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The map label for this gene is nifU [H]

Identifier: 28378188

GI number: 28378188

Start: 1348448

End: 1348915

Strand: Direct

Name: nifU [H]

Synonym: lp_1471

Alternate gene names: 28378188

Gene position: 1348448-1348915 (Clockwise)

Preceding gene: 28378187

Following gene: 28378189

Centisome position: 40.76

GC content: 45.3

Gene sequence:

>468_bases
ATGGGACTGTCTAAATTAAGTGGCTTATATCGCGAAGTGATTTTAGATCATGGTGATCATCCGCATCATAAAAATGCGTT
GCCAAACGCAACACATGCCATTACGTTGAAAAATCCAACTTGTGGCGACGTCATCAATTTGGCTATTCAATTGGATGCGC
ATGATCAAATCGAAGATATTGGATTTACGGGTGAGGGCTGTACCATCAGTCAAGCATCGGCCAGTATGATGACGGATGCG
GTGATGGGTAAGTCGAAAGAACAGGCATTGGCAATGGCTAAGACATTTTCGGATATGGCGATTGGCAAGCAACACCCGCA
GGCCGATATGGATGCCTTAGAAGACGCCGCAATTTTATCGAATATTATGCAATTTCCGGCACGAATCAAATGTGCCACGC
TAGCTTGGTGGGCTTTGCAACGGGCATTGCTTGCTGAAAATGGCAATGAGGAGGAATCAGAAGTATGA

Upstream 100 bases:

>100_bases
TTAGTAGCAACTGCACGGGCTAGTTTTTACATTTACAATACACAAGCGGACGCTGATCAATTATTAACGTCACTCCAAGC
AACAAAGGAGTTTTTCGAAC

Downstream 100 bases:

>100_bases
GTGAAGTACCTGACGTGGTCAAAAATGACCGTGATTATGAATATGGATTTCATGACGATGTCAAACCAGCATATTCAACT
GGGCGAGGATTAACGGAAGC

Product: NifU-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 155; Mature: 154

Protein sequence:

>155_residues
MGLSKLSGLYREVILDHGDHPHHKNALPNATHAITLKNPTCGDVINLAIQLDAHDQIEDIGFTGEGCTISQASASMMTDA
VMGKSKEQALAMAKTFSDMAIGKQHPQADMDALEDAAILSNIMQFPARIKCATLAWWALQRALLAENGNEEESEV

Sequences:

>Translated_155_residues
MGLSKLSGLYREVILDHGDHPHHKNALPNATHAITLKNPTCGDVINLAIQLDAHDQIEDIGFTGEGCTISQASASMMTDA
VMGKSKEQALAMAKTFSDMAIGKQHPQADMDALEDAAILSNIMQFPARIKCATLAWWALQRALLAENGNEEESEV
>Mature_154_residues
GLSKLSGLYREVILDHGDHPHHKNALPNATHAITLKNPTCGDVINLAIQLDAHDQIEDIGFTGEGCTISQASASMMTDAV
MGKSKEQALAMAKTFSDMAIGKQHPQADMDALEDAAILSNIMQFPARIKCATLAWWALQRALLAENGNEEESEV

Specific function: May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins (Potential) [H]

COG id: COG0822

COG function: function code C; NifU homolog involved in Fe-S cluster formation

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nifU family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002871
- InterPro:   IPR011341 [H]

Pfam domain/function: PF01592 NifU_N [H]

EC number: NA

Molecular weight: Translated: 16740; Mature: 16609

Theoretical pI: Translated: 4.77; Mature: 4.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
5.2 %Met     (Translated Protein)
7.1 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
6.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGLSKLSGLYREVILDHGDHPHHKNALPNATHAITLKNPTCGDVINLAIQLDAHDQIEDI
CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEEEECCCCCHHHC
GFTGEGCTISQASASMMTDAVMGKSKEQALAMAKTFSDMAIGKQHPQADMDALEDAAILS
CCCCCCCEECHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
NIMQFPARIKCATLAWWALQRALLAENGNEEESEV
HHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
GLSKLSGLYREVILDHGDHPHHKNALPNATHAITLKNPTCGDVINLAIQLDAHDQIEDI
CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEEEECCCCCHHHC
GFTGEGCTISQASASMMTDAVMGKSKEQALAMAKTFSDMAIGKQHPQADMDALEDAAILS
CCCCCCCEECHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
NIMQFPARIKCATLAWWALQRALLAENGNEEESEV
HHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]