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The map label for this gene is 29346357

Identifier: 29346357

GI number: 29346357

Start: 1156037

End: 1156624

Strand: Reverse

Name: 29346357

Synonym: BT_0947

Alternate gene names: NA

Gene position: 1156624-1156037 (Counterclockwise)

Preceding gene: 29346358

Following gene: 29346355

Centisome position: 18.48

GC content: 34.52

Gene sequence:

>588_bases
ATGTCACTTAAATATTCAAGTACAACAGCAGATTATCTGCAATGGAGCGAAGCAATGAACTTAATAAGAAAGTTGGCAAG
GGATAGTAATTATAAGATGTCACTTCTTATTGCTTTAGGTTGCTTCACAGGTCTAAGAATTTCTGATATTCTTGCTTTGA
GGTGGAATCAGATACTAGATGCAGAAGAATTTACCATTATAGAGATTAAGACAGGAAAGCAAAGGACAATTAGGATTAAT
ATGCAGCTACAGCAACATATCAGAGATTGTTATGAGCATATAAATCCAGTTGGTATAAATGCTCCTGTATTGATAAGTCA
GAAGGGGACAGTGTACACAGTTCAGAGAATCAATGTCATGCTGAAAGAGATTAAAAAGAAATACAAGCTACAAATAGGCA
ATTTTTCGTGTCATTCTCTTAGAAAGACTTTTGGCAGACAGGTTTATAATATGAACAGTGATAATTCGGAGCTTGCACTT
GTTAAGCTCATGGAGTTATTCAATCATTCCAGTGTATCAATTACTAAAAGATACTTGGGATTGAGGCAAGAGGAATTATT
AAATACTTATGACTGTCTTAGCTTCTGA

Upstream 100 bases:

>100_bases
TTCTGTTATTAGTGAATGTTTAGCTAATAATCAGTAAGTTAGATATTCCAACTCAAAATTAATATTCACTTTTATTAGTT
TCACTATAAAACAGAACGTT

Downstream 100 bases:

>100_bases
CTAAACATAAGTAGGATATATTAAGAGGTTTAAATACAAACTCTTAATGTCCTACTTATAACCTAATATGTCTCACTTCA
TCAACATAAATATCATACAA

Product: integrase

Products: NA

Alternate protein names: Integrase; Tyrosine Type Site-Specific Recombinase; Phage Integrase; Site-Specific Recombinase Phage Integrase Family; Phage Integrase Family Protein; Integrase/Recombinase; Site-Specific Recombinase; Phage Integrase Family Site Specific Recombinase; Prophage; DNA Integration/Recombination/Invertion Protein; Tyrosine Recombinase XerD; Site-Specific Recombinase/Integrase XerD; LOW QUALITY PROTEIN Integrase

Number of amino acids: Translated: 195; Mature: 194

Protein sequence:

>195_residues
MSLKYSSTTADYLQWSEAMNLIRKLARDSNYKMSLLIALGCFTGLRISDILALRWNQILDAEEFTIIEIKTGKQRTIRIN
MQLQQHIRDCYEHINPVGINAPVLISQKGTVYTVQRINVMLKEIKKKYKLQIGNFSCHSLRKTFGRQVYNMNSDNSELAL
VKLMELFNHSSVSITKRYLGLRQEELLNTYDCLSF

Sequences:

>Translated_195_residues
MSLKYSSTTADYLQWSEAMNLIRKLARDSNYKMSLLIALGCFTGLRISDILALRWNQILDAEEFTIIEIKTGKQRTIRIN
MQLQQHIRDCYEHINPVGINAPVLISQKGTVYTVQRINVMLKEIKKKYKLQIGNFSCHSLRKTFGRQVYNMNSDNSELAL
VKLMELFNHSSVSITKRYLGLRQEELLNTYDCLSF
>Mature_194_residues
SLKYSSTTADYLQWSEAMNLIRKLARDSNYKMSLLIALGCFTGLRISDILALRWNQILDAEEFTIIEIKTGKQRTIRINM
QLQQHIRDCYEHINPVGINAPVLISQKGTVYTVQRINVMLKEIKKKYKLQIGNFSCHSLRKTFGRQVYNMNSDNSELALV
KLMELFNHSSVSITKRYLGLRQEELLNTYDCLSF

Specific function: Unknown

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22664; Mature: 22533

Theoretical pI: Translated: 9.79; Mature: 9.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLKYSSTTADYLQWSEAMNLIRKLARDSNYKMSLLIALGCFTGLRISDILALRWNQILD
CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCC
AEEFTIIEIKTGKQRTIRINMQLQQHIRDCYEHINPVGINAPVLISQKGTVYTVQRINVM
CCCEEEEEEECCCCEEEEEEHHHHHHHHHHHHHCCCCCCCCCEEEECCCCEEEHHHHHHH
LKEIKKKYKLQIGNFSCHSLRKTFGRQVYNMNSDNSELALVKLMELFNHSSVSITKRYLG
HHHHHHHHCEECCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHC
LRQEELLNTYDCLSF
CCHHHHHHHHHHCCC
>Mature Secondary Structure 
SLKYSSTTADYLQWSEAMNLIRKLARDSNYKMSLLIALGCFTGLRISDILALRWNQILD
CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCC
AEEFTIIEIKTGKQRTIRINMQLQQHIRDCYEHINPVGINAPVLISQKGTVYTVQRINVM
CCCEEEEEEECCCCEEEEEEHHHHHHHHHHHHHCCCCCCCCCEEEECCCCEEEHHHHHHH
LKEIKKKYKLQIGNFSCHSLRKTFGRQVYNMNSDNSELALVKLMELFNHSSVSITKRYLG
HHHHHHHHCEECCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHC
LRQEELLNTYDCLSF
CCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA