPGNEAKQYPLTFQKTKNDKSAYQ CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCEEEEECCCCCCEEE LEASERIPLTVYQTIEEKGGKSQITVCITALEDVYFNYSQQVSTGFRHDDCQFYMPGFWY EECCCCCCCHHHHHHHHCCCCCEEEEHHHHHHHHHHCCHHHHHCCCCCCCCEEECCCHHH RRNLRSPKSAPSFHTSDSWLVREDRLSTPLTGIYSEGTKRFMTVNRIDQFENDALTTHRE HHCCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHCCCHHHEEHHHHHHHCCCCCCCCCC GEVILSGKTSLGFTGFENRNGIATLSFGFPYQEAPKSYIRKLTLAPQVKAFQLLKKGETV CCEEEECCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCEE LLNWTIYEDAAEDYSDFIRHTWEYCYDTYAPKPVDTPYSIADMKNTLSSFFVNSLVSKPE EEEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC LTYYSGVGLRTDDCKSNGEAEVGFVGRVLLNAFNAWEYGWESNRAELKENSLKIFDSYLK CEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH NGFTEAGFFKEFVNLDRNFEEPVHSIRRQSEGIYAMLHFLAYEKEQGRRHPEWEQRMKKM CCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHH LDMFMQLQNQDGSFPRKFRDDFSIVDKSGGSTPSATLPLVMGYKYFKDKRYLDSAKKTAD HHHHHHHHCCCCCCCHHHCCCHHHEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH YLENELISKADYFSSTLDANCEDKEASLYAATATYYLALITKGEEHKHYADLTKKAAYFA HHHHHHHHHHHHHHHHCCCCCCCCCCCEEEHHHHEEEEEEECCCCHHHHHHHHHHHHHHE LSWYYLWDVPFAPGQMLGDIGLKTRGWGNVSVENNHIDVFIFEFASVLQWLSKEYKEPRF EEEEEEEECCCCCHHHHHHCCCCCCCCCCEEEECCCEEEEHHHHHHHHHHHHHHHCCCCH ADFAEVISTSMRQLLPHDGHMCGIAKVGYYPEVVQHTNWDYGRNGKGYYNDIFAPGWTVA HHHHHHHHHHHHHHCCCCCCEEEEHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCHHH SLWELLTPGRAEKMLVK HHHHHHCCCCCHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA