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The map label for this gene is yiaR [H]

Identifier: 29144122

GI number: 29144122

Start: 3969621

End: 3970481

Strand: Reverse

Name: yiaR [H]

Synonym: t3843

Alternate gene names: 29144122

Gene position: 3970481-3969621 (Counterclockwise)

Preceding gene: 29144123

Following gene: 29144121

Centisome position: 82.86

GC content: 57.96

Gene sequence:

>861_bases
ATGCGTAATCATCCATTAGGTATTTACGAGAAAGCACTGGCGAAAGATCTCAGTTGGCCAGAGCGGCTGGTGCTGGCAAA
AAGCTGCGGTTTTGATTTTGTTGAGATGTCGGTGGATGAAACCGACGAACGTCTCTCACGCCTGGAGTGGACCTCGGCCC
AACGCGCTTCGCTGGTGAACGCGATGCTGGAAAGCGGCGTCGCCATCCCGTCGATGTGCCTCTCCGCCCATCGTCGCTTC
CCTTTTGGCAGCCGCGACGAAGCGGTACGCCAGCGGGCGCGTGAAATCATGACCAAAGCCATTCGCCTGGCGCGCGACCT
GGGGATCCGCACCATCCAGTTGGCAGGTTACGACGTCTATTACGAAGAGCACGACGAAGGCACCCAGCAACGTTTCGCCG
AAGGGCTGGCGTGGGCGGTGGAACAGGCCGCAGCGGCGCAGGTGATGCTGGCGGTGGAGATCATGGATACCGCGTTTATG
AACTCCATCAGCAAGTGGAAAAAGTGGGACGAGATGCTTTCGTCACCGTGGTTCACCGTTTATCCAGACGTCGGCAACCT
CAGCGCCTGGGGGAACGACGTGACCGCCGAGCTGAAGCTGGGTATCGACCGTATCGCCGCGATCCACCTGAAAGACACGC
TGCCGGTGACCGGTGACAACCCCGGCCAGTTCCGCGACGTGCCGTTTGGCGAAGGATGCGTTGATTTTGTCAGCATCTTC
AAAACGCTGCATGAGCTGAACTATCGCGGTTCATTTCTGATTGAGATGTGGACAGAGAAAGCCAGCGAGCCGGTGCTGGA
AATTATCCAGGCCCGCCGCTGGATTGAATCACGGATGCAGGAAGGAGGTTTCACATGTTAG

Upstream 100 bases:

>100_bases
AAGGCATTTATCGCCGGACGTGCGCTGGCAGGTGCCGCCCATCCGGCGCAGGTCGCCGCCGAATTCCACGCCCAAATTGA
CGCCATTTGGGGAGAAAAGC

Downstream 100 bases:

>100_bases
AGCAACTGAAAGCCGAGGTGCTGGCGGCCAACCTGGCCCTCCCGGCGCACGGGCTGGTCACCTTTACCTGGGGCAACGTC
AGCGCGGTCGATGAGACGCG

Product: L-xylulose 5-phosphate 3-epimerase

Products: NA

Alternate protein names: L-xylulose-5-phosphate 3-epimerase [H]

Number of amino acids: Translated: 286; Mature: 286

Protein sequence:

>286_residues
MRNHPLGIYEKALAKDLSWPERLVLAKSCGFDFVEMSVDETDERLSRLEWTSAQRASLVNAMLESGVAIPSMCLSAHRRF
PFGSRDEAVRQRAREIMTKAIRLARDLGIRTIQLAGYDVYYEEHDEGTQQRFAEGLAWAVEQAAAAQVMLAVEIMDTAFM
NSISKWKKWDEMLSSPWFTVYPDVGNLSAWGNDVTAELKLGIDRIAAIHLKDTLPVTGDNPGQFRDVPFGEGCVDFVSIF
KTLHELNYRGSFLIEMWTEKASEPVLEIIQARRWIESRMQEGGFTC

Sequences:

>Translated_286_residues
MRNHPLGIYEKALAKDLSWPERLVLAKSCGFDFVEMSVDETDERLSRLEWTSAQRASLVNAMLESGVAIPSMCLSAHRRF
PFGSRDEAVRQRAREIMTKAIRLARDLGIRTIQLAGYDVYYEEHDEGTQQRFAEGLAWAVEQAAAAQVMLAVEIMDTAFM
NSISKWKKWDEMLSSPWFTVYPDVGNLSAWGNDVTAELKLGIDRIAAIHLKDTLPVTGDNPGQFRDVPFGEGCVDFVSIF
KTLHELNYRGSFLIEMWTEKASEPVLEIIQARRWIESRMQEGGFTC
>Mature_286_residues
MRNHPLGIYEKALAKDLSWPERLVLAKSCGFDFVEMSVDETDERLSRLEWTSAQRASLVNAMLESGVAIPSMCLSAHRRF
PFGSRDEAVRQRAREIMTKAIRLARDLGIRTIQLAGYDVYYEEHDEGTQQRFAEGLAWAVEQAAAAQVMLAVEIMDTAFM
NSISKWKKWDEMLSSPWFTVYPDVGNLSAWGNDVTAELKLGIDRIAAIHLKDTLPVTGDNPGQFRDVPFGEGCVDFVSIF
KTLHELNYRGSFLIEMWTEKASEPVLEIIQARRWIESRMQEGGFTC

Specific function: Catalyzes the isomerization of L-xylulose-5-phosphate to L-ribulose-5-phosphate (Potential). May be involved in the utilization of 2,3-diketo-L-gulonate [H]

COG id: COG3623

COG function: function code G; Putative L-xylulose-5-phosphate 3-epimerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the HUMPI family [H]

Homologues:

Organism=Escherichia coli, GI87082294, Length=286, Percent_Identity=91.2587412587413, Blast_Score=550, Evalue=1e-158,
Organism=Escherichia coli, GI1790641, Length=281, Percent_Identity=58.3629893238434, Blast_Score=339, Evalue=1e-94,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004560
- InterPro:   IPR013022
- InterPro:   IPR012307 [H]

Pfam domain/function: PF01261 AP_endonuc_2 [H]

EC number: =5.1.3.22 [H]

Molecular weight: Translated: 32463; Mature: 32463

Theoretical pI: Translated: 4.89; Mature: 4.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNHPLGIYEKALAKDLSWPERLVLAKSCGFDFVEMSVDETDERLSRLEWTSAQRASLVN
CCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHH
AMLESGVAIPSMCLSAHRRFPFGSRDEAVRQRAREIMTKAIRLARDLGIRTIQLAGYDVY
HHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEEE
YEEHDEGTQQRFAEGLAWAVEQAAAAQVMLAVEIMDTAFMNSISKWKKWDEMLSSPWFTV
ECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
YPDVGNLSAWGNDVTAELKLGIDRIAAIHLKDTLPVTGDNPGQFRDVPFGEGCVDFVSIF
CCCCCCCCCCCCCCHHHHHHCHHHHHEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
KTLHELNYRGSFLIEMWTEKASEPVLEIIQARRWIESRMQEGGFTC
HHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MRNHPLGIYEKALAKDLSWPERLVLAKSCGFDFVEMSVDETDERLSRLEWTSAQRASLVN
CCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHH
AMLESGVAIPSMCLSAHRRFPFGSRDEAVRQRAREIMTKAIRLARDLGIRTIQLAGYDVY
HHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEEE
YEEHDEGTQQRFAEGLAWAVEQAAAAQVMLAVEIMDTAFMNSISKWKKWDEMLSSPWFTV
ECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
YPDVGNLSAWGNDVTAELKLGIDRIAAIHLKDTLPVTGDNPGQFRDVPFGEGCVDFVSIF
CCCCCCCCCCCCCCHHHHHHCHHHHHEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
KTLHELNYRGSFLIEMWTEKASEPVLEIIQARRWIESRMQEGGFTC
HHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]