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The map label for this gene is yijO [C]

Identifier: 29348201

GI number: 29348201

Start: 3462290

End: 3463042

Strand: Reverse

Name: yijO [C]

Synonym: BT_2792

Alternate gene names: 29348201

Gene position: 3463042-3462290 (Counterclockwise)

Preceding gene: 29348202

Following gene: 29348199

Centisome position: 55.32

GC content: 42.9

Gene sequence:

>753_bases
ATGCAGGGGCTTGGTTTGATTGTCTGCCGGCAAGGTAGTTTCCAGTTTTCTCTTGATAATAAGTGCGCTTCTGCCAAGGC
GGGTGAGACCTTGTTTATTCATGAGGAATCTTGGGTTCAAGTGCTTCAGGAGACCGAAGATGTGGAAATTCTTATTCTTG
CCTATCAGATAGAACCGATACGTGACATTATCGGCAACTCCGTGGTTTCCATGTATATGTATTCGAAACTTACTCCGGAA
CTCTCTTGTGTATGGAATACCGGCGAGGAAGATGAGATTATGAAGTATATGTCTTTGATAGACAGTGTGCTGGAAATGGA
GGAGAGTGTGTTTAGCCTTTATGAGCAGAAACTCCTTCTGCTGGCACTGACCTATCGTATTTGTTCGGTCTATAACCGTA
AATTGATTAGTGCCGGACAGGAAACGGGCGGGCGGAAAAATGAGATATTTGTCCGTCTCATCCAGTTGATAGAGCAATAT
TATATGCAGGAAAGGAGTGTGGAATTCTATGCGGATAAACTCTGTTTGTCTCCGAAATACCTTTCGGCTCTTTCCAAAAG
CATCTGTGGGTATACGGTGCAGGAACTTGTATTCAAGGCGATTATCCGTAAGTGTATCTCTTTGTTGAAGAATACGCAAA
AAAATATTCAGGAGATTTCCAATGAATTCGGCTTCCCCAATGCTTCTTATTTTGGCACATTCTTCAAGAAGCAAATGGGG
ATGTCGCCGCAGCAATATCGAAGGAATCTTTAA

Upstream 100 bases:

>100_bases
TTTATTACAGCTTGACCGCGATCTGAAAAGCGGGAAGAATATATGCAGTTCGGGAGGTGTGCTCAGTTGTTTTCCATCTT
CTTTAAAAGAACCTTTTCTG

Downstream 100 bases:

>100_bases
TCGATATTACTCTTTTTCTCCATAAGCCAGATCGCCTGCGTCGCCCAGCCCCGGTACAATATAGGAATGTTCATTGATTT
CAGGATCGATGGCAGCACAC

Product: AraC family transcription regulator

Products: NA

Alternate protein names: Transcriptional Regulator AraC Family; AraC Family Transcriptional Regulator; AraC-Type Transcription Regulator; Helix-Turn-Helix Domain-Containing Protein; Transcription Regulator; AraC/XylS Family Transcriptional Regulator; AraC-Family Regulatory Protein; Transcription Regulator AraC-Type; Phosphomethylpyrimidine Kinase; Helix-Turn-Helix- Domain Containing Protein AraC Type; AraC-Type Transcriptional Regulator; AraC Family Transcription Regulator Protein; AraC-Family Transcriptional Regulator; Two Component Transcriptional Regulator AraC Family

Number of amino acids: Translated: 250; Mature: 250

Protein sequence:

>250_residues
MQGLGLIVCRQGSFQFSLDNKCASAKAGETLFIHEESWVQVLQETEDVEILILAYQIEPIRDIIGNSVVSMYMYSKLTPE
LSCVWNTGEEDEIMKYMSLIDSVLEMEESVFSLYEQKLLLLALTYRICSVYNRKLISAGQETGGRKNEIFVRLIQLIEQY
YMQERSVEFYADKLCLSPKYLSALSKSICGYTVQELVFKAIIRKCISLLKNTQKNIQEISNEFGFPNASYFGTFFKKQMG
MSPQQYRRNL

Sequences:

>Translated_250_residues
MQGLGLIVCRQGSFQFSLDNKCASAKAGETLFIHEESWVQVLQETEDVEILILAYQIEPIRDIIGNSVVSMYMYSKLTPE
LSCVWNTGEEDEIMKYMSLIDSVLEMEESVFSLYEQKLLLLALTYRICSVYNRKLISAGQETGGRKNEIFVRLIQLIEQY
YMQERSVEFYADKLCLSPKYLSALSKSICGYTVQELVFKAIIRKCISLLKNTQKNIQEISNEFGFPNASYFGTFFKKQMG
MSPQQYRRNL
>Mature_250_residues
MQGLGLIVCRQGSFQFSLDNKCASAKAGETLFIHEESWVQVLQETEDVEILILAYQIEPIRDIIGNSVVSMYMYSKLTPE
LSCVWNTGEEDEIMKYMSLIDSVLEMEESVFSLYEQKLLLLALTYRICSVYNRKLISAGQETGGRKNEIFVRLIQLIEQY
YMQERSVEFYADKLCLSPKYLSALSKSICGYTVQELVFKAIIRKCISLLKNTQKNIQEISNEFGFPNASYFGTFFKKQMG
MSPQQYRRNL

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 28857; Mature: 28857

Theoretical pI: Translated: 5.19; Mature: 5.19

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
6.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQGLGLIVCRQGSFQFSLDNKCASAKAGETLFIHEESWVQVLQETEDVEILILAYQIEPI
CCCCEEEEEECCCEEEECCCCCCCCCCCCEEEEECHHHHHHHHCCCCCEEEEEEEECCHH
RDIIGNSVVSMYMYSKLTPELSCVWNTGEEDEIMKYMSLIDSVLEMEESVFSLYEQKLLL
HHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LALTYRICSVYNRKLISAGQETGGRKNEIFVRLIQLIEQYYMQERSVEFYADKLCLSPKY
HHHHHHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
LSALSKSICGYTVQELVFKAIIRKCISLLKNTQKNIQEISNEFGFPNASYFGTFFKKQMG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHC
MSPQQYRRNL
CCHHHHHCCC
>Mature Secondary Structure
MQGLGLIVCRQGSFQFSLDNKCASAKAGETLFIHEESWVQVLQETEDVEILILAYQIEPI
CCCCEEEEEECCCEEEECCCCCCCCCCCCEEEEECHHHHHHHHCCCCCEEEEEEEECCHH
RDIIGNSVVSMYMYSKLTPELSCVWNTGEEDEIMKYMSLIDSVLEMEESVFSLYEQKLLL
HHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LALTYRICSVYNRKLISAGQETGGRKNEIFVRLIQLIEQYYMQERSVEFYADKLCLSPKY
HHHHHHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
LSALSKSICGYTVQELVFKAIIRKCISLLKNTQKNIQEISNEFGFPNASYFGTFFKKQMG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHC
MSPQQYRRNL
CCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA