| Definition | Lactobacillus plantarum WCFS1, complete genome. |
|---|---|
| Accession | NC_004567 |
| Length | 3,308,274 |
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The map label for this gene is glpQ4 [H]
Identifier: 28379112
GI number: 28379112
Start: 2300909
End: 2302702
Strand: Direct
Name: glpQ4 [H]
Synonym: lp_2582
Alternate gene names: 28379112
Gene position: 2300909-2302702 (Clockwise)
Preceding gene: 28379111
Following gene: 28379115
Centisome position: 69.55
GC content: 43.65
Gene sequence:
>1794_bases ATGGGCGCTTGGCGTTTTTGGTGGGATAGTACCCGCCGTTTTTATAAGAACTGGGGCAGTTACGTTGCCCTGATATTTAG TACCAATTTGGTCATTAGTTACCTAGCAATTCCTTTTTTTAATTGGGTGCTAGAAATGTTACTCAAGTGGCAACGGGTCA GTTATGTCTCGTACACGAATATCGGTAGTATTATTATTCACCAACCACTGGCCGCACTCGGTATGGTGGCGATCTTATTA GCCATTATTATTTTAGTTTATTGGCAATTTGCCTTTCTGCTACTGGGTATTATGAATATCTTTCGTGGCCGACCACAAAC TGTGCGCGCGGTCTTGCGGTCAACGGTCACTAGTCTGACTGGCACCTCACCCAGCACTTTCTTATTCTTTATCGGCTACT TTATTGTGATTTTGCCATTTGGAAGTTTCATCTTTACAACACCATTACTCAACAAGGCCAAAATTCCAGCCTTCATTGTC AGCTATCTCATGGAAAACCCTTGGATGACGCTCGGCTTGGGGTGCTTCTACTTACTGGCTGGTTACCTTGGAATTCGCCT AATTAGCCTATTACCGCTAATGATTGTCGATCGGCTTCCATGGAAAACGGCCGTTACTCGTAGTTGGCAACAAACGCGCC ACCATCTTTGGCGCTACTTATGGACCATGATTGTGACCTTATTTATGATTTTTCTGATTGTCACGACCATTTATACGTTG ATTTACGTAGCCCAGCTTCAATTCGATAAAACAAGTTTTGCCATGGCCGCTGCCACTGTTAATCTCTTTATCATGGAAGC AATCACCGAAATTATTATTTGTTATACCACGGCCATCTTCATGATGTTAATTATTGTTTGCTATCGTCAAGACTTTACAC TCCTCCGCCAACAACCGCAATACTTTAACGAGGCACCACGGTTGCGCAAATTGACCCGGGCGAGTGTTGCAATTGGCTTG CTGTTAGCGACAAGTTTGCTAGTTGCCGTTAATTTAGTCTACTTAAATGGACTAGTGATTACCAAGCCAATCATGATTTC CCACCGCGGCGTCGATAACGGTAACGGCGTGCAAAACACAATTCCTGCACTGATCAAGACCAGCAAGGAACATCCGGATT ACGTTGAGATGGACATCCAAGTCACCAAGGACCATCAATTCGTTGTCATGCATGATCCAACCTTAAAAGCCTTAGCTGGC GTTAAGAAAAAGCCATCTCAATTAACATTAAAACAACTAGAAAAAATTACTGTTCGTGAAAATGGCTATCAGGCAAAGAT TCCAAGTTTCGATGCTTACCTGAAAGCGGCTCACAAGCATCATCAAAAACTATTAGTCGAAATCAAGACCAGCTCGGCTT ACACCGCCGCCGATACTAAACGGTTCATCGATCGTTATGGTGCGACCCTACTGGCTCATCATGACCAAGTCCATACGCTT AGTTTCAAAGTCATGCGTGATTTGAAACGCTTAGATCAAAAACAATTCGTTAGTTACATCTTGCCTTATAATCTCACGTT CCCGCATACAGTCGCGAACGGCTACACCATGGAGGTCACCACATTAAACGACCAATTCGTTGACAAGGCTGACCGCAATC ACAAGACGGTTTACGCCTGGGACATTGATAATACGGACCAAATGGATCAAATGATGTTCATGGGCGTCACCGGCGTAGTC ACTGATAATCTAACGGAAATGCAGCAAGAAGTTAAGAGCAACACCGACCATCCCAGCTATGCCAAACTCTTATTGACTTT TATGAATGAATTAAGTCTAACTAGCAACGAGTAA
Upstream 100 bases:
>100_bases AGCAATTATTTAGATAAAAATAACTAACACAATGCGTGTTACAATAAAATTAATAATGACTTGATTCGTCAATGCCGGAT CAAGGGAGGAGGCACCACGC
Downstream 100 bases:
>100_bases TCCACATTATTTCAAAGTTGCTGTCACAGCGAGTGCATAAATCATTCAGCAACCACGAAAATTCTGAATGATGTCGTTGC TGAAAAAGTGACTTCCAGCT
Product: glycerophosphodiester phosphodiesterase
Products: NA
Alternate protein names: Glycerophosphodiester phosphodiesterase [H]
Number of amino acids: Translated: 597; Mature: 596
Protein sequence:
>597_residues MGAWRFWWDSTRRFYKNWGSYVALIFSTNLVISYLAIPFFNWVLEMLLKWQRVSYVSYTNIGSIIIHQPLAALGMVAILL AIIILVYWQFAFLLLGIMNIFRGRPQTVRAVLRSTVTSLTGTSPSTFLFFIGYFIVILPFGSFIFTTPLLNKAKIPAFIV SYLMENPWMTLGLGCFYLLAGYLGIRLISLLPLMIVDRLPWKTAVTRSWQQTRHHLWRYLWTMIVTLFMIFLIVTTIYTL IYVAQLQFDKTSFAMAAATVNLFIMEAITEIIICYTTAIFMMLIIVCYRQDFTLLRQQPQYFNEAPRLRKLTRASVAIGL LLATSLLVAVNLVYLNGLVITKPIMISHRGVDNGNGVQNTIPALIKTSKEHPDYVEMDIQVTKDHQFVVMHDPTLKALAG VKKKPSQLTLKQLEKITVRENGYQAKIPSFDAYLKAAHKHHQKLLVEIKTSSAYTAADTKRFIDRYGATLLAHHDQVHTL SFKVMRDLKRLDQKQFVSYILPYNLTFPHTVANGYTMEVTTLNDQFVDKADRNHKTVYAWDIDNTDQMDQMMFMGVTGVV TDNLTEMQQEVKSNTDHPSYAKLLLTFMNELSLTSNE
Sequences:
>Translated_597_residues MGAWRFWWDSTRRFYKNWGSYVALIFSTNLVISYLAIPFFNWVLEMLLKWQRVSYVSYTNIGSIIIHQPLAALGMVAILL AIIILVYWQFAFLLLGIMNIFRGRPQTVRAVLRSTVTSLTGTSPSTFLFFIGYFIVILPFGSFIFTTPLLNKAKIPAFIV SYLMENPWMTLGLGCFYLLAGYLGIRLISLLPLMIVDRLPWKTAVTRSWQQTRHHLWRYLWTMIVTLFMIFLIVTTIYTL IYVAQLQFDKTSFAMAAATVNLFIMEAITEIIICYTTAIFMMLIIVCYRQDFTLLRQQPQYFNEAPRLRKLTRASVAIGL LLATSLLVAVNLVYLNGLVITKPIMISHRGVDNGNGVQNTIPALIKTSKEHPDYVEMDIQVTKDHQFVVMHDPTLKALAG VKKKPSQLTLKQLEKITVRENGYQAKIPSFDAYLKAAHKHHQKLLVEIKTSSAYTAADTKRFIDRYGATLLAHHDQVHTL SFKVMRDLKRLDQKQFVSYILPYNLTFPHTVANGYTMEVTTLNDQFVDKADRNHKTVYAWDIDNTDQMDQMMFMGVTGVV TDNLTEMQQEVKSNTDHPSYAKLLLTFMNELSLTSNE >Mature_596_residues GAWRFWWDSTRRFYKNWGSYVALIFSTNLVISYLAIPFFNWVLEMLLKWQRVSYVSYTNIGSIIIHQPLAALGMVAILLA IIILVYWQFAFLLLGIMNIFRGRPQTVRAVLRSTVTSLTGTSPSTFLFFIGYFIVILPFGSFIFTTPLLNKAKIPAFIVS YLMENPWMTLGLGCFYLLAGYLGIRLISLLPLMIVDRLPWKTAVTRSWQQTRHHLWRYLWTMIVTLFMIFLIVTTIYTLI YVAQLQFDKTSFAMAAATVNLFIMEAITEIIICYTTAIFMMLIIVCYRQDFTLLRQQPQYFNEAPRLRKLTRASVAIGLL LATSLLVAVNLVYLNGLVITKPIMISHRGVDNGNGVQNTIPALIKTSKEHPDYVEMDIQVTKDHQFVVMHDPTLKALAGV KKKPSQLTLKQLEKITVRENGYQAKIPSFDAYLKAAHKHHQKLLVEIKTSSAYTAADTKRFIDRYGATLLAHHDQVHTLS FKVMRDLKRLDQKQFVSYILPYNLTFPHTVANGYTMEVTTLNDQFVDKADRNHKTVYAWDIDNTDQMDQMMFMGVTGVVT DNLTEMQQEVKSNTDHPSYAKLLLTFMNELSLTSNE
Specific function: Glycerophosphoryl diester phosphodiesterase hydrolyzes deacylated phospholipids to sn-glycerol 3-phosphate (G3P) and the corresponding alcohols [H]
COG id: COG0584
COG function: function code C; Glycerophosphoryl diester phosphodiesterase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 GDPD domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004129 - InterPro: IPR017946 [H]
Pfam domain/function: PF03009 GDPD [H]
EC number: =3.1.4.46 [H]
Molecular weight: Translated: 68610; Mature: 68479
Theoretical pI: Translated: 9.82; Mature: 9.82
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 3.9 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGAWRFWWDSTRRFYKNWGSYVALIFSTNLVISYLAIPFFNWVLEMLLKWQRVSYVSYTN CCCCHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEECCC IGSIIIHQPLAALGMVAILLAIIILVYWQFAFLLLGIMNIFRGRPQTVRAVLRSTVTSLT CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC GTSPSTFLFFIGYFIVILPFGSFIFTTPLLNKAKIPAFIVSYLMENPWMTLGLGCFYLLA CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHH GYLGIRLISLLPLMIVDRLPWKTAVTRSWQQTRHHLWRYLWTMIVTLFMIFLIVTTIYTL HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IYVAQLQFDKTSFAMAAATVNLFIMEAITEIIICYTTAIFMMLIIVCYRQDFTLLRQQPQ HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCH YFNEAPRLRKLTRASVAIGLLLATSLLVAVNLVYLNGLVITKPIMISHRGVDNGNGVQNT HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCEEEEECCCCCCCCCHHH IPALIKTSKEHPDYVEMDIQVTKDHQFVVMHDPTLKALAGVKKKPSQLTLKQLEKITVRE HHHHHHCCCCCCCEEEEEEEEECCCEEEEEECCHHHHHHCCCCCCHHHHHHHHHHHHHCC NGYQAKIPSFDAYLKAAHKHHQKLLVEIKTSSAYTAADTKRFIDRYGATLLAHHDQVHTL CCCCCCCCCHHHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHHHHHCCHHEECCCHHHHH SFKVMRDLKRLDQKQFVSYILPYNLTFPHTVANGYTMEVTTLNDQFVDKADRNHKTVYAW HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCHHHHHHCCCCCCEEEEE DIDNTDQMDQMMFMGVTGVVTDNLTEMQQEVKSNTDHPSYAKLLLTFMNELSLTSNE ECCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure GAWRFWWDSTRRFYKNWGSYVALIFSTNLVISYLAIPFFNWVLEMLLKWQRVSYVSYTN CCCHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEECCC IGSIIIHQPLAALGMVAILLAIIILVYWQFAFLLLGIMNIFRGRPQTVRAVLRSTVTSLT CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC GTSPSTFLFFIGYFIVILPFGSFIFTTPLLNKAKIPAFIVSYLMENPWMTLGLGCFYLLA CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHH GYLGIRLISLLPLMIVDRLPWKTAVTRSWQQTRHHLWRYLWTMIVTLFMIFLIVTTIYTL HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IYVAQLQFDKTSFAMAAATVNLFIMEAITEIIICYTTAIFMMLIIVCYRQDFTLLRQQPQ HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCH YFNEAPRLRKLTRASVAIGLLLATSLLVAVNLVYLNGLVITKPIMISHRGVDNGNGVQNT HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCEEEEECCCCCCCCCHHH IPALIKTSKEHPDYVEMDIQVTKDHQFVVMHDPTLKALAGVKKKPSQLTLKQLEKITVRE HHHHHHCCCCCCCEEEEEEEEECCCEEEEEECCHHHHHHCCCCCCHHHHHHHHHHHHHCC NGYQAKIPSFDAYLKAAHKHHQKLLVEIKTSSAYTAADTKRFIDRYGATLLAHHDQVHTL CCCCCCCCCHHHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHHHHHCCHHEECCCHHHHH SFKVMRDLKRLDQKQFVSYILPYNLTFPHTVANGYTMEVTTLNDQFVDKADRNHKTVYAW HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCHHHHHHCCCCCCEEEEE DIDNTDQMDQMMFMGVTGVVTDNLTEMQQEVKSNTDHPSYAKLLLTFMNELSLTSNE ECCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9579061; 9384377 [H]