Click here to switch to the map view.

The map label for this gene is ykfC [H]

Identifier: 29347865

GI number: 29347865

Start: 3071356

End: 3072045

Strand: Reverse

Name: ykfC [H]

Synonym: BT_2455

Alternate gene names: 29347865

Gene position: 3072045-3071356 (Counterclockwise)

Preceding gene: 29347866

Following gene: 29347859

Centisome position: 49.07

GC content: 42.17

Gene sequence:

>690_bases
TTGCTCCAAGTGTGCTGTTATACAAGCGAAGGCTACAAATATGCTGTAGGCATAGACCTTGTTAGATTCTTTGATACGGT
AAACCATAGTTTCTTACTGAGAATACTATCAAGGACAATAAATGACGGGCGTGTCATTTCTCTTATACACAAGTATCTTA
CAAGCGGAGTAATGATAGGTAAGCATTATGAACCAAGTATAGAGGGTACACCACAAGGCGCCCCTTTGAGCCCCTTGCTC
AGCAATATCCTGCTGAACGAACTAGACAAGGAATTGGAGAGACGTGGACACTGCTTTGTACGCTATGCAGATGATAGCAT
GATACTGTGCAAAAGTAAGAGGTCCGCCGAACGCGTATGCTCAAGCATAACGGACTTTTCCTTCTATTTCACGAAAGGCA
AATGCAGGCTGTGTGTTCACAAGACAACAAAAGAGAAATTCAAACGTAAGGTTAAATCTCTTACCAGACGTAGTAACAGC
ATGGGTTATGCCCAACGTAAAGAGATACTCTGGCAAACCTTTAGAGGTTGGATAGGGTATTTCAAATATGCAGACATGAG
GAGTCTGCTGATTCCATTAGACCAATGGTATCGCAGACACTTGCGTATGTGTATATGGAAATGTTGGAAGAGAGTGAAGA
CTCGCTTTTCAAATTTGCAGAAATGTGGAATACCGAAAGGTAAGGCTTAG

Upstream 100 bases:

>100_bases
TGATACAACAAGCCATCGTCCAAGTGCTATCGCCTATCTACGAACGCCAGTTCAGCCCAAGCAGTTTTGGGTTTCGCCCC
GACGTAGTGCGCATGTAGCA

Downstream 100 bases:

>100_bases
GAGTGGGCAAATACTCGGAAAGGGTATTGGCGTTGTACGCGTGCCTTTCTTCAGAATGCTATTGAGGACGAGTCTCTTCG
GAAAGCGGGGTATCCAATGT

Product: reverse transcriptase/maturase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 229; Mature: 229

Protein sequence:

>229_residues
MLQVCCYTSEGYKYAVGIDLVRFFDTVNHSFLLRILSRTINDGRVISLIHKYLTSGVMIGKHYEPSIEGTPQGAPLSPLL
SNILLNELDKELERRGHCFVRYADDSMILCKSKRSAERVCSSITDFSFYFTKGKCRLCVHKTTKEKFKRKVKSLTRRSNS
MGYAQRKEILWQTFRGWIGYFKYADMRSLLIPLDQWYRRHLRMCIWKCWKRVKTRFSNLQKCGIPKGKA

Sequences:

>Translated_229_residues
MLQVCCYTSEGYKYAVGIDLVRFFDTVNHSFLLRILSRTINDGRVISLIHKYLTSGVMIGKHYEPSIEGTPQGAPLSPLL
SNILLNELDKELERRGHCFVRYADDSMILCKSKRSAERVCSSITDFSFYFTKGKCRLCVHKTTKEKFKRKVKSLTRRSNS
MGYAQRKEILWQTFRGWIGYFKYADMRSLLIPLDQWYRRHLRMCIWKCWKRVKTRFSNLQKCGIPKGKA
>Mature_229_residues
MLQVCCYTSEGYKYAVGIDLVRFFDTVNHSFLLRILSRTINDGRVISLIHKYLTSGVMIGKHYEPSIEGTPQGAPLSPLL
SNILLNELDKELERRGHCFVRYADDSMILCKSKRSAERVCSSITDFSFYFTKGKCRLCVHKTTKEKFKRKVKSLTRRSNS
MGYAQRKEILWQTFRGWIGYFKYADMRSLLIPLDQWYRRHLRMCIWKCWKRVKTRFSNLQKCGIPKGKA

Specific function: Unknown

COG id: COG3344

COG function: function code L; Retron-type reverse transcriptase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 reverse transcriptase domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015706
- InterPro:   IPR000477 [H]

Pfam domain/function: PF00078 RVT_1 [H]

EC number: NA

Molecular weight: Translated: 26893; Mature: 26893

Theoretical pI: Translated: 10.42; Mature: 10.42

Prosite motif: PS50878 RT_POL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.4 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
7.0 %Cys+Met (Translated Protein)
4.4 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
7.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLQVCCYTSEGYKYAVGIDLVRFFDTVNHSFLLRILSRTINDGRVISLIHKYLTSGVMIG
CCEEEEEECCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCEEEC
KHYEPSIEGTPQGAPLSPLLSNILLNELDKELERRGHCFVRYADDSMILCKSKRSAERVC
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCEEEECCHHHHHHHH
SSITDFSFYFTKGKCRLCVHKTTKEKFKRKVKSLTRRSNSMGYAQRKEILWQTFRGWIGY
HHHHHHHEEEECCCEEEEEEHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
FKYADMRSLLIPLDQWYRRHLRMCIWKCWKRVKTRFSNLQKCGIPKGKA
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MLQVCCYTSEGYKYAVGIDLVRFFDTVNHSFLLRILSRTINDGRVISLIHKYLTSGVMIG
CCEEEEEECCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCEEEC
KHYEPSIEGTPQGAPLSPLLSNILLNELDKELERRGHCFVRYADDSMILCKSKRSAERVC
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCEEEECCHHHHHHHH
SSITDFSFYFTKGKCRLCVHKTTKEKFKRKVKSLTRRSNSMGYAQRKEILWQTFRGWIGY
HHHHHHHEEEECCCEEEEEEHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
FKYADMRSLLIPLDQWYRRHLRMCIWKCWKRVKTRFSNLQKCGIPKGKA
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]