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The map label for this gene is 28379473

Identifier: 28379473

GI number: 28379473

Start: 2712050

End: 2712445

Strand: Direct

Name: 28379473

Synonym: lp_3050

Alternate gene names: NA

Gene position: 2712050-2712445 (Clockwise)

Preceding gene: 28379468

Following gene: 28379474

Centisome position: 81.98

GC content: 48.48

Gene sequence:

>396_bases
ATGAAAAAATTTAACTTTAAAACCATGTTGCTATTAGTTTTGGCTAGTTGTGTCTTCGGGGTCGTCGTTAACGTGACTAC
TAGTCTTGGACCACAAACCGCAATCACCGCCCAGGCCTCCAAGAAGCTCAGCCAAGCCCAGCAAATTGCTAAGATCAACG
CCAAGCTTTCGAAGGCTAACCGCGCTGCCAAAAATTGGATCGCCTATCGAGAATCTGGATACAGTTATACGGCTCGTAAT
GGCCGCTGCTACGGTCGCTATCAATTGTTGCGCTCATACTTACACGGCAACTTGTCACCCGTCAATCAGGAAAAACGTGC
TAATACCTACGTCGCCTCGCGCTACGGTTCCTGGGTCAAGGCCAAACGGTTCTGGCAACATCATCACTGGTACTAA

Upstream 100 bases:

>100_bases
TTTAATAACATAGTAACTTTTCTTTAACATAGCTGACACATAATTGGCGTATTCTACACTTATCAGCTTAGGGAAAATAT
AAAACGGGGTTATACATATC

Downstream 100 bases:

>100_bases
CCCAATTTTTCTATTGGATCACACTAAAAAGACGACTAATTACTAAGATTGTGAATCTTTGTAATTAGTCGTCTTTTTGT
AGGCAGTAATATCAAATAGC

Product: extracellular protein

Products: NA

Alternate protein names: Extracellular Protein; Aggregation Promoting Factor-Like Surface Protein; LysM Domain Protein; Aggregation Promoting Factor; Agregation Promoting Protein; LysM Domain-Containing Protein; Surface Protein Aggregation Promoting Factor; Extracellular Surface Protein; Cell-Wall Hydrolase; Membrane Protease Subunit Stomatin/Prohibitin Family; Aggregation Promoting Factor Surface Protein; Membrane Protease Family Stomatin/Prohibitin-Like Protein; SH3 Type 3 Domain Protein; Cell Surface Protein; LysM Repeat-Containing Protein; Aggregation Promoting Factrelated Surface Protein

Number of amino acids: Translated: 131; Mature: 131

Protein sequence:

>131_residues
MKKFNFKTMLLLVLASCVFGVVVNVTTSLGPQTAITAQASKKLSQAQQIAKINAKLSKANRAAKNWIAYRESGYSYTARN
GRCYGRYQLLRSYLHGNLSPVNQEKRANTYVASRYGSWVKAKRFWQHHHWY

Sequences:

>Translated_131_residues
MKKFNFKTMLLLVLASCVFGVVVNVTTSLGPQTAITAQASKKLSQAQQIAKINAKLSKANRAAKNWIAYRESGYSYTARN
GRCYGRYQLLRSYLHGNLSPVNQEKRANTYVASRYGSWVKAKRFWQHHHWY
>Mature_131_residues
MKKFNFKTMLLLVLASCVFGVVVNVTTSLGPQTAITAQASKKLSQAQQIAKINAKLSKANRAAKNWIAYRESGYSYTARN
GRCYGRYQLLRSYLHGNLSPVNQEKRANTYVASRYGSWVKAKRFWQHHHWY

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15006; Mature: 15006

Theoretical pI: Translated: 11.04; Mature: 11.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKFNFKTMLLLVLASCVFGVVVNVTTSLGPQTAITAQASKKLSQAQQIAKINAKLSKAN
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RAAKNWIAYRESGYSYTARNGRCYGRYQLLRSYLHGNLSPVNQEKRANTYVASRYGSWVK
HHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCHHHH
AKRFWQHHHWY
HHHHHHHCCCC
>Mature Secondary Structure
MKKFNFKTMLLLVLASCVFGVVVNVTTSLGPQTAITAQASKKLSQAQQIAKINAKLSKAN
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RAAKNWIAYRESGYSYTARNGRCYGRYQLLRSYLHGNLSPVNQEKRANTYVASRYGSWVK
HHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCHHHH
AKRFWQHHHWY
HHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA