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The map label for this gene is yezC [H]

Identifier: 28379065

GI number: 28379065

Start: 2249895

End: 2250359

Strand: Direct

Name: yezC [H]

Synonym: lp_2521

Alternate gene names: 28379065

Gene position: 2249895-2250359 (Clockwise)

Preceding gene: 28379056

Following gene: 28379068

Centisome position: 68.01

GC content: 41.94

Gene sequence:

>465_bases
ATGGATAAAACCGATTTGAAGATTTTGAACGCCTTGCAGGCCGACGCGCGAATCTCCTTAAAAGCGCTCGCCGATCAATG
CTTCATTTCTTCGCCCGCAATTTCCGCTCGCATCACTCGTCTGAAAAAGAGTGGCATCATTCGTGACTATCAAGCAAATC
TTAACTTTGAAAAGCTCAATTACCACATAAAAGCCTATATTCAACTCCAACTTGAACCAACGCAAAAGGAGCGCTTTTAC
CCATTTGTTGCCGGCATTCCTAATATTCTGGAATGTGACTGTATCACGGGTGAATACTCTCAAATTTTGAAAGTGATTTT
CGAATCAACGCAGGCATTAGACGAGTTTGTCAACCAATTACAAACATTTGGAAAAACGAGTACTCAGATCGTCTTTTCAA
CAAGTGTCCCTAACCGTGGCCTCACGTTGCCCGATGATCACGACATGTCTAAAATTAATCATTAA

Upstream 100 bases:

>100_bases
TTAAGAAGCTATCCTTTCAGTAGAAACTTTACACTAAATATTAAAAATCACTGTGAAAGTATGCTATGATACTAATAATT
ACTTAGGAGGCGTTTTAACG

Downstream 100 bases:

>100_bases
TCCGCATGCACAGGGAAACTGTAGCTTAATAGGCGCACCGAGAAACCATGTTAGTTTCTCGATGCGCCTATTTAATGAAT
TCCAATTGCAATGTCAGAGA

Product: transcription regulator, AsnC-type

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 154; Mature: 154

Protein sequence:

>154_residues
MDKTDLKILNALQADARISLKALADQCFISSPAISARITRLKKSGIIRDYQANLNFEKLNYHIKAYIQLQLEPTQKERFY
PFVAGIPNILECDCITGEYSQILKVIFESTQALDEFVNQLQTFGKTSTQIVFSTSVPNRGLTLPDDHDMSKINH

Sequences:

>Translated_154_residues
MDKTDLKILNALQADARISLKALADQCFISSPAISARITRLKKSGIIRDYQANLNFEKLNYHIKAYIQLQLEPTQKERFY
PFVAGIPNILECDCITGEYSQILKVIFESTQALDEFVNQLQTFGKTSTQIVFSTSVPNRGLTLPDDHDMSKINH
>Mature_154_residues
MDKTDLKILNALQADARISLKALADQCFISSPAISARITRLKKSGIIRDYQANLNFEKLNYHIKAYIQLQLEPTQKERFY
PFVAGIPNILECDCITGEYSQILKVIFESTQALDEFVNQLQTFGKTSTQIVFSTSVPNRGLTLPDDHDMSKINH

Specific function: Unknown

COG id: COG1522

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081742, Length=149, Percent_Identity=28.8590604026846, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR000485
- InterPro:   IPR019885
- InterPro:   IPR000835
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg; PF01047 MarR [H]

EC number: NA

Molecular weight: Translated: 17454; Mature: 17454

Theoretical pI: Translated: 7.44; Mature: 7.44

Prosite motif: PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKTDLKILNALQADARISLKALADQCFISSPAISARITRLKKSGIIRDYQANLNFEKLN
CCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCEEHHCCCCHHHHE
YHIKAYIQLQLEPTQKERFYPFVAGIPNILECDCITGEYSQILKVIFESTQALDEFVNQL
EEEEEEEEEEECCCCCHHCCHHHHCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHH
QTFGKTSTQIVFSTSVPNRGLTLPDDHDMSKINH
HHHCCCCEEEEEEECCCCCCCCCCCCCCHHHCCC
>Mature Secondary Structure
MDKTDLKILNALQADARISLKALADQCFISSPAISARITRLKKSGIIRDYQANLNFEKLN
CCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCEEHHCCCCHHHHE
YHIKAYIQLQLEPTQKERFYPFVAGIPNILECDCITGEYSQILKVIFESTQALDEFVNQL
EEEEEEEEEEECCCCCHHCCHHHHCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHH
QTFGKTSTQIVFSTSVPNRGLTLPDDHDMSKINH
HHHCCCCEEEEEEECCCCCCCCCCCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]