| Definition | Bacteroides thetaiotaomicron VPI-5482 chromosome, complete genome. |
|---|---|
| Accession | NC_004663 |
| Length | 6,260,361 |
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The map label for this gene is 29348202
Identifier: 29348202
GI number: 29348202
Start: 3463202
End: 3464839
Strand: Reverse
Name: 29348202
Synonym: BT_2793
Alternate gene names: NA
Gene position: 3464839-3463202 (Counterclockwise)
Preceding gene: 29348203
Following gene: 29348201
Centisome position: 55.35
GC content: 44.87
Gene sequence:
>1638_bases ATGCCTTCGTGTCCTAGAAATTATCCTTTTTACAATTGGGTGCCCAAACCGATAGGTATTATTATTCTGCTGTTCTTTTT CCTGCCGATTCTTTCGGTGGGCGGGGTATACTCCGTGAACAGTACCGAGATGATGAGCGGCTTGGGTATTATTTCCGAGC ATATTCAGTTTGCCAATTTTGTGACTTCCATCGGTATGGCGGCATTTGCTCCCTTCTTGTATGAACTAGTTTGTATACGA CGGGAGAAACTGATGTGTATCGCAGGTTTTGCACTGATGTATGTATTCAGCTATGTATGTGCCAAAACCGACAGTATCTT TTTGCTGGCACTCTGCAGCCTGCTGACAGGGTTCCTGCGTATGGTACTGATGATGGTCAATCTGTTTACGCTGATCAAAT ATGCTTTTGGCATGGAGGCAACGCGTAATATTACTCCCGGCATGGAACCGAAAGACGCGACGGGATGGAATAAACTGGAT ATCGAAAAATGTATCAGCCAGCCGGTAGTTTATCTGTTTTTTATGATCCTGGGGCAAATGGGTACGGCGCTAACGGCTTG GCTGGCTTTCGAATACGAATGGAAATATGTATATTATTTTATGATGGGTATTCTGCTGCTGTCCATTCTGATACTGTTCA TTACGATGCCTAATCATGGTTTTGCCGGACGTTTCCCTATCAACTTCCGCAAATTCGGCAATGTGACCGCATTTTGCATA TCATTGACGTGCATCACTTATGTGCTGGTTTATGGCAAGGTGCTGGATTGGTATGATGATCCATCTATTTGCTGGGCAAC GGCGATCAGTATCCTTTTTGCCGGGATTTTTCTTTATATGGATGTTACCCGGCGGTCTTCCTACTTTATTTTGGGGGCGT TGAGGCTGCGTACCATTCGTATGGGGGCTTTGCTTTATTTATTGCTGATGATTATCAATTCCAGCGCAATGTTTGTCAAT GTGTATGCAGGAGTCGGGATGCACCTGGATAATTTGCAGAATGCATCGCTGGCAAACTGGTGTATGGTCGGTTATTTTAT CGGTGCCTTGATTTCCATTGTATTGGGGTCTAAAGGGGTGCATCTGAAATATCTTTTTGCTCTTGGCTTTTTCTTTCTGG CATTGTCGGCAGGATTCATGTACTTCGAAGTGCAGACAGCCGGACTTTACGAACGAATGAAGTATCCCGTAATTATTCGT ACCATCGGAATGATGATTTTATATGCATTGACGGCAGCATATGCCAATCAGCGGATGCCTTTCAAATATCTTTCGACCTG GATTTGCATCATGCTTACCGTCCGTATGGTACTGGGACCGGGTATCGGAGGGGCTATTTATTCAAATGTACTGCAGGAGC GCCAGCAACATTATATTACCCGTTATGCACAAAATGTTGATCTGGTAAACCCCGAAGCTTCTGCTTCGTATACCAATACC GTGCAGGGAATGCAATATCAGGGAAAGAGTGAAACGGAAGCGCATAACATGGCTGCCATGTCCGTCAAGGGGCGGATACA GGTGCAGGCTACGCTCTCTGCTGTGAAAGAAATGGCAGGGTGGACTATTTATGCAGGCGTTATTTGTATGATTTTTGTGC TCGTAGTGCCTTATCCCAAACGAAAATTGCTAACTTAG
Upstream 100 bases:
>100_bases GTATCCCTGTCCGTATTGATTTTACGGATTTATCGAAGGAAGATAATGATAAGCTGGCGGCGGGTATGATGGTAGTAGTA AAAGCTAAACTCTGATAGCC
Downstream 100 bases:
>100_bases TATCGTTTTTCAATAGTAATTTATCAGTGAGTCAGTGTTATGGATACTCAGCAGGAACGTTTATTACAGCTTGACCGCGA TCTGAAAAGCGGGAAGAATA
Product: putative MFS transporter
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 545; Mature: 544
Protein sequence:
>545_residues MPSCPRNYPFYNWVPKPIGIIILLFFFLPILSVGGVYSVNSTEMMSGLGIISEHIQFANFVTSIGMAAFAPFLYELVCIR REKLMCIAGFALMYVFSYVCAKTDSIFLLALCSLLTGFLRMVLMMVNLFTLIKYAFGMEATRNITPGMEPKDATGWNKLD IEKCISQPVVYLFFMILGQMGTALTAWLAFEYEWKYVYYFMMGILLLSILILFITMPNHGFAGRFPINFRKFGNVTAFCI SLTCITYVLVYGKVLDWYDDPSICWATAISILFAGIFLYMDVTRRSSYFILGALRLRTIRMGALLYLLLMIINSSAMFVN VYAGVGMHLDNLQNASLANWCMVGYFIGALISIVLGSKGVHLKYLFALGFFFLALSAGFMYFEVQTAGLYERMKYPVIIR TIGMMILYALTAAYANQRMPFKYLSTWICIMLTVRMVLGPGIGGAIYSNVLQERQQHYITRYAQNVDLVNPEASASYTNT VQGMQYQGKSETEAHNMAAMSVKGRIQVQATLSAVKEMAGWTIYAGVICMIFVLVVPYPKRKLLT
Sequences:
>Translated_545_residues MPSCPRNYPFYNWVPKPIGIIILLFFFLPILSVGGVYSVNSTEMMSGLGIISEHIQFANFVTSIGMAAFAPFLYELVCIR REKLMCIAGFALMYVFSYVCAKTDSIFLLALCSLLTGFLRMVLMMVNLFTLIKYAFGMEATRNITPGMEPKDATGWNKLD IEKCISQPVVYLFFMILGQMGTALTAWLAFEYEWKYVYYFMMGILLLSILILFITMPNHGFAGRFPINFRKFGNVTAFCI SLTCITYVLVYGKVLDWYDDPSICWATAISILFAGIFLYMDVTRRSSYFILGALRLRTIRMGALLYLLLMIINSSAMFVN VYAGVGMHLDNLQNASLANWCMVGYFIGALISIVLGSKGVHLKYLFALGFFFLALSAGFMYFEVQTAGLYERMKYPVIIR TIGMMILYALTAAYANQRMPFKYLSTWICIMLTVRMVLGPGIGGAIYSNVLQERQQHYITRYAQNVDLVNPEASASYTNT VQGMQYQGKSETEAHNMAAMSVKGRIQVQATLSAVKEMAGWTIYAGVICMIFVLVVPYPKRKLLT >Mature_544_residues PSCPRNYPFYNWVPKPIGIIILLFFFLPILSVGGVYSVNSTEMMSGLGIISEHIQFANFVTSIGMAAFAPFLYELVCIRR EKLMCIAGFALMYVFSYVCAKTDSIFLLALCSLLTGFLRMVLMMVNLFTLIKYAFGMEATRNITPGMEPKDATGWNKLDI EKCISQPVVYLFFMILGQMGTALTAWLAFEYEWKYVYYFMMGILLLSILILFITMPNHGFAGRFPINFRKFGNVTAFCIS LTCITYVLVYGKVLDWYDDPSICWATAISILFAGIFLYMDVTRRSSYFILGALRLRTIRMGALLYLLLMIINSSAMFVNV YAGVGMHLDNLQNASLANWCMVGYFIGALISIVLGSKGVHLKYLFALGFFFLALSAGFMYFEVQTAGLYERMKYPVIIRT IGMMILYALTAAYANQRMPFKYLSTWICIMLTVRMVLGPGIGGAIYSNVLQERQQHYITRYAQNVDLVNPEASASYTNTV QGMQYQGKSETEAHNMAAMSVKGRIQVQATLSAVKEMAGWTIYAGVICMIFVLVVPYPKRKLLT
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 61485; Mature: 61354
Theoretical pI: Translated: 9.12; Mature: 9.12
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 6.2 %Met (Translated Protein) 8.4 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 6.1 %Met (Mature Protein) 8.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPSCPRNYPFYNWVPKPIGIIILLFFFLPILSVGGVYSVNSTEMMSGLGIISEHIQFANF CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEECCHHHHHHHHHHHHHHHHHHHH VTSIGMAAFAPFLYELVCIRREKLMCIAGFALMYVFSYVCAKTDSIFLLALCSLLTGFLR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH MVLMMVNLFTLIKYAFGMEATRNITPGMEPKDATGWNKLDIEKCISQPVVYLFFMILGQM HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHH GTALTAWLAFEYEWKYVYYFMMGILLLSILILFITMPNHGFAGRFPINFRKFGNVTAFCI HHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCHHHHHH SLTCITYVLVYGKVLDWYDDPSICWATAISILFAGIFLYMDVTRRSSYFILGALRLRTIR HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHH MGALLYLLLMIINSSAMFVNVYAGVGMHLDNLQNASLANWCMVGYFIGALISIVLGSKGV HHHHHHHHHHHHCCCHHEEEEHHCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC HLKYLFALGFFFLALSAGFMYFEVQTAGLYERMKYPVIIRTIGMMILYALTAAYANQRMP HHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCC FKYLSTWICIMLTVRMVLGPGIGGAIYSNVLQERQQHYITRYAQNVDLVNPEASASYTNT HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHH VQGMQYQGKSETEAHNMAAMSVKGRIQVQATLSAVKEMAGWTIYAGVICMIFVLVVPYPK HCCCCCCCCCCCHHHHHHHEEECCCEEHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCC RKLLT HHCCC >Mature Secondary Structure PSCPRNYPFYNWVPKPIGIIILLFFFLPILSVGGVYSVNSTEMMSGLGIISEHIQFANF CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEECCHHHHHHHHHHHHHHHHHHHH VTSIGMAAFAPFLYELVCIRREKLMCIAGFALMYVFSYVCAKTDSIFLLALCSLLTGFLR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH MVLMMVNLFTLIKYAFGMEATRNITPGMEPKDATGWNKLDIEKCISQPVVYLFFMILGQM HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHH GTALTAWLAFEYEWKYVYYFMMGILLLSILILFITMPNHGFAGRFPINFRKFGNVTAFCI HHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCHHHHHH SLTCITYVLVYGKVLDWYDDPSICWATAISILFAGIFLYMDVTRRSSYFILGALRLRTIR HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHH MGALLYLLLMIINSSAMFVNVYAGVGMHLDNLQNASLANWCMVGYFIGALISIVLGSKGV HHHHHHHHHHHHCCCHHEEEEHHCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC HLKYLFALGFFFLALSAGFMYFEVQTAGLYERMKYPVIIRTIGMMILYALTAAYANQRMP HHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCC FKYLSTWICIMLTVRMVLGPGIGGAIYSNVLQERQQHYITRYAQNVDLVNPEASASYTNT HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHH VQGMQYQGKSETEAHNMAAMSVKGRIQVQATLSAVKEMAGWTIYAGVICMIFVLVVPYPK HCCCCCCCCCCCHHHHHHHEEECCCEEHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCC RKLLT HHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA