| Definition | Lactobacillus plantarum WCFS1, complete genome. |
|---|---|
| Accession | NC_004567 |
| Length | 3,308,274 |
Click here to switch to the map view.
The map label for this gene is vdlC [H]
Identifier: 28377279
GI number: 28377279
Start: 330437
End: 331336
Strand: Direct
Name: vdlC [H]
Synonym: lp_0364
Alternate gene names: 28377279
Gene position: 330437-331336 (Clockwise)
Preceding gene: 28377277
Following gene: 28377280
Centisome position: 9.99
GC content: 49.78
Gene sequence:
>900_bases ATGAGTCAACCACGGGTCATCTTAATTACGGGCGCATCTTCGGGGATCGGTAAAGCAACTGCTTTGAAGTTACAAGCTCA GGGGAACATTGTGTACGGAGCCGCACGGCGGATTGAAAAAATGACGGATTTAGCAGCGGCTGGAGTGCACGTTTTAAAAG TCGACGTGACGGATGAAGCGACGTTAATCGCGGCTGTCAAGACGATTCAGGTCGAACAGGGGCGCATTGATGTCCTAATC AACAATGCGGGGTATGGCTCATACGGTTCCTTGGAAGACGTTCCGGTCGCAGAAGGCGAGTACCAATTCAAGGTCAATGT CTTTGGTGTGATGCGGTTGACACAATTAGTTTTACCGTTGATGCGGGCACAACATCGTGGTCGGATCATTGATGTTTCTT CAATTGGGGGAAAGATCTATCAGCCTTTAAGTGCTTGGTATATGGGGACCAAACACGCAATTGAAGGGATGAGCGATTCG TTACGGATGGAAGTCGCACCATTTGGTATAGATGTTGTCATCGTTGAACCTGGTGGAATCAAGACTGAATGGGCTGGAAT TGCGGAAAAAAAGCTGTTGGCAGTTTCCGGTGAAACGGCTTATCATGAACAAGCCGTTAAGGTCGGTGCGATGCTGTCAT TGTTCGATCAGTTTGCTTCCAATCCGGGAGTGATTGCTAAACTGATGGTTCACGCTGTCAATGATGTGAAGCCCAAGACT CGCTATCACGCAGGTATGGGCGCGGGGGTCTCATTAACGGCTCGTCAGTGGTTGAGTGATCGTCAGTTTGACCGCATGAT GAACTCAGCCGTCAATGGTGCGGCTAAGCTGTCAAAAGTTACGCGGCGTAAGGACCGGCGAACCGGGAGTCGGCATTATC GGCATGGGAAAATAGGATAG
Upstream 100 bases:
>100_bases AGTTCTATTTTAGCATACTACGGGCAATGAATTCGATTGCAATTGTGAAGGGTTTGACGTAGCATGACAGTAAATACAGT TAACGATGGAGGAACGGATT
Downstream 100 bases:
>100_bases AATAATGTTGGTATTGACTCGTTATAGGTATTAAAACCTTATGGAAAGTTGAATAAAGTGAGTACGCCCGTATTTTTGAC GAGTTATTAAATGGTTACTT
Product: short chain dehydrogenase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 299; Mature: 298
Protein sequence:
>299_residues MSQPRVILITGASSGIGKATALKLQAQGNIVYGAARRIEKMTDLAAAGVHVLKVDVTDEATLIAAVKTIQVEQGRIDVLI NNAGYGSYGSLEDVPVAEGEYQFKVNVFGVMRLTQLVLPLMRAQHRGRIIDVSSIGGKIYQPLSAWYMGTKHAIEGMSDS LRMEVAPFGIDVVIVEPGGIKTEWAGIAEKKLLAVSGETAYHEQAVKVGAMLSLFDQFASNPGVIAKLMVHAVNDVKPKT RYHAGMGAGVSLTARQWLSDRQFDRMMNSAVNGAAKLSKVTRRKDRRTGSRHYRHGKIG
Sequences:
>Translated_299_residues MSQPRVILITGASSGIGKATALKLQAQGNIVYGAARRIEKMTDLAAAGVHVLKVDVTDEATLIAAVKTIQVEQGRIDVLI NNAGYGSYGSLEDVPVAEGEYQFKVNVFGVMRLTQLVLPLMRAQHRGRIIDVSSIGGKIYQPLSAWYMGTKHAIEGMSDS LRMEVAPFGIDVVIVEPGGIKTEWAGIAEKKLLAVSGETAYHEQAVKVGAMLSLFDQFASNPGVIAKLMVHAVNDVKPKT RYHAGMGAGVSLTARQWLSDRQFDRMMNSAVNGAAKLSKVTRRKDRRTGSRHYRHGKIG >Mature_298_residues SQPRVILITGASSGIGKATALKLQAQGNIVYGAARRIEKMTDLAAAGVHVLKVDVTDEATLIAAVKTIQVEQGRIDVLIN NAGYGSYGSLEDVPVAEGEYQFKVNVFGVMRLTQLVLPLMRAQHRGRIIDVSSIGGKIYQPLSAWYMGTKHAIEGMSDSL RMEVAPFGIDVVIVEPGGIKTEWAGIAEKKLLAVSGETAYHEQAVKVGAMLSLFDQFASNPGVIAKLMVHAVNDVKPKTR YHAGMGAGVSLTARQWLSDRQFDRMMNSAVNGAAKLSKVTRRKDRRTGSRHYRHGKIG
Specific function: Unknown
COG id: COG1028
COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI7657478, Length=256, Percent_Identity=31.640625, Blast_Score=116, Evalue=2e-26, Organism=Homo sapiens, GI223718074, Length=253, Percent_Identity=31.6205533596838, Blast_Score=110, Evalue=2e-24, Organism=Homo sapiens, GI7706318, Length=188, Percent_Identity=35.1063829787234, Blast_Score=104, Evalue=1e-22, Organism=Homo sapiens, GI20149619, Length=192, Percent_Identity=32.8125, Blast_Score=102, Evalue=5e-22, Organism=Homo sapiens, GI19743808, Length=266, Percent_Identity=29.3233082706767, Blast_Score=98, Evalue=1e-20, Organism=Homo sapiens, GI119392083, Length=268, Percent_Identity=27.9850746268657, Blast_Score=96, Evalue=4e-20, Organism=Homo sapiens, GI44680136, Length=265, Percent_Identity=23.7735849056604, Blast_Score=96, Evalue=6e-20, Organism=Homo sapiens, GI44680133, Length=265, Percent_Identity=23.7735849056604, Blast_Score=96, Evalue=6e-20, Organism=Homo sapiens, GI17738292, Length=265, Percent_Identity=23.7735849056604, Blast_Score=96, Evalue=6e-20, Organism=Homo sapiens, GI40548397, Length=262, Percent_Identity=30.1526717557252, Blast_Score=95, Evalue=7e-20, Organism=Homo sapiens, GI214010158, Length=262, Percent_Identity=30.1526717557252, Blast_Score=95, Evalue=7e-20, Organism=Homo sapiens, GI214010156, Length=262, Percent_Identity=30.1526717557252, Blast_Score=95, Evalue=7e-20, Organism=Homo sapiens, GI22758144, Length=262, Percent_Identity=30.1526717557252, Blast_Score=95, Evalue=7e-20, Organism=Homo sapiens, GI150247226, Length=298, Percent_Identity=28.5234899328859, Blast_Score=92, Evalue=6e-19, Organism=Homo sapiens, GI50726952, Length=261, Percent_Identity=30.2681992337165, Blast_Score=89, Evalue=6e-18, Organism=Homo sapiens, GI4503817, Length=197, Percent_Identity=30.4568527918782, Blast_Score=85, Evalue=1e-16, Organism=Homo sapiens, GI109715829, Length=195, Percent_Identity=29.7435897435897, Blast_Score=81, Evalue=9e-16, Organism=Homo sapiens, GI22507405, Length=269, Percent_Identity=29.368029739777, Blast_Score=79, Evalue=4e-15, Organism=Homo sapiens, GI157739938, Length=191, Percent_Identity=28.2722513089005, Blast_Score=79, Evalue=5e-15, Organism=Homo sapiens, GI4504503, Length=194, Percent_Identity=29.3814432989691, Blast_Score=76, Evalue=3e-14, Organism=Homo sapiens, GI59889578, Length=143, Percent_Identity=32.1678321678322, Blast_Score=75, Evalue=9e-14, Organism=Homo sapiens, GI142976729, Length=188, Percent_Identity=28.1914893617021, Blast_Score=73, Evalue=4e-13, Organism=Homo sapiens, GI7705855, Length=211, Percent_Identity=29.3838862559242, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI32483357, Length=193, Percent_Identity=31.0880829015544, Blast_Score=67, Evalue=2e-11, Organism=Escherichia coli, GI1786701, Length=267, Percent_Identity=31.8352059925094, Blast_Score=125, Evalue=3e-30, Organism=Escherichia coli, GI87082100, Length=187, Percent_Identity=37.4331550802139, Blast_Score=100, Evalue=1e-22, Organism=Escherichia coli, GI1787335, Length=184, Percent_Identity=34.7826086956522, Blast_Score=92, Evalue=5e-20, Organism=Escherichia coli, GI1788459, Length=196, Percent_Identity=30.1020408163265, Blast_Score=72, Evalue=3e-14, Organism=Escherichia coli, GI1787820, Length=177, Percent_Identity=27.1186440677966, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI2367175, Length=190, Percent_Identity=30, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI1786812, Length=177, Percent_Identity=28.8135593220339, Blast_Score=65, Evalue=5e-12, Organism=Escherichia coli, GI87082160, Length=184, Percent_Identity=24.4565217391304, Blast_Score=64, Evalue=9e-12, Organism=Escherichia coli, GI1790717, Length=188, Percent_Identity=30.3191489361702, Blast_Score=63, Evalue=2e-11, Organism=Escherichia coli, GI1787905, Length=140, Percent_Identity=29.2857142857143, Blast_Score=62, Evalue=3e-11, Organism=Caenorhabditis elegans, GI17557780, Length=278, Percent_Identity=27.3381294964029, Blast_Score=96, Evalue=2e-20, Organism=Caenorhabditis elegans, GI17570069, Length=182, Percent_Identity=31.8681318681319, Blast_Score=88, Evalue=4e-18, Organism=Caenorhabditis elegans, GI17560332, Length=254, Percent_Identity=32.2834645669291, Blast_Score=85, Evalue=5e-17, Organism=Caenorhabditis elegans, GI115534660, Length=187, Percent_Identity=29.4117647058824, Blast_Score=85, Evalue=5e-17, Organism=Caenorhabditis elegans, GI71997402, Length=188, Percent_Identity=32.4468085106383, Blast_Score=84, Evalue=7e-17, Organism=Caenorhabditis elegans, GI71994604, Length=182, Percent_Identity=33.5164835164835, Blast_Score=81, Evalue=7e-16, Organism=Caenorhabditis elegans, GI17562904, Length=225, Percent_Identity=28, Blast_Score=78, Evalue=5e-15, Organism=Caenorhabditis elegans, GI17538486, Length=202, Percent_Identity=28.7128712871287, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI32563809, Length=268, Percent_Identity=25.3731343283582, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17507613, Length=268, Percent_Identity=25.3731343283582, Blast_Score=77, Evalue=2e-14, Organism=Caenorhabditis elegans, GI71994600, Length=189, Percent_Identity=32.8042328042328, Blast_Score=77, Evalue=2e-14, Organism=Caenorhabditis elegans, GI193210355, Length=264, Percent_Identity=26.1363636363636, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17562908, Length=203, Percent_Identity=33.4975369458128, Blast_Score=71, Evalue=8e-13, Organism=Caenorhabditis elegans, GI17562910, Length=198, Percent_Identity=29.2929292929293, Blast_Score=71, Evalue=8e-13, Organism=Caenorhabditis elegans, GI17562906, Length=197, Percent_Identity=31.9796954314721, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI193204405, Length=227, Percent_Identity=29.9559471365639, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17562990, Length=194, Percent_Identity=31.9587628865979, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17565030, Length=196, Percent_Identity=31.1224489795918, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI71982365, Length=146, Percent_Identity=34.2465753424658, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI17531453, Length=194, Percent_Identity=32.4742268041237, Blast_Score=69, Evalue=4e-12, Organism=Caenorhabditis elegans, GI17508895, Length=185, Percent_Identity=29.1891891891892, Blast_Score=68, Evalue=5e-12, Organism=Caenorhabditis elegans, GI17560676, Length=193, Percent_Identity=28.4974093264249, Blast_Score=67, Evalue=8e-12, Organism=Caenorhabditis elegans, GI17558628, Length=226, Percent_Identity=32.3008849557522, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17538480, Length=194, Percent_Identity=29.8969072164948, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17567345, Length=186, Percent_Identity=28.494623655914, Blast_Score=65, Evalue=3e-11, Organism=Caenorhabditis elegans, GI17559104, Length=224, Percent_Identity=27.2321428571429, Blast_Score=65, Evalue=5e-11, Organism=Caenorhabditis elegans, GI17551412, Length=197, Percent_Identity=30.4568527918782, Blast_Score=64, Evalue=7e-11, Organism=Saccharomyces cerevisiae, GI6323882, Length=194, Percent_Identity=35.5670103092784, Blast_Score=110, Evalue=2e-25, Organism=Saccharomyces cerevisiae, GI6322067, Length=200, Percent_Identity=33, Blast_Score=91, Evalue=3e-19, Organism=Saccharomyces cerevisiae, GI6322861, Length=192, Percent_Identity=32.8125, Blast_Score=67, Evalue=2e-12, Organism=Saccharomyces cerevisiae, GI6322227, Length=198, Percent_Identity=30.3030303030303, Blast_Score=64, Evalue=2e-11, Organism=Drosophila melanogaster, GI21357041, Length=187, Percent_Identity=34.2245989304813, Blast_Score=97, Evalue=9e-21, Organism=Drosophila melanogaster, GI21358495, Length=189, Percent_Identity=35.4497354497354, Blast_Score=97, Evalue=2e-20, Organism=Drosophila melanogaster, GI116007236, Length=210, Percent_Identity=32.3809523809524, Blast_Score=97, Evalue=2e-20, Organism=Drosophila melanogaster, GI24580925, Length=194, Percent_Identity=34.020618556701, Blast_Score=93, Evalue=2e-19, Organism=Drosophila melanogaster, GI28571526, Length=186, Percent_Identity=34.4086021505376, Blast_Score=91, Evalue=8e-19, Organism=Drosophila melanogaster, GI116007238, Length=182, Percent_Identity=33.5164835164835, Blast_Score=91, Evalue=1e-18, Organism=Drosophila melanogaster, GI24651139, Length=191, Percent_Identity=31.413612565445, Blast_Score=84, Evalue=8e-17, Organism=Drosophila melanogaster, GI24640442, Length=207, Percent_Identity=34.7826086956522, Blast_Score=82, Evalue=3e-16, Organism=Drosophila melanogaster, GI28571387, Length=197, Percent_Identity=35.5329949238579, Blast_Score=81, Evalue=8e-16, Organism=Drosophila melanogaster, GI23397609, Length=185, Percent_Identity=32.972972972973, Blast_Score=81, Evalue=9e-16, Organism=Drosophila melanogaster, GI24644339, Length=182, Percent_Identity=31.8681318681319, Blast_Score=80, Evalue=2e-15, Organism=Drosophila melanogaster, GI24648944, Length=195, Percent_Identity=30.2564102564103, Blast_Score=78, Evalue=6e-15, Organism=Drosophila melanogaster, GI24641232, Length=198, Percent_Identity=32.3232323232323, Blast_Score=78, Evalue=8e-15, Organism=Drosophila melanogaster, GI116007234, Length=196, Percent_Identity=32.6530612244898, Blast_Score=76, Evalue=2e-14, Organism=Drosophila melanogaster, GI24648693, Length=196, Percent_Identity=32.6530612244898, Blast_Score=74, Evalue=8e-14, Organism=Drosophila melanogaster, GI21355889, Length=196, Percent_Identity=32.6530612244898, Blast_Score=74, Evalue=8e-14, Organism=Drosophila melanogaster, GI116007232, Length=179, Percent_Identity=32.4022346368715, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI24643142, Length=182, Percent_Identity=31.8681318681319, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI19922066, Length=184, Percent_Identity=28.804347826087, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI281364892, Length=173, Percent_Identity=30.635838150289, Blast_Score=69, Evalue=4e-12, Organism=Drosophila melanogaster, GI21357673, Length=196, Percent_Identity=30.1020408163265, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI24641388, Length=196, Percent_Identity=31.6326530612245, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI21355631, Length=176, Percent_Identity=26.1363636363636, Blast_Score=66, Evalue=3e-11, Organism=Drosophila melanogaster, GI21356301, Length=194, Percent_Identity=30.9278350515464, Blast_Score=65, Evalue=4e-11, Organism=Drosophila melanogaster, GI21355319, Length=189, Percent_Identity=29.1005291005291, Blast_Score=65, Evalue=4e-11, Organism=Drosophila melanogaster, GI24649181, Length=168, Percent_Identity=27.9761904761905, Blast_Score=65, Evalue=6e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 32357; Mature: 32226
Theoretical pI: Translated: 10.36; Mature: 10.36
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSQPRVILITGASSGIGKATALKLQAQGNIVYGAARRIEKMTDLAAAGVHVLKVDVTDEA CCCCCEEEEECCCCCCCCEEEEEEEECCCEEEHHHHHHHHHHHHHHCCEEEEEEECCCCC TLIAAVKTIQVEQGRIDVLINNAGYGSYGSLEDVPVAEGEYQFKVNVFGVMRLTQLVLPL EEEEEEEEEEEECCEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHHHHHH MRAQHRGRIIDVSSIGGKIYQPLSAWYMGTKHAIEGMSDSLRMEVAPFGIDVVIVEPGGI HHHHHCCCEEEEHHCCCHHHHHHHHHHCCHHHHHCCCCCCCEEEEECCCEEEEEECCCCC KTEWAGIAEKKLLAVSGETAYHEQAVKVGAMLSLFDQFASNPGVIAKLMVHAVNDVKPKT CCHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCH RYHAGMGAGVSLTARQWLSDRQFDRMMNSAVNGAAKLSKVTRRKDRRTGSRHYRHGKIG HHCCCCCCCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC >Mature Secondary Structure SQPRVILITGASSGIGKATALKLQAQGNIVYGAARRIEKMTDLAAAGVHVLKVDVTDEA CCCCEEEEECCCCCCCCEEEEEEEECCCEEEHHHHHHHHHHHHHHCCEEEEEEECCCCC TLIAAVKTIQVEQGRIDVLINNAGYGSYGSLEDVPVAEGEYQFKVNVFGVMRLTQLVLPL EEEEEEEEEEEECCEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHHHHHH MRAQHRGRIIDVSSIGGKIYQPLSAWYMGTKHAIEGMSDSLRMEVAPFGIDVVIVEPGGI HHHHHCCCEEEEHHCCCHHHHHHHHHHCCHHHHHCCCCCCCEEEEECCCEEEEEECCCCC KTEWAGIAEKKLLAVSGETAYHEQAVKVGAMLSLFDQFASNPGVIAKLMVHAVNDVKPKT CCHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCH RYHAGMGAGVSLTARQWLSDRQFDRMMNSAVNGAAKLSKVTRRKDRRTGSRHYRHGKIG HHCCCCCCCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9139899; 9252185 [H]