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The map label for this gene is yabF [H]

Identifier: 28377357

GI number: 28377357

Start: 411043

End: 411606

Strand: Direct

Name: yabF [H]

Synonym: lp_0457

Alternate gene names: 28377357

Gene position: 411043-411606 (Clockwise)

Preceding gene: 28377356

Following gene: 28377358

Centisome position: 12.42

GC content: 52.66

Gene sequence:

>564_bases
TTGAAAAAGATTAAAGAAGTAATTGTGGTTGAAGGGAAAGATGACACGAAGCGTCTCGCCCTAGCTGTCGATGCAGATAC
ACTTGAAACGAATGGCTCGGCGATTTCCGAAGCCACCTTAGCCCAGATCAAAACGTTGCAGGCCAGTCGCGGCGTGATCG
TGTTCACCGACCCAGACTTTTCCGGTGAACGTATTCGGAAGACGATTTCGGCGGCTGTTCCGGGTGTCAAGCACGCCTTT
TTGCCCCGCAAAGCTGGTGTACCAACTAAGGCTGGGGGGAGCCTGGGCGTTGAACACGCGAGCCCAGCGGCGATCCAAAC
TGCACTTGCCCATCTATATACGGAGCAAATCGACGAGCCCCAACAGTTGATCAGTCACCATGATTTGATTGCGGCGGGCT
TACTAGCGGGTCCCACGGCGCGTCAACGACGCGAACAGTTGGGTGAACGTTTAGGTATCGGATACGTCAACGGTAAACAG
CTGCCCAAACGGTTACAACTATTTCAAATTCAGCCAGCTGATTTTTGGGCGGCTGTTGACCAACTAACCACAGAGGAGAA
ATGA

Upstream 100 bases:

>100_bases
TACACGCGGTACGTTGTTGAAGCAATTGCCAAGTTACGTGAAACGACGCCGGAAATTATAGCGGCCCAAACTTATCAAAA
TGCAGAGGAATTTTTTAAGA

Downstream 100 bases:

>100_bases
TGAGTAGAGATTTAGATATTGCGAATCCCGCCCGCACACGGGCAATTATGCATACGTACGGGTTACAAGTTAAGAAGAGT
TTAGGACAGAATTTTTTAAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 187; Mature: 187

Protein sequence:

>187_residues
MKKIKEVIVVEGKDDTKRLALAVDADTLETNGSAISEATLAQIKTLQASRGVIVFTDPDFSGERIRKTISAAVPGVKHAF
LPRKAGVPTKAGGSLGVEHASPAAIQTALAHLYTEQIDEPQQLISHHDLIAAGLLAGPTARQRREQLGERLGIGYVNGKQ
LPKRLQLFQIQPADFWAAVDQLTTEEK

Sequences:

>Translated_187_residues
MKKIKEVIVVEGKDDTKRLALAVDADTLETNGSAISEATLAQIKTLQASRGVIVFTDPDFSGERIRKTISAAVPGVKHAF
LPRKAGVPTKAGGSLGVEHASPAAIQTALAHLYTEQIDEPQQLISHHDLIAAGLLAGPTARQRREQLGERLGIGYVNGKQ
LPKRLQLFQIQPADFWAAVDQLTTEEK
>Mature_187_residues
MKKIKEVIVVEGKDDTKRLALAVDADTLETNGSAISEATLAQIKTLQASRGVIVFTDPDFSGERIRKTISAAVPGVKHAF
LPRKAGVPTKAGGSLGVEHASPAAIQTALAHLYTEQIDEPQQLISHHDLIAAGLLAGPTARQRREQLGERLGIGYVNGKQ
LPKRLQLFQIQPADFWAAVDQLTTEEK

Specific function: Unknown

COG id: COG1658

COG function: function code L; Small primase-like proteins (Toprim domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Toprim domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004466
- InterPro:   IPR006171 [H]

Pfam domain/function: PF01751 Toprim [H]

EC number: NA

Molecular weight: Translated: 20163; Mature: 20163

Theoretical pI: Translated: 8.96; Mature: 8.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
0.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
0.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKIKEVIVVEGKDDTKRLALAVDADTLETNGSAISEATLAQIKTLQASRGVIVFTDPDF
CCCCCEEEEEECCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC
SGERIRKTISAAVPGVKHAFLPRKAGVPTKAGGSLGVEHASPAAIQTALAHLYTEQIDEP
CHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCH
QQLISHHDLIAAGLLAGPTARQRREQLGERLGIGYVNGKQLPKRLQLFQIQPADFWAAVD
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHEEECCCHHHHHHHH
QLTTEEK
HHHCCCC
>Mature Secondary Structure
MKKIKEVIVVEGKDDTKRLALAVDADTLETNGSAISEATLAQIKTLQASRGVIVFTDPDF
CCCCCEEEEEECCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC
SGERIRKTISAAVPGVKHAFLPRKAGVPTKAGGSLGVEHASPAAIQTALAHLYTEQIDEP
CHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCH
QQLISHHDLIAAGLLAGPTARQRREQLGERLGIGYVNGKQLPKRLQLFQIQPADFWAAVD
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHEEECCCHHHHHHHH
QLTTEEK
HHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]