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The map label for this gene is ydeD [H]

Identifier: 28379056

GI number: 28379056

Start: 2242167

End: 2243105

Strand: Direct

Name: ydeD [H]

Synonym: lp_2509

Alternate gene names: 28379056

Gene position: 2242167-2243105 (Clockwise)

Preceding gene: 28379045

Following gene: 28379065

Centisome position: 67.77

GC content: 48.88

Gene sequence:

>939_bases
TTGACACAACAAAATCATTTACGGGGCGTCTTACTCGCTAGTAGTGCCTGTATTCTGTGGGGTATCTCAGGGGTGGCTGC
GAGTACCCTCTTCATCAATAATCCGCATCTAACCGCAATGTGGCTAACGCAGGTCCGCATGATCAGTGCAGGCTTGATTT
TACTCGTCTGGGGGATGGTGGCTGGTAAACACCCCTTTAAAATCTGGCATCACCGCCATGCCGCTTGGACAGCGGTGAGT
TACGGTTTGCTGGGGCTGATTCCGGTTCAACTTTGCTATTTCGAAGCGGTTCGCGTTGGTAATGCCCCGATTGCCACGAT
TATTCAATTTCTTGGCCCATTCATTATCAGCATCTATTACTTCTTATTTAAGCACGTGACACCCAGTCGTATCGAACTGA
TTGGTATGATCATGGCCTTTATCGGGACACTATTGATCGTGACACACGGTCACTTAAACAGTCTGGCAATTTCACCCGTC
ATCTTGTTCTGGGGCGGCTTATCCGCCATCGGGGTCGCCACGAACACCTTGATTCCGCGAACCATTTTACCAAAGTATGG
CGCATTAACCGTCACTGGCTGGGGGTTACTGATTGCGGGTCTGTTTCTAACCTTGTTACAACCCATGTGGCGTGTCCACC
TGACGATTACCTGGCCCCAATTAGGCTTGTTAATCGTCATTATTCTCTTAGGAACGGTGGCCCCCTTCCTGATGTTTGCG
CGTAGTTTAAGCGATATTCTACCGACAACGGCCAGTTTGATGGACGCCTTCGAGCCCTTAGCCGCGACGGTTTTCTCGAT
TACTTTTCTAAACGTTCAACTCACTAGCTTCGATTTTATCGGCGGCTTACTGATTATCTTGGCAGTCATGGCACTTTCAC
TGAACACACATAAAATGTTGCACTTTTTGCGGCGACGCCGAGCACACTCTTCATCTTAA

Upstream 100 bases:

>100_bases
AACCCATGAGAATAATAAGAGATTCCTCATAAACATAGGTTCCCAGACGCACCTTTGCTATAATGAAAATTGCTTATTAT
TTTCAGAAAGGAGTCGTAAT

Downstream 100 bases:

>100_bases
ACTGCTGTAATGATTGTCATGACCACTAGACAGATTAGTTGGCAGAACAGTTGAGCTGTGCTAAACTAGGATTGTTGAAT
TTGGGGATGTTCTGGATTCG

Product: transport protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 312; Mature: 311

Protein sequence:

>312_residues
MTQQNHLRGVLLASSACILWGISGVAASTLFINNPHLTAMWLTQVRMISAGLILLVWGMVAGKHPFKIWHHRHAAWTAVS
YGLLGLIPVQLCYFEAVRVGNAPIATIIQFLGPFIISIYYFLFKHVTPSRIELIGMIMAFIGTLLIVTHGHLNSLAISPV
ILFWGGLSAIGVATNTLIPRTILPKYGALTVTGWGLLIAGLFLTLLQPMWRVHLTITWPQLGLLIVIILLGTVAPFLMFA
RSLSDILPTTASLMDAFEPLAATVFSITFLNVQLTSFDFIGGLLIILAVMALSLNTHKMLHFLRRRRAHSSS

Sequences:

>Translated_312_residues
MTQQNHLRGVLLASSACILWGISGVAASTLFINNPHLTAMWLTQVRMISAGLILLVWGMVAGKHPFKIWHHRHAAWTAVS
YGLLGLIPVQLCYFEAVRVGNAPIATIIQFLGPFIISIYYFLFKHVTPSRIELIGMIMAFIGTLLIVTHGHLNSLAISPV
ILFWGGLSAIGVATNTLIPRTILPKYGALTVTGWGLLIAGLFLTLLQPMWRVHLTITWPQLGLLIVIILLGTVAPFLMFA
RSLSDILPTTASLMDAFEPLAATVFSITFLNVQLTSFDFIGGLLIILAVMALSLNTHKMLHFLRRRRAHSSS
>Mature_311_residues
TQQNHLRGVLLASSACILWGISGVAASTLFINNPHLTAMWLTQVRMISAGLILLVWGMVAGKHPFKIWHHRHAAWTAVSY
GLLGLIPVQLCYFEAVRVGNAPIATIIQFLGPFIISIYYFLFKHVTPSRIELIGMIMAFIGTLLIVTHGHLNSLAISPVI
LFWGGLSAIGVATNTLIPRTILPKYGALTVTGWGLLIAGLFLTLLQPMWRVHLTITWPQLGLLIVIILLGTVAPFLMFAR
SLSDILPTTASLMDAFEPLAATVFSITFLNVQLTSFDFIGGLLIILAVMALSLNTHKMLHFLRRRRAHSSS

Specific function: Unknown

COG id: COG0697

COG function: function code GER; Permeases of the drug/metabolite transporter (DMT) superfamily

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 DUF6 domains [H]

Homologues:

Organism=Escherichia coli, GI1790092, Length=303, Percent_Identity=31.3531353135314, Blast_Score=144, Evalue=7e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 34266; Mature: 34135

Theoretical pI: Translated: 11.03; Mature: 11.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQQNHLRGVLLASSACILWGISGVAASTLFINNPHLTAMWLTQVRMISAGLILLVWGMV
CCCCHHHHHHHHHCCHHHHHHHHHHHHHEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHH
AGKHPFKIWHHRHAAWTAVSYGLLGLIPVQLCYFEAVRVGNAPIATIIQFLGPFIISIYY
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
FLFKHVTPSRIELIGMIMAFIGTLLIVTHGHLNSLAISPVILFWGGLSAIGVATNTLIPR
HHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCH
TILPKYGALTVTGWGLLIAGLFLTLLQPMWRVHLTITWPQLGLLIVIILLGTVAPFLMFA
HHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHEEEEEECHHHHHHHHHHHHHHHHHHHHHH
RSLSDILPTTASLMDAFEPLAATVFSITFLNVQLTSFDFIGGLLIILAVMALSLNTHKML
HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHHHHHCCCHHHHH
HFLRRRRAHSSS
HHHHHHHCCCCC
>Mature Secondary Structure 
TQQNHLRGVLLASSACILWGISGVAASTLFINNPHLTAMWLTQVRMISAGLILLVWGMV
CCCHHHHHHHHHCCHHHHHHHHHHHHHEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHH
AGKHPFKIWHHRHAAWTAVSYGLLGLIPVQLCYFEAVRVGNAPIATIIQFLGPFIISIYY
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
FLFKHVTPSRIELIGMIMAFIGTLLIVTHGHLNSLAISPVILFWGGLSAIGVATNTLIPR
HHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCH
TILPKYGALTVTGWGLLIAGLFLTLLQPMWRVHLTITWPQLGLLIVIILLGTVAPFLMFA
HHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHEEEEEECHHHHHHHHHHHHHHHHHHHHHH
RSLSDILPTTASLMDAFEPLAATVFSITFLNVQLTSFDFIGGLLIILAVMALSLNTHKML
HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHHHHHCCCHHHHH
HFLRRRRAHSSS
HHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]