| Definition | Bacteroides thetaiotaomicron VPI-5482 chromosome, complete genome. |
|---|---|
| Accession | NC_004663 |
| Length | 6,260,361 |
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The map label for this gene is 29346776
Identifier: 29346776
GI number: 29346776
Start: 1694426
End: 1696003
Strand: Reverse
Name: 29346776
Synonym: BT_1366
Alternate gene names: NA
Gene position: 1696003-1694426 (Counterclockwise)
Preceding gene: 29346777
Following gene: 29346774
Centisome position: 27.09
GC content: 46.7
Gene sequence:
>1578_bases ATGAAACTTCGTACGATAGTGAAAATAGCGATCACTTCTTCTGTTGTACTTTTGTGCTCAGGTTTTGCGTTGTACTCTTT TTTTAGGTTGTCGGCTGCCGAAGATCAGAAAGATTTTGATCTCTATACCTTGGTTCCGTCCTCTGTTTCAGCAGTGTTTG CGACGGAAGATGTAGCCGAATTTGTAATGGAAGTGGATGAGCTGACCTGTAGTCGGGATCACCAGTATCTTTATGTTTCC AAACTCTTTTCTTATCTGAAACAATATCTTTATTCTCTTCTCGAAGATGCTCCTCACGGTCTGAGCAGGCAAATGAATCA GATGCTGATCAGTTTCCATGAGCCGGACAATGATCGTAATCAGGTGCTTTACTGCCGGTTGGGGAATGGAGACCGTGCGC TGATCGACCGTTTTGTGCAGAAATATGTTTCGTCGGGCTATCCTCCGAAAACATTCGATTATAAGGGTGAAGATATCATT ATCTATCCGATGGCGGACGGTGATTTTCTCGCCTGCTATCTGACGGAAGACTTTCTGGTGCTCAGTTGTCAGAAAAAGCT GATAGAGGAGGTGATAGATATCCGCAAAACCGGCAAGTCGCTGGCTGCCGACTCTGCTTTTAAAGAAGTGCGGGCGCCGA AGAAAAGTCCGACTGTTGCTACCGTCTACACTCGTCTGGCAGGAATGATGGGATGGACGGAGTTTGATATGAAGCTGAAG GATGATTTCATTTATTTCTCCGGAGTCAGCCATTATGTAGATACTTGTTTTAACTTTATAAATGTAATCCGCCAGCAGGA ATCTGTCAAAGGATTTCCGGGCGAGACACTGCCTTCCACTGCTTTTTATTTCAGTAAACAGGGCATTACGGACTGGGCAT CCCTGCTTTCCTATGGCGGTACGCAGGAATATGCGACGGCAGGCAGAACGAGTGAAGTGCTGAATCGGGATCGGGAATTG TCACGTTATCTGGCAGAGAATACGGGGCAGGATTTGGTGGCTTGTCTTTTCCAGCGGGAAGACTCTCTGATGGGGCCTGC GGCTGTTTTAAGTCTCTCGGTGATGGATGTGGCTGAGGCGGAAAGGATGTTGCGCTCTTTGGTAAATACGGCTCCGGCAG AGGAAGGAACAGGCCGGAATTCACGTATAACTTTTTGTTATACTCCCTCTAAAGCATACCCTGTGTACAGGTTGCCTCAA ACAACGTTGTTTACGCAACTAACCAGTTTTGTAGAGCCGTCCTTGCATGTTTTCGCTACATTTTATGGCGGACGTTTACT GCTTGCCCCCGATGAAGATAGTTTGTCACGATATATCCGCCAGCTGGATAATGACGAAGTGCTTGACGGCGCTTTGGCTT ATCGGGCGGGGACGGACGGATTGTCCGATTCGTATCATTTCATGTTGATGGCGGACTTTGGACACGTACTCGAACAGTCC GGACATCAGGTTCATTATGTGCCGGAATTCTTTCTCCGCAACTCCGAATTTTTCCGTAATTTCATTCTTTTTGCGCAGTT TACTTGTGCGGACGGGGTGGTTTATCCCAACATTGTTTTGAAGTATAAATCCGAATAG
Upstream 100 bases:
>100_bases TGGAAATCATTTTCTGATTATTGGTGATTTTTTTAGCAAAAGTTTTGTTTTCTTTGTAGAAATTATTATTTTTGCCCCTA GCCGATAAACAGCAAATATT
Downstream 100 bases:
>100_bases AATTCGATGAAAAAAACAGGCGAAAAATAGAGGGGAAAAACAACTCTTAATTTGTGAAACTAAAAGCTCTGAAACGCCTT CTGGCAGGGCGCGAAAACCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 525; Mature: 525
Protein sequence:
>525_residues MKLRTIVKIAITSSVVLLCSGFALYSFFRLSAAEDQKDFDLYTLVPSSVSAVFATEDVAEFVMEVDELTCSRDHQYLYVS KLFSYLKQYLYSLLEDAPHGLSRQMNQMLISFHEPDNDRNQVLYCRLGNGDRALIDRFVQKYVSSGYPPKTFDYKGEDII IYPMADGDFLACYLTEDFLVLSCQKKLIEEVIDIRKTGKSLAADSAFKEVRAPKKSPTVATVYTRLAGMMGWTEFDMKLK DDFIYFSGVSHYVDTCFNFINVIRQQESVKGFPGETLPSTAFYFSKQGITDWASLLSYGGTQEYATAGRTSEVLNRDREL SRYLAENTGQDLVACLFQREDSLMGPAAVLSLSVMDVAEAERMLRSLVNTAPAEEGTGRNSRITFCYTPSKAYPVYRLPQ TTLFTQLTSFVEPSLHVFATFYGGRLLLAPDEDSLSRYIRQLDNDEVLDGALAYRAGTDGLSDSYHFMLMADFGHVLEQS GHQVHYVPEFFLRNSEFFRNFILFAQFTCADGVVYPNIVLKYKSE
Sequences:
>Translated_525_residues MKLRTIVKIAITSSVVLLCSGFALYSFFRLSAAEDQKDFDLYTLVPSSVSAVFATEDVAEFVMEVDELTCSRDHQYLYVS KLFSYLKQYLYSLLEDAPHGLSRQMNQMLISFHEPDNDRNQVLYCRLGNGDRALIDRFVQKYVSSGYPPKTFDYKGEDII IYPMADGDFLACYLTEDFLVLSCQKKLIEEVIDIRKTGKSLAADSAFKEVRAPKKSPTVATVYTRLAGMMGWTEFDMKLK DDFIYFSGVSHYVDTCFNFINVIRQQESVKGFPGETLPSTAFYFSKQGITDWASLLSYGGTQEYATAGRTSEVLNRDREL SRYLAENTGQDLVACLFQREDSLMGPAAVLSLSVMDVAEAERMLRSLVNTAPAEEGTGRNSRITFCYTPSKAYPVYRLPQ TTLFTQLTSFVEPSLHVFATFYGGRLLLAPDEDSLSRYIRQLDNDEVLDGALAYRAGTDGLSDSYHFMLMADFGHVLEQS GHQVHYVPEFFLRNSEFFRNFILFAQFTCADGVVYPNIVLKYKSE >Mature_525_residues MKLRTIVKIAITSSVVLLCSGFALYSFFRLSAAEDQKDFDLYTLVPSSVSAVFATEDVAEFVMEVDELTCSRDHQYLYVS KLFSYLKQYLYSLLEDAPHGLSRQMNQMLISFHEPDNDRNQVLYCRLGNGDRALIDRFVQKYVSSGYPPKTFDYKGEDII IYPMADGDFLACYLTEDFLVLSCQKKLIEEVIDIRKTGKSLAADSAFKEVRAPKKSPTVATVYTRLAGMMGWTEFDMKLK DDFIYFSGVSHYVDTCFNFINVIRQQESVKGFPGETLPSTAFYFSKQGITDWASLLSYGGTQEYATAGRTSEVLNRDREL SRYLAENTGQDLVACLFQREDSLMGPAAVLSLSVMDVAEAERMLRSLVNTAPAEEGTGRNSRITFCYTPSKAYPVYRLPQ TTLFTQLTSFVEPSLHVFATFYGGRLLLAPDEDSLSRYIRQLDNDEVLDGALAYRAGTDGLSDSYHFMLMADFGHVLEQS GHQVHYVPEFFLRNSEFFRNFILFAQFTCADGVVYPNIVLKYKSE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 59485; Mature: 59485
Theoretical pI: Translated: 4.86; Mature: 4.86
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKLRTIVKIAITSSVVLLCSGFALYSFFRLSAAEDQKDFDLYTLVPSSVSAVFATEDVAE CCCHHEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHH FVMEVDELTCSRDHQYLYVSKLFSYLKQYLYSLLEDAPHGLSRQMNQMLISFHEPDNDRN HHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHEEECCCCCCCC QVLYCRLGNGDRALIDRFVQKYVSSGYPPKTFDYKGEDIIIYPMADGDFLACYLTEDFLV EEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCHHH LSCQKKLIEEVIDIRKTGKSLAADSAFKEVRAPKKSPTVATVYTRLAGMMGWTEFDMKLK HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHCCCEEC DDFIYFSGVSHYVDTCFNFINVIRQQESVKGFPGETLPSTAFYFSKQGITDWASLLSYGG CCEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHEECCCHHHHHHHHHCCC TQEYATAGRTSEVLNRDRELSRYLAENTGQDLVACLFQREDSLMGPAAVLSLSVMDVAEA CHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH ERMLRSLVNTAPAEEGTGRNSRITFCYTPSKAYPVYRLPQTTLFTQLTSFVEPSLHVFAT HHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCEEECCHHHHHHHHHHHHCCCHHEEEE FYGGRLLLAPDEDSLSRYIRQLDNDEVLDGALAYRAGTDGLSDSYHFMLMADFGHVLEQS EECCEEEEECCHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCEEEEEEHHHHHHHHHC GHQVHYVPEFFLRNSEFFRNFILFAQFTCADGVVYPNIVLKYKSE CCEEEECHHHHHCCHHHHHHHHHHHEEHHCCCEEECCEEEEECCC >Mature Secondary Structure MKLRTIVKIAITSSVVLLCSGFALYSFFRLSAAEDQKDFDLYTLVPSSVSAVFATEDVAE CCCHHEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHH FVMEVDELTCSRDHQYLYVSKLFSYLKQYLYSLLEDAPHGLSRQMNQMLISFHEPDNDRN HHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHEEECCCCCCCC QVLYCRLGNGDRALIDRFVQKYVSSGYPPKTFDYKGEDIIIYPMADGDFLACYLTEDFLV EEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCHHH LSCQKKLIEEVIDIRKTGKSLAADSAFKEVRAPKKSPTVATVYTRLAGMMGWTEFDMKLK HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHCCCEEC DDFIYFSGVSHYVDTCFNFINVIRQQESVKGFPGETLPSTAFYFSKQGITDWASLLSYGG CCEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHEECCCHHHHHHHHHCCC TQEYATAGRTSEVLNRDRELSRYLAENTGQDLVACLFQREDSLMGPAAVLSLSVMDVAEA CHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH ERMLRSLVNTAPAEEGTGRNSRITFCYTPSKAYPVYRLPQTTLFTQLTSFVEPSLHVFAT HHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCEEECCHHHHHHHHHHHHCCCHHEEEE FYGGRLLLAPDEDSLSRYIRQLDNDEVLDGALAYRAGTDGLSDSYHFMLMADFGHVLEQS EECCEEEEECCHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCEEEEEEHHHHHHHHHC GHQVHYVPEFFLRNSEFFRNFILFAQFTCADGVVYPNIVLKYKSE CCEEEECHHHHHCCHHHHHHHHHHHEEHHCCCEEECCEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA